Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq672 131 2e-25 seq575 82.4 7e-11 >seq672 Length=1102954 Score = 131 bits (144), Expect = 2e-25 Identities = 161/220 (73%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 ||||| ||||| || | ||||||||||| || | ||| || || || |||| | Sbjct 391588 TCGCAGCACCAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCCGACAGAGTGCGGCC 391647 Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||||||||| || ||| | ||||| | | ||||||||||| ||||| ||||| || Sbjct 391648 ATCCTCCAGCTGCTTACCGGCGAAGATGAGACGCTGCTGATCTGGGGGAATTCCTTCCTT 391707 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | ||| |||||||| || ||| ||||| | | ||||| |||| ||||| Sbjct 391708 ATCCTGAATCTTTGCCTTCACATTTTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTGAT 391767 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTT 95011 ||| || || || || |||||||| || ||||||||| || Sbjct 391768 GGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCATGATT 391807 >seq575 Length=281738 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||| || | || || ||||| || | |||||| || || ||| |||||| Sbjct 24155 CACCAGATGAAGGGTCGACTCCTTCTGAATGTTATAGTCAGACAGTGTGCGTCCATCCTC 24096 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 |||||| || ||| | ||||| || | |||||||| || || || || || || || | Sbjct 24095 CAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCCGGCGGGATGCCCTCCTTATCCTG 24036 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || ||||| || ||| || || | | | ||||| |||| || || || || Sbjct 24035 GATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATAGTCTT 23976 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || ||||| || ||||||||||| Sbjct 23975 ACCCGTGAGGGTTTTGACGAAGATCTGCAT 23946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448283399733120