Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1224 185 1e-42 seq1214 176 7e-40 seq224 170 3e-38 >seq1224 Length=3725 Score = 185 bits (204), Expect = 1e-42 Identities = 201/267 (75%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||||| | || || ||||||||||| || ||||||||||| || ||| Sbjct 1465 GCCAAGCGTCATCGCAAAGTGCTGCGTGATAACATCCAGGGCATCACCAAGCCGGCCATC 1524 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||||||||| || ||||| ||||| |||||| ||||||| | |||| ||||| | Sbjct 1525 CGTCGTCTGGCCCGCCGTGGAGGAGTGAAGCGTATCTCTGGCCTCATCTACGAAGAAACG 1584 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || |||| | ||| | | | ||||||| ||||| || ||||||||| Sbjct 1585 CGTGGCGTGCTGAAAGTGTTCTTGGAAAATGTTATCCGCGATGCGGTCACCTATACCGAA 1644 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||| |||||| | |||||| | || || || |||| ||||| || Sbjct 1645 CACGCCAAGCGCAAGACCGTCACCGCGATGGATGTAGTGTACGCGCTGAAGCGTCAGGGT 1704 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | | || ||||| ||| ||||| Sbjct 1705 CGCACGCTGTACGGTTTCGGAGGTTAA 1731 >seq1214 Length=3694 Score = 176 bits (194), Expect = 7e-40 Identities = 199/267 (75%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| || | | || || ||||||||||| || || |||||||| || ||| Sbjct 334 GCCAAGCGTCACCGTAAAGTGCTGCGCGATAACATCCAGGGCATTACCAAGCCTGCCATC 393 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || |||||||| ||||| || ||||| |||||| | || || || |||| || || | Sbjct 394 CGCCGTCTGGCCCGTCGCGGAGGAGTGAAGCGTATTTCCGGCCTGATCTACGAGGAAACC 453 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| |||| |||| | ||||| ||| |||||||| |||||| | || || || Sbjct 454 CGTGGTGTTCTGAAAGTGTTCCTGGAGAACGTTATCCGTGATGCGGTAACTTACACGGAA 513 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || |||||||| |||||| | |||||| | || ||||| |||| ||||| ||| Sbjct 514 CACGCGAAGCGTAAGACCGTCACCGCTATGGATGTGGTGTATGCCCTGAAGCGTCAGGGC 573 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | || ||||| ||| ||||| Sbjct 574 CGCACCCTGTACGGTTTCGGAGGTTAA 600 >seq224 Length=1547433 Score = 170 bits (188), Expect = 3e-38 Identities = 198/267 (74%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | ||||| || |||||||| || || |||||||| || ||| Sbjct 1318159 GCCAAGCGTCATCGTAAGGTGCTTCGCGACAACATCCAGGGTATTACCAAGCCCGCCATC 1318218 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||||||||| || || ||||| |||||| |||| || || |||| || || | Sbjct 1318219 CGTCGTCTGGCTCGCCGCGGCGGAGTGAAGCGTATCTCCGGGCTGATCTACGAGGAAACG 1318278 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| ||||| | ||||| ||| ||| |||| ||||| || ||| || ||| Sbjct 1318279 CGCGGTGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGATGCCGTCACCTACACTGAG 1318338 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || |||||||| || || | |||||| | || || || |||| || || ||| Sbjct 1318339 CACGCCAAGCGTAAGACCGTAACGGCGATGGATGTGGTGTACGCTCTGAAGCGCCAGGGC 1318398 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | | || ||||| ||| | ||| Sbjct 1318399 CGTACGCTGTACGGTTTCGGAGGCTAA 1318425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073927284656