Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq872 407 2e-108 seq628 114 2e-20 >seq872 Length=887634 Score = 407 bits (450), Expect = 2e-108 Identities = 1229/1883 (65%), Gaps = 30/1883 (2%) Strand=Plus/Plus Query 61986 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 62045 ||||||| || ||||| |||| | || ||||| || || || |||||||| ||| Sbjct 220940 TTGTCCACCGTAAATTGGATGGCATTTACGGCCGGTTTGGTGCGCAGGTAGTACATGCCC 220999 Query 62046 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 62105 || ||||| || | |||| |||| ||||| || ||| || ||| ||| |||| Sbjct 221000 GTCTTTAGTCCCATCTTCCACGCGTAGAAATGGATCGACGTCAGCTTGCCATAGTTCGGC 221059 Query 62106 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62165 || || | || || || | ||||| |||||||| || ||||||| || || ||| Sbjct 221060 TCGGCCACGTGTATGTTAAATGATTGTGACTGATCGATAAACGCTCCCCGATCGGCCGCC 221119 Query 62166 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATATC 62224 ||||| ||| || || | || ||||| | || || || | |||| | | | Sbjct 221120 ATTTTGATGGATGTTTTCACCGAGATCTCCCATACCGTCTTGTACAGGTCGCGGATTTCC 221179 Query 62225 TTCTGGAAGGTTTGTAT--TCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATC 62282 || | | | || || | ||||| ||||| | | || || | ||||| || Sbjct 221180 TTTGGTATTGATTCAATGTTTTGAATCGATCCGTTGTTGGACAAGATGTTGTTCTTCATG 221239 Query 62283 TCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGA 62342 ||| || ||| || || | |||| | || || ||||| | || || || || Sbjct 221240 TCAAGATCCCACAAACCCATCGCTGTTAGATCTTGCAGCAGATGATGGTTCACCACCTGG 221299 Query 62343 AATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCA 62402 || || || || | || | || |||||| || || ||||| || | |||||| Sbjct 221300 AACTCGCCCGATAGCACACGTCGGTTGTAAACGTTCGACGTGTACGGCTCGAAGGACTCA 221359 Query 62403 TTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTT 62462 || || ||||| ||||| || || || || |||||||| ||||||| || || || Sbjct 221360 TTGTTGCCCAATATTTGTGCCGTCGAAGCTGTCGGCATCGGTGCCAGCAGTAGCGAGTTA 221419 Query 62463 CTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGT 62522 | || ||||| || || || || || | | ||| ||||| ||||||| |||| Sbjct 221420 CGAATACCGTGCTTTGCAATCTTCTCCTTCAACTCTGTCCAGTTCCACAGATCCGTCGGT 221479 Query 62523 ACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACATATGT 62581 | ||||| | ||| || || | | || | ||| |||| || Sbjct 221480 TCTTTGTTCCACATTTCGTACTGTAGGACACCCTTGCTCACTGGACAA-CCTTCATACGT 221538 Query 62582 ATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAAT 62641 |||||||| || ||| |||| | ||| || || || || | ||| || || || || Sbjct 221539 CTCGTATGGACCGTCCCGTGCAGCCAATTCGCAGCTTGCTTCCAGTGCTCCATAGTAGAT 221598 Query 62642 GGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAA 62701 |||||| || || | | ||| || | ||| || || ||| || ||||||| | Sbjct 221599 GGTTTCAAATATTTGTTGATTCAGCTTTTGGGCCTCTTCGCTTTCGTATGGATAGCGCAT 221658 Query 62702 GAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATT 62761 | ||| ||||| || || | || || ||||| |||||||| || || || | | | || Sbjct 221659 TAAAATGAACGCATCGGCCATGCCCTGCACACCGATACCGATGGGCCTGTGGCGCATGTT 221718 Query 62762 AGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTC- 62820 || | || || || | ||||| || || || || || ||||| || ||||| | Sbjct 221719 GGAACGCTTCGCCTCCGGCACCGGATAGTAGTTTATGTCGATGATTTTGTTCAGATTGCG 221778 Query 62821 TGACAATTACT---TTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATC---TA 62874 || ||||| ||| | ||||||||||| || | ||||| | || ||| | Sbjct 221779 TG----TTACTATCTTGGCGACATCCTTCAGCTTTACGAAATCGTACGTCCTATCGGATT 221834 Query 62875 TTACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATC-- 62932 |||| |||||||||| || | || |||||||| ||||| || | |||| | || Sbjct 221835 TTACGAACATGTTCAGTGCGATCGAGGCCAGATTGCAAACCGCAATTTCATC--CTTCGA 221892 Query 62933 CGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTG 62992 || || | | ||||||||||| | ||| |||||| || || || | || || || Sbjct 221893 CGAGTACTCCACAATCTCAGTGCACAAGTTAGAACACTTAATGGTGCCAATGTTCTGCTG 221952 Query 62993 ATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTG 63052 || || || ||| || |||||||| || || || | || || ||||| | ||| Sbjct 221953 GTTGCTTTTGCGGTTGCATGCATCCTTGTACAGCATATACGGTACGCCCGTTTCCACCTG 222012 Query 63053 AGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTAT-TATAGATTTGTATCTCCTTT 63111 ||||| || ||||| ||| | | | ||||| | | || | | || | Sbjct 222013 CGATTCAATGATCGCGAACCACAAATCCTGTGCCTTCACCTGGCGAATAAAACGACCCT- 222071 Query 63112 CTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAG 63171 || | ||||| || |||| | ||||||| || ||||| || ||| || | Sbjct 222072 CTTTCTCGTAGCCAGTGTACAGTGCCTCGAACTTTTCACCCCAGCTATCAGACAAACCGG 222131 Query 63172 GACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGA 63231 |||| || | || ||||| | |||| | ||| ||| ||| || | ||| || | Sbjct 222132 GACAATCGTGAGGGCACATTAGACTCCACATTTCGTTCGCCTCCACCCGCTCCATGAACA 222191 Query 63232 GATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT---TCCTCGTTTCCTG 63288 |||| |||||||| | || |||| | || || || | | | ||||| || || | Sbjct 222192 GATCCGGAATCCACAAGGCG-TAAA-ACATGTCGCGTGC-ACGCACCTCCTCTTTGCCGG 222248 Query 63289 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 63348 | || || || ||||| || ||| | | | |||| ||||||||||| | ||| |||| Sbjct 222249 TGTTTTTCTTCAGATCCAGAAACTCGAACACATCACCGTGCCACGGTTCGAGGTAGATGG 222308 Query 63349 CCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 63408 | | | |||| || || ||||| || |||||||| | ||||| || || || || || | Sbjct 222309 CAAAAGCTCCCGGGCGCTTGTTGCCACCCTGATCCACGTATCGGGCCGTATTGTTGTACA 222368 Query 63409 CTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCAC 63468 | | || |||||| | | |||||||| || ||||| || || ||||| || | || Sbjct 222369 CGCGCAGCATTGGCACCAACCCGTTTGAAATTCCATTCGTGCCCGAGATGTACGTACCTT 222428 Query 63469 TGGCACGAATATTACTAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 63527 | || |||||| | | | | || || ||||| || || ||| || || | ||| Sbjct 222429 TCGCGCGAATAC-AGTGCACGTTCAGCCCAATTCCGCCAGCAGATTTTGAAATCAGTGCA 222487 Query 63528 CATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAA 63587 || | || | ||| || |||||||| || ||||| || || |||| | || | ||| Sbjct 222488 CACTGCTTCAGCGTATCGTAGATACCTTCAATGCTGTCGTCCGACATGGTGAGCAAGAAA 222547 Query 63588 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 63647 ||| |||| || |||| || |||| ||| | ||| || || || || ||| Sbjct 222548 CAGGACGACAACTGCGGACGTTGCGTAGCCGCCGCAAACATGGTCGGTGAGGCATGGGTA 222607 Query 63648 AACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGA 63707 || | || ||||| |||||||| ||||| || |||| || || || |||| Sbjct 222608 AAGTAGCGCTCCGAAAGCAGATTGTAAGTCTCGATTGCTGCATCGATGTCTTCACCATGA 222667 Query 63708 ATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATT 63767 || || | || || ||||| ||||| ||||| |||| |||||||||||| || || Sbjct 222668 ATGCCGATCGCAACGCGCATCAACATATGCTGCGGTCGCTCAACGATCTTGCCCTTGATC 222727 Query 63768 TTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGT 63827 |||||||||||||| || |||||||| || || ||||||||||| ||| || || Sbjct 222728 TTCAACAAGTAGGACCGCTCTAAAGTTTTGAAGCCGAAATAGTTGTACCCAAAATCGCGA 222787 Query 63828 TCGTAAATAATAACCGAGTTGAG 63850 || ||||| ||| |||| || || Sbjct 222788 TCATAAATTATAGCCGAATTCAG 222810 >seq628 Length=1452984 Score = 114 bits (126), Expect = 2e-20 Identities = 181/257 (70%), Gaps = 3/257 (1%) Strand=Plus/Plus Query 33292 TTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTG 33351 |||||||||| || || || || ||||| || || || || | ||| || ||||| Sbjct 708174 TTAAACATCAGGCAGGCAAAGTCACAGTGTAGTCCTTCATCACGCGAAATCAGCTCGTTC 708233 Query 33352 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT 33411 || || || ||||| ||||| || |||||||| || ||||| || |||| || || Sbjct 708234 GAGAAGGTAAGTCCCGGCATCAGTCCACGCTTCTTCAGCCAGAAAATGGCGGCAAAGCTA 708293 Query 33412 CCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG 33471 || |||||||| ||||| || |||||||| || | | | ||| ||| | || Sbjct 708294 CCGCTGAAGAAGATACCTTCGACAGCAGCAAACGCGACGACACGCTCGCCAAAGTTTGCC 708353 Query 33472 CTGT--CATGT-ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTT 33528 | | | || ||||| || | ||||||||||||||||| || || || |||| |||| Sbjct 708354 TTCTTGCTTGAGATCCAGTTCAGTGCCCAATCGGCCTTCTTCTTCACGCACGGCAGCGTT 708413 Query 33529 TCTATGGCATTAAAGAG 33545 || || ||||| || || Sbjct 708414 TCAATTGCATTGAACAG 708430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622936360718720