Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq628 174 2e-38 seq872 122 8e-23 seq949 82.4 7e-11 >seq628 Length=1452984 Score = 174 bits (192), Expect = 2e-38 Identities = 175/225 (78%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 71670 AAACGCATGATGAACTATGGAATGCTGCTCAGCGACAGCTACGCAATGAGGGTAAAATTC 71729 ||||||| || || || ||||| | || |||| ||| | || ||||||||||| | Sbjct 270522 AAACGCACGACGATCTTTGGAACTCGGCCCAGCTGCAGATGGTAAAGGAGGGTAAAATGC 270581 Query 71730 ACGGATACCTACGCATGTACTGGGCCAAAAAGATTCTCGAGTGGACTCAAACTCCCGAGC 71789 |||| | ||| | |||||||||||||||||||| ||||||||||| |||| |||||| Sbjct 270582 ACGGCTTTCTAAGGATGTACTGGGCCAAAAAGATACTCGAGTGGACAAAAACGCCCGAGG 270641 Query 71790 AGGCGCTCGAGTATTCTATTTATCTAAACGATAGATACAGTCTCGACGGTCGCGATCCTA 71849 | ||||| || | || ||||| |||||| | |||||||| || || |||||||| | Sbjct 270642 AAGCGCTTGAAACGGCCATCTATCTGAACGATCGGTACAGTCTGGATGGACGCGATCCGA 270701 Query 71850 ACGGTTATGTCGGTTGCATGTGGAGCATTTGCGGTC-TTCACGAT 71893 ||||||| ||||||||||||||| | |||||| | |||||||| Sbjct 270702 ACGGTTACGTCGGTTGCATGTGG-TCGATTGCGGGCATTCACGAT 270745 >seq872 Length=887634 Score = 122 bits (134), Expect = 8e-23 Identities = 338/508 (67%), Gaps = 19/508 (4%) Strand=Plus/Plus Query 147447 AGATGCTGATTGACCACTTGATACTCGCCCGACAGAACTCTTCGTACGTACAAATTACTA 147506 ||||| || || ||||| || |||||||||| || || | ||| ||| | || Sbjct 221279 AGATGATGGTTCACCACCTGGAACTCGCCCGATAGCACACGTCGGTTGTAAACGTTCGAC 221338 Query 147507 GTAAACGGCTCGAACGACTCGTTGTTACCTAGAATCTGTGCAGTCGTTGCCGTCGGCATG 147566 || |||||||||| ||||| ||||| || | || ||||| |||| || |||||||| Sbjct 221339 GTGTACGGCTCGAAGGACTCATTGTTGCCCAATATTTGTGCCGTCGAAGCTGTCGGCATC 221398 Query 147567 TAAGCAATCAATAATGAATTGCGTAAGCCGTGCATAGCCAT-TTCTCGCTTAAGCTCGTC 147625 || | || || || || || | |||||| | || || ||||| ||| | ||| Sbjct 221399 GGTGCCAGCAGTAGCGAGTTACGAATACCGTGCTTTGCAATCTTCTC-CTTCAACTCTGT 221457 Query 147626 CCAGTTCCAAAGATCATTCGATTGGTTAATATTCCACAAATCAAACTGTAAAAGTCCACA 147685 ||||||||| ||||| ||| || || ||||||| || |||||| | || Sbjct 221458 CCAGTTCCACAGATCCGTCGGTTCTTTG---TTCCACATTTCGTACTGTAGGACACCCTT 221514 Query 147686 ACTTGCAGGGCTTCCATCGTAAGAATCGTATGTTCCGTGCAGTTTAGCTAGTTCGATACT 147745 || | || | || || || | ||||||| |||| | || ||| | |||| || Sbjct 221515 GCTCACTGGACAACCTTCATACGTCTCGTATGGACCGTCCCGTGCAGCCAATTCGCAGCT 221574 Query 147746 TTGACTT--AGTGCACCATAATAAATAGTTTCTGAAATCTTTTTATTTAAATCTCTAGCC 147803 | ||| ||||| ||||| || || ||||| | || | || ||| | | | ||| Sbjct 221575 TG--CTTCCAGTGCTCCATAGTAGATGGTTTCAAATATTTGTTGATTCAGCTTTTGGGCC 221632 Query 147804 TCTTGGCTGTCGTAGGGCATATCC----AAAATGGCGAACGTATCCGCAAGTCCTTGAAT 147859 |||| ||| ||||| || ||| | |||||| |||| ||| || | || || | Sbjct 221633 TCTTCGCTTTCGTATGG-ATAGCGCATTAAAATG---AACGCATCGGCCATGCCCTGCAC 221688 Query 147860 ACCGATACCGATGGGTCGGTGTCTGAAATTCG-ATGCTTGAGCGCTAGCCAACGGATAAA 147918 ||||||||||||||| | ||| | | || | | |||| || | || |||||| Sbjct 221689 ACCGATACCGATGGGCCTGTGGCGCATGTTGGAACGCTT-CGCCTCCGGCACCGGATAGT 221747 Query 147919 AATTCAAGTCGATAATTTTATTGAGATT 147946 | || | |||||| ||||| || ||||| Sbjct 221748 AGTTTATGTCGATGATTTTGTTCAGATT 221775 >seq949 Length=1771395 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 |||||||| | || || || || |||||||||| |||||||| | || | || || Sbjct 446899 AAAATGCAGATCTTCGTCAAGACTCTAACTGGAAAGACGATCACCCTGGAGGTTGAGCCA 446840 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 ||| ||||||||| | || || |||||| || || || || || || || ||| Sbjct 446839 TCCGATACCATCGAGAATGTTAAGGCCAAGATTCAGGATAAGGAGGGAATCCCACCAGAT 446780 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || || | || || | | ||||| || | ||||||| | | | ||||| Sbjct 446779 CAGCAGCGTCTGATCTTTGCTGGCAAGCAGTTGGAAGATGGCCGTACGCTGTCGGACTAC 446720 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || ||||| || ||||| ||| ||||||||||||| Sbjct 446719 AATATTCAGAAGGAATCGACTCTCCATCTGGTCCT 446685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478654071274240