Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28]
1,392 sequences; 225,223,604 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq872 407 2e-108
seq628 114 2e-20
>seq872
Length=887634
Score = 407 bits (450), Expect = 2e-108
Identities = 1229/1883 (65%), Gaps = 30/1883 (2%)
Strand=Plus/Plus
Query 61986 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 62045
||||||| || ||||| |||| | || ||||| || || || |||||||| |||
Sbjct 220940 TTGTCCACCGTAAATTGGATGGCATTTACGGCCGGTTTGGTGCGCAGGTAGTACATGCCC 220999
Query 62046 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 62105
|| ||||| || | |||| |||| ||||| || ||| || ||| ||| ||||
Sbjct 221000 GTCTTTAGTCCCATCTTCCACGCGTAGAAATGGATCGACGTCAGCTTGCCATAGTTCGGC 221059
Query 62106 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62165
|| || | || || || | ||||| |||||||| || ||||||| || || |||
Sbjct 221060 TCGGCCACGTGTATGTTAAATGATTGTGACTGATCGATAAACGCTCCCCGATCGGCCGCC 221119
Query 62166 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATATC 62224
||||| ||| || || | || ||||| | || || || | |||| | | |
Sbjct 221120 ATTTTGATGGATGTTTTCACCGAGATCTCCCATACCGTCTTGTACAGGTCGCGGATTTCC 221179
Query 62225 TTCTGGAAGGTTTGTAT--TCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATC 62282
|| | | | || || | ||||| ||||| | | || || | ||||| ||
Sbjct 221180 TTTGGTATTGATTCAATGTTTTGAATCGATCCGTTGTTGGACAAGATGTTGTTCTTCATG 221239
Query 62283 TCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGA 62342
||| || ||| || || | |||| | || || ||||| | || || || ||
Sbjct 221240 TCAAGATCCCACAAACCCATCGCTGTTAGATCTTGCAGCAGATGATGGTTCACCACCTGG 221299
Query 62343 AATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCA 62402
|| || || || | || | || |||||| || || ||||| || | ||||||
Sbjct 221300 AACTCGCCCGATAGCACACGTCGGTTGTAAACGTTCGACGTGTACGGCTCGAAGGACTCA 221359
Query 62403 TTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTT 62462
|| || ||||| ||||| || || || || |||||||| ||||||| || || ||
Sbjct 221360 TTGTTGCCCAATATTTGTGCCGTCGAAGCTGTCGGCATCGGTGCCAGCAGTAGCGAGTTA 221419
Query 62463 CTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGT 62522
| || ||||| || || || || || | | ||| ||||| ||||||| ||||
Sbjct 221420 CGAATACCGTGCTTTGCAATCTTCTCCTTCAACTCTGTCCAGTTCCACAGATCCGTCGGT 221479
Query 62523 ACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACATATGT 62581
| ||||| | ||| || || | | || | ||| |||| ||
Sbjct 221480 TCTTTGTTCCACATTTCGTACTGTAGGACACCCTTGCTCACTGGACAA-CCTTCATACGT 221538
Query 62582 ATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAAT 62641
|||||||| || ||| |||| | ||| || || || || | ||| || || || ||
Sbjct 221539 CTCGTATGGACCGTCCCGTGCAGCCAATTCGCAGCTTGCTTCCAGTGCTCCATAGTAGAT 221598
Query 62642 GGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAA 62701
|||||| || || | | ||| || | ||| || || ||| || ||||||| |
Sbjct 221599 GGTTTCAAATATTTGTTGATTCAGCTTTTGGGCCTCTTCGCTTTCGTATGGATAGCGCAT 221658
Query 62702 GAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATT 62761
| ||| ||||| || || | || || ||||| |||||||| || || || | | | ||
Sbjct 221659 TAAAATGAACGCATCGGCCATGCCCTGCACACCGATACCGATGGGCCTGTGGCGCATGTT 221718
Query 62762 AGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTC- 62820
|| | || || || | ||||| || || || || || ||||| || ||||| |
Sbjct 221719 GGAACGCTTCGCCTCCGGCACCGGATAGTAGTTTATGTCGATGATTTTGTTCAGATTGCG 221778
Query 62821 TGACAATTACT---TTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATC---TA 62874
|| ||||| ||| | ||||||||||| || | ||||| | || ||| |
Sbjct 221779 TG----TTACTATCTTGGCGACATCCTTCAGCTTTACGAAATCGTACGTCCTATCGGATT 221834
Query 62875 TTACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATC-- 62932
|||| |||||||||| || | || |||||||| ||||| || | |||| | ||
Sbjct 221835 TTACGAACATGTTCAGTGCGATCGAGGCCAGATTGCAAACCGCAATTTCATC--CTTCGA 221892
Query 62933 CGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTG 62992
|| || | | ||||||||||| | ||| |||||| || || || | || || ||
Sbjct 221893 CGAGTACTCCACAATCTCAGTGCACAAGTTAGAACACTTAATGGTGCCAATGTTCTGCTG 221952
Query 62993 ATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTG 63052
|| || || ||| || |||||||| || || || | || || ||||| | |||
Sbjct 221953 GTTGCTTTTGCGGTTGCATGCATCCTTGTACAGCATATACGGTACGCCCGTTTCCACCTG 222012
Query 63053 AGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTAT-TATAGATTTGTATCTCCTTT 63111
||||| || ||||| ||| | | | ||||| | | || | | || |
Sbjct 222013 CGATTCAATGATCGCGAACCACAAATCCTGTGCCTTCACCTGGCGAATAAAACGACCCT- 222071
Query 63112 CTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAG 63171
|| | ||||| || |||| | ||||||| || ||||| || ||| || |
Sbjct 222072 CTTTCTCGTAGCCAGTGTACAGTGCCTCGAACTTTTCACCCCAGCTATCAGACAAACCGG 222131
Query 63172 GACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGA 63231
|||| || | || ||||| | |||| | ||| ||| ||| || | ||| || |
Sbjct 222132 GACAATCGTGAGGGCACATTAGACTCCACATTTCGTTCGCCTCCACCCGCTCCATGAACA 222191
Query 63232 GATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT---TCCTCGTTTCCTG 63288
|||| |||||||| | || |||| | || || || | | | ||||| || || |
Sbjct 222192 GATCCGGAATCCACAAGGCG-TAAA-ACATGTCGCGTGC-ACGCACCTCCTCTTTGCCGG 222248
Query 63289 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 63348
| || || || ||||| || ||| | | | |||| ||||||||||| | ||| ||||
Sbjct 222249 TGTTTTTCTTCAGATCCAGAAACTCGAACACATCACCGTGCCACGGTTCGAGGTAGATGG 222308
Query 63349 CCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 63408
| | | |||| || || ||||| || |||||||| | ||||| || || || || || |
Sbjct 222309 CAAAAGCTCCCGGGCGCTTGTTGCCACCCTGATCCACGTATCGGGCCGTATTGTTGTACA 222368
Query 63409 CTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCAC 63468
| | || |||||| | | |||||||| || ||||| || || ||||| || | ||
Sbjct 222369 CGCGCAGCATTGGCACCAACCCGTTTGAAATTCCATTCGTGCCCGAGATGTACGTACCTT 222428
Query 63469 TGGCACGAATATTACTAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 63527
| || |||||| | | | | || || ||||| || || ||| || || | |||
Sbjct 222429 TCGCGCGAATAC-AGTGCACGTTCAGCCCAATTCCGCCAGCAGATTTTGAAATCAGTGCA 222487
Query 63528 CATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAA 63587
|| | || | ||| || |||||||| || ||||| || || |||| | || | |||
Sbjct 222488 CACTGCTTCAGCGTATCGTAGATACCTTCAATGCTGTCGTCCGACATGGTGAGCAAGAAA 222547
Query 63588 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 63647
||| |||| || |||| || |||| ||| | ||| || || || || |||
Sbjct 222548 CAGGACGACAACTGCGGACGTTGCGTAGCCGCCGCAAACATGGTCGGTGAGGCATGGGTA 222607
Query 63648 AACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGA 63707
|| | || ||||| |||||||| ||||| || |||| || || || ||||
Sbjct 222608 AAGTAGCGCTCCGAAAGCAGATTGTAAGTCTCGATTGCTGCATCGATGTCTTCACCATGA 222667
Query 63708 ATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATT 63767
|| || | || || ||||| ||||| ||||| |||| |||||||||||| || ||
Sbjct 222668 ATGCCGATCGCAACGCGCATCAACATATGCTGCGGTCGCTCAACGATCTTGCCCTTGATC 222727
Query 63768 TTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGT 63827
|||||||||||||| || |||||||| || || ||||||||||| ||| || ||
Sbjct 222728 TTCAACAAGTAGGACCGCTCTAAAGTTTTGAAGCCGAAATAGTTGTACCCAAAATCGCGA 222787
Query 63828 TCGTAAATAATAACCGAGTTGAG 63850
|| ||||| ||| |||| || ||
Sbjct 222788 TCATAAATTATAGCCGAATTCAG 222810
>seq628
Length=1452984
Score = 114 bits (126), Expect = 2e-20
Identities = 181/257 (70%), Gaps = 3/257 (1%)
Strand=Plus/Plus
Query 33292 TTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTG 33351
|||||||||| || || || || ||||| || || || || | ||| || |||||
Sbjct 708174 TTAAACATCAGGCAGGCAAAGTCACAGTGTAGTCCTTCATCACGCGAAATCAGCTCGTTC 708233
Query 33352 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT 33411
|| || || ||||| ||||| || |||||||| || ||||| || |||| || ||
Sbjct 708234 GAGAAGGTAAGTCCCGGCATCAGTCCACGCTTCTTCAGCCAGAAAATGGCGGCAAAGCTA 708293
Query 33412 CCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG 33471
|| |||||||| ||||| || |||||||| || | | | ||| ||| | ||
Sbjct 708294 CCGCTGAAGAAGATACCTTCGACAGCAGCAAACGCGACGACACGCTCGCCAAAGTTTGCC 708353
Query 33472 CTGT--CATGT-ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTT 33528
| | | || ||||| || | ||||||||||||||||| || || || |||| ||||
Sbjct 708354 TTCTTGCTTGAGATCCAGTTCAGTGCCCAATCGGCCTTCTTCTTCACGCACGGCAGCGTT 708413
Query 33529 TCTATGGCATTAAAGAG 33545
|| || ||||| || ||
Sbjct 708414 TCAATTGCATTGAACAG 708430
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622936360718720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |