Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28]
1,392 sequences; 225,223,604 total letters
Query= NC_006883.2
Length=252401
Score E
Sequences producing significant alignments: (Bits) Value
seq1360 104 4e-17
>seq1360
Length=640366
Score = 104 bits (114), Expect = 4e-17
Identities = 358/551 (65%), Gaps = 8/551 (1%)
Strand=Plus/Plus
Query 193645 CTGAGATCTATAATCTTGGTGCTCAAAGTCATGTTAAAGTTTCCTTTGAGATGCCAGAGT 193704
|||| ||||| ||||| | || ||||| || || || | || || || || || |
Sbjct 380394 CTGAAATCTACAATCTGGCCGCCCAAAGCCACGTCAAGATATCGTTCGATTTGAGCGAAT 380453
Query 193705 ATACTTCTAATGTTGATGCTTTAGGAACTCTTAGAATACTTGAAGCAGTTCGTAT-GTTG 193763
|||| | | || |||||| | || || || | | || || || | |||| || |
Sbjct 380454 ATACGGCGGAGGTAGATGCTGTCGGTACACTACGTTTGCTAGATGCCATCCGTACCGTCG 380513
Query 193764 GGAATGGAGAAAGA-TGTTCGCATCTATCAGGCATCTACCAGCGAACTGTATGGT--GGT 193820
|| | ||| ||||| ||| ||| |||| || || || || || ||||| || |||
Sbjct 380514 GGCA-GGA-AAAGACTGTCCGCTTCTACCAAGCTTCCACGTCGGAGCTGTACGGAAAGGT 380571
Query 193821 GTTCTAGGCACTCCACTATCAGAAACCACACCATTTCATCCACGCTCTCCTTATGGTGTA 193880
| | || ||| || | |||| || || || |||||||||| || || | |
Sbjct 380572 GGCCGAGACACCACAGAAC--GAAAAGACTCCGTTCTATCCACGCTCACCGTACGCTTGT 380629
Query 193881 GCAAAGTTGTATGGTTATTGGATCATCAAGAATTATCGTGAGTCATATGGATTCCACGCT 193940
|| ||| |||| || || ||||| | | || ||||| || | || | | |||
Sbjct 380630 GCGAAGATGTACGGATACTGGATTGTGATAAACTATCGCGAAGCGTACGACATGTTCGCC 380689
Query 193941 AGTTCTGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAACTCGT 194000
| || |||||||| || ||||| || || | | || || | |||||||| ||
Sbjct 380690 TGCAACGGGATTCTCTTTAACCACGAGTCACCGCGCCGGGGAGAAAATTTTGTAACGCGC 380749
Query 194001 AAGATTACACAAGGTTTATCTAAGATCTCTGTTGGATTACAGAAGATTCTTTATCTTGGT 194060
|| ||||| | | | || || || | || || || ||| | || |||
Sbjct 380750 AAAATTACCCGCTCGGTGGCAAAAATTTCGCTCGGCCAGCAAGAGTATCTGGAGCTGGGT 380809
Query 194061 AATCTTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGATGTGGTTA 194120
||||| | | || | || ||||| |||||||| ||||| || |||||||||||| |
Sbjct 380810 AATCTCGACTCGAAACGTGACTGGGGCCACGCAAAAGATTACGTCGAAGCGATGTGGCTT 380869
Query 194121 ATGTTGCAACAGGATGAACCCGATGATTATGTGATTGCTACAGGTGAACAGTATTCTGTT 194180
||| |||| ||||| |||| || || | ||| ||||| || |||||| | | || ||
Sbjct 380870 ATGATGCAGCAGGACAAACCGGAAGACTTTGTAATTGCGACGGGTGAAACGCACTCGGTG 380929
Query 194181 AGAGACTTTGT 194191
| || |||||
Sbjct 380930 CGTGAATTTGT 380940
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 807541148539520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |