Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28]
1,392 sequences; 225,223,604 total letters
Query= NC_007151.1
Length=149622
Score E
Sequences producing significant alignments: (Bits) Value
seq628 174 2e-38
seq872 122 8e-23
seq949 82.4 7e-11
>seq628
Length=1452984
Score = 174 bits (192), Expect = 2e-38
Identities = 175/225 (78%), Gaps = 2/225 (1%)
Strand=Plus/Plus
Query 71670 AAACGCATGATGAACTATGGAATGCTGCTCAGCGACAGCTACGCAATGAGGGTAAAATTC 71729
||||||| || || || ||||| | || |||| ||| | || ||||||||||| |
Sbjct 270522 AAACGCACGACGATCTTTGGAACTCGGCCCAGCTGCAGATGGTAAAGGAGGGTAAAATGC 270581
Query 71730 ACGGATACCTACGCATGTACTGGGCCAAAAAGATTCTCGAGTGGACTCAAACTCCCGAGC 71789
|||| | ||| | |||||||||||||||||||| ||||||||||| |||| ||||||
Sbjct 270582 ACGGCTTTCTAAGGATGTACTGGGCCAAAAAGATACTCGAGTGGACAAAAACGCCCGAGG 270641
Query 71790 AGGCGCTCGAGTATTCTATTTATCTAAACGATAGATACAGTCTCGACGGTCGCGATCCTA 71849
| ||||| || | || ||||| |||||| | |||||||| || || |||||||| |
Sbjct 270642 AAGCGCTTGAAACGGCCATCTATCTGAACGATCGGTACAGTCTGGATGGACGCGATCCGA 270701
Query 71850 ACGGTTATGTCGGTTGCATGTGGAGCATTTGCGGTC-TTCACGAT 71893
||||||| ||||||||||||||| | |||||| | ||||||||
Sbjct 270702 ACGGTTACGTCGGTTGCATGTGG-TCGATTGCGGGCATTCACGAT 270745
>seq872
Length=887634
Score = 122 bits (134), Expect = 8e-23
Identities = 338/508 (67%), Gaps = 19/508 (4%)
Strand=Plus/Plus
Query 147447 AGATGCTGATTGACCACTTGATACTCGCCCGACAGAACTCTTCGTACGTACAAATTACTA 147506
||||| || || ||||| || |||||||||| || || | ||| ||| | ||
Sbjct 221279 AGATGATGGTTCACCACCTGGAACTCGCCCGATAGCACACGTCGGTTGTAAACGTTCGAC 221338
Query 147507 GTAAACGGCTCGAACGACTCGTTGTTACCTAGAATCTGTGCAGTCGTTGCCGTCGGCATG 147566
|| |||||||||| ||||| ||||| || | || ||||| |||| || ||||||||
Sbjct 221339 GTGTACGGCTCGAAGGACTCATTGTTGCCCAATATTTGTGCCGTCGAAGCTGTCGGCATC 221398
Query 147567 TAAGCAATCAATAATGAATTGCGTAAGCCGTGCATAGCCAT-TTCTCGCTTAAGCTCGTC 147625
|| | || || || || || | |||||| | || || ||||| ||| | |||
Sbjct 221399 GGTGCCAGCAGTAGCGAGTTACGAATACCGTGCTTTGCAATCTTCTC-CTTCAACTCTGT 221457
Query 147626 CCAGTTCCAAAGATCATTCGATTGGTTAATATTCCACAAATCAAACTGTAAAAGTCCACA 147685
||||||||| ||||| ||| || || ||||||| || |||||| | ||
Sbjct 221458 CCAGTTCCACAGATCCGTCGGTTCTTTG---TTCCACATTTCGTACTGTAGGACACCCTT 221514
Query 147686 ACTTGCAGGGCTTCCATCGTAAGAATCGTATGTTCCGTGCAGTTTAGCTAGTTCGATACT 147745
|| | || | || || || | ||||||| |||| | || ||| | |||| ||
Sbjct 221515 GCTCACTGGACAACCTTCATACGTCTCGTATGGACCGTCCCGTGCAGCCAATTCGCAGCT 221574
Query 147746 TTGACTT--AGTGCACCATAATAAATAGTTTCTGAAATCTTTTTATTTAAATCTCTAGCC 147803
| ||| ||||| ||||| || || ||||| | || | || ||| | | | |||
Sbjct 221575 TG--CTTCCAGTGCTCCATAGTAGATGGTTTCAAATATTTGTTGATTCAGCTTTTGGGCC 221632
Query 147804 TCTTGGCTGTCGTAGGGCATATCC----AAAATGGCGAACGTATCCGCAAGTCCTTGAAT 147859
|||| ||| ||||| || ||| | |||||| |||| ||| || | || || |
Sbjct 221633 TCTTCGCTTTCGTATGG-ATAGCGCATTAAAATG---AACGCATCGGCCATGCCCTGCAC 221688
Query 147860 ACCGATACCGATGGGTCGGTGTCTGAAATTCG-ATGCTTGAGCGCTAGCCAACGGATAAA 147918
||||||||||||||| | ||| | | || | | |||| || | || ||||||
Sbjct 221689 ACCGATACCGATGGGCCTGTGGCGCATGTTGGAACGCTT-CGCCTCCGGCACCGGATAGT 221747
Query 147919 AATTCAAGTCGATAATTTTATTGAGATT 147946
| || | |||||| ||||| || |||||
Sbjct 221748 AGTTTATGTCGATGATTTTGTTCAGATT 221775
>seq949
Length=1771395
Score = 82.4 bits (90), Expect = 7e-11
Identities = 147/215 (68%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825
|||||||| | || || || || |||||||||| |||||||| | || | || ||
Sbjct 446899 AAAATGCAGATCTTCGTCAAGACTCTAACTGGAAAGACGATCACCCTGGAGGTTGAGCCA 446840
Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885
||| ||||||||| | || || |||||| || || || || || || || |||
Sbjct 446839 TCCGATACCATCGAGAATGTTAAGGCCAAGATTCAGGATAAGGAGGGAATCCCACCAGAT 446780
Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945
|| || | || || | | ||||| || | ||||||| | | | |||||
Sbjct 446779 CAGCAGCGTCTGATCTTTGCTGGCAAGCAGTTGGAAGATGGCCGTACGCTGTCGGACTAC 446720
Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980
|| ||||| || ||||| ||| |||||||||||||
Sbjct 446719 AATATTCAGAAGGAATCGACTCTCCATCTGGTCCT 446685
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478654071274240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |