Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq1360 104 4e-17 >seq1360 Length=640366 Score = 104 bits (114), Expect = 4e-17 Identities = 358/551 (65%), Gaps = 8/551 (1%) Strand=Plus/Plus Query 193645 CTGAGATCTATAATCTTGGTGCTCAAAGTCATGTTAAAGTTTCCTTTGAGATGCCAGAGT 193704 |||| ||||| ||||| | || ||||| || || || | || || || || || | Sbjct 380394 CTGAAATCTACAATCTGGCCGCCCAAAGCCACGTCAAGATATCGTTCGATTTGAGCGAAT 380453 Query 193705 ATACTTCTAATGTTGATGCTTTAGGAACTCTTAGAATACTTGAAGCAGTTCGTAT-GTTG 193763 |||| | | || |||||| | || || || | | || || || | |||| || | Sbjct 380454 ATACGGCGGAGGTAGATGCTGTCGGTACACTACGTTTGCTAGATGCCATCCGTACCGTCG 380513 Query 193764 GGAATGGAGAAAGA-TGTTCGCATCTATCAGGCATCTACCAGCGAACTGTATGGT--GGT 193820 || | ||| ||||| ||| ||| |||| || || || || || ||||| || ||| Sbjct 380514 GGCA-GGA-AAAGACTGTCCGCTTCTACCAAGCTTCCACGTCGGAGCTGTACGGAAAGGT 380571 Query 193821 GTTCTAGGCACTCCACTATCAGAAACCACACCATTTCATCCACGCTCTCCTTATGGTGTA 193880 | | || ||| || | |||| || || || |||||||||| || || | | Sbjct 380572 GGCCGAGACACCACAGAAC--GAAAAGACTCCGTTCTATCCACGCTCACCGTACGCTTGT 380629 Query 193881 GCAAAGTTGTATGGTTATTGGATCATCAAGAATTATCGTGAGTCATATGGATTCCACGCT 193940 || ||| |||| || || ||||| | | || ||||| || | || | | ||| Sbjct 380630 GCGAAGATGTACGGATACTGGATTGTGATAAACTATCGCGAAGCGTACGACATGTTCGCC 380689 Query 193941 AGTTCTGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAACTCGT 194000 | || |||||||| || ||||| || || | | || || | |||||||| || Sbjct 380690 TGCAACGGGATTCTCTTTAACCACGAGTCACCGCGCCGGGGAGAAAATTTTGTAACGCGC 380749 Query 194001 AAGATTACACAAGGTTTATCTAAGATCTCTGTTGGATTACAGAAGATTCTTTATCTTGGT 194060 || ||||| | | | || || || | || || || ||| | || ||| Sbjct 380750 AAAATTACCCGCTCGGTGGCAAAAATTTCGCTCGGCCAGCAAGAGTATCTGGAGCTGGGT 380809 Query 194061 AATCTTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGATGTGGTTA 194120 ||||| | | || | || ||||| |||||||| ||||| || |||||||||||| | Sbjct 380810 AATCTCGACTCGAAACGTGACTGGGGCCACGCAAAAGATTACGTCGAAGCGATGTGGCTT 380869 Query 194121 ATGTTGCAACAGGATGAACCCGATGATTATGTGATTGCTACAGGTGAACAGTATTCTGTT 194180 ||| |||| ||||| |||| || || | ||| ||||| || |||||| | | || || Sbjct 380870 ATGATGCAGCAGGACAAACCGGAAGACTTTGTAATTGCGACGGGTGAAACGCACTCGGTG 380929 Query 194181 AGAGACTTTGT 194191 | || ||||| Sbjct 380930 CGTGAATTTGT 380940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807541148539520