Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq872 242 1e-58 seq497 118 3e-21 >seq872 Length=887634 Score = 242 bits (268), Expect = 1e-58 Identities = 707/1075 (66%), Gaps = 43/1075 (4%) Strand=Plus/Minus Query 363430 ATCAATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATC 363489 ||||| || | || ||||| || |||||||||||||| ||||| ||||| || || || Sbjct 222726 ATCAAGGGCAAGATCGTTGAGCGACCGCAGCATATGTTGATGCGCGTTGCGATCGGCATT 222667 Query 363490 CATTGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTC 363549 ||| | || | ||||| || || || || || || || || | || || Sbjct 222666 CATGGTGAAGACATCGATGCAGCAATCGAGACTTACAATCTGCTTTCGGAGCGCTACTTT 222607 Query 363550 ACGCACGCCACGCCAACAATGTACAATGCTGGAACT-CGTAA--TCCACAGATGTCTTCT 363606 || || ||| | || || |||| ||| | || || || ||| ||| |||| || Sbjct 222606 ACCCATGCCTCACCGACCATGTT---TGCGGCGGCTACGCAACGTCCGCAGTTGTCGTCC 222550 Query 363607 TGCTTTCTT-CTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAA 363665 || |||||| || | ||| |||||| ||| || ||||||| || || || ||| | Sbjct 222549 TG-TTTCTTGCTCACCATGTCGGACGACAGCATTGAAGGTATCTACGATACGCTGAAGCA 222491 Query 363666 TTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTG 363724 ||||| || ||||| || ||| ||||||||||| | | || | ||| | |||| | Sbjct 222490 GTGTGCACTGATTTCAAAATCTGCTGGCGGAATTGGGCTGAACG-TGCACTGTATTCGCG 222432 Query 363725 CACAGAACAGT---TACAT-TCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATG 363780 | ||| || ||||| ||| ||||| ||| || || ||| |||| || ||| Sbjct 222431 C---GAAAGGTACGTACATCTCG-GGCACGAATGGAATTTCAAACGGGTTGGTGCCAATG 222376 Query 363781 CTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGG 363840 || || |||| ||||||| || | ||||| || |||||||| |||||| || Sbjct 222375 CTGCGCGTGTACAACAATACGGCCCGATACGTGGATCAGGGTGGCAACAAGCGCCCGGGA 222316 Query 363841 GCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGG 363900 || ||||| || || ||||| || || | ||| | || |||||||| || || | Sbjct 222315 GCTTTTGCCATCTACCTCGAACCGTGGCACGGTGATGTGTTCGAGTTTCTGGATCTGAAG 222256 Query 363901 AAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCT 363960 |||||||| || |||||||| |||||||||| || |||| || || | ||| || | Sbjct 222255 AAAAACACCGGCAAAGAGGAGGTGCGTGCACGCGACATGTTTTACGCCTTGTGGATTCCG 222196 Query 363961 GACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCT--TTTGCCCACACG 364018 || | || ||| |||| |||||||| | | ||| || | ||| | ||||| |||| Sbjct 222195 GATCTGTTCATGGAGCGGGTGGAGGC--GAACGAAATGTGGAGTCTAATGTGCCCTCACG 222138 Query 364019 AATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATG 364078 | ||||| ||| | || ||| |||||||| | | | || || ||| || Sbjct 222137 ATTGTCCCGGTTTGTCTGATAGCTGGGGTGAAAAGTTCGAGGCACTGTAC------ACTG 222084 Query 364079 AATCGGAGGGAAAGGCTCGTAAGACAATTCCC---------GCACAGAAGCTATGGTTTG 364129 | ||| | ||| |||| |||| | |||||| | | ||||| | Sbjct 222083 GCTACGAGAAAGAGGGTCGT---TTTATTCGCCAGGTGAAGGCACAGGATTTGTGGTTCG 222027 Query 364130 CCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCA 364189 | ||||| || |||||| | || || || ||| |||||| ||||||| ||| | |||| Sbjct 222026 CGATCATTGAATCGCAGGTGGAAACGGGCGTACCGTATATGCTGTACAAGGATGCATGCA 221967 Query 364190 ACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGA 364249 ||||||| |||||||||| || |||| || ||| || ||| | || || |||| Sbjct 221966 ACCGCAAAAGCAACCAGCAGAACATTGGCACCATTAAGTGTTCTAACTTGTGCACTGAGA 221907 Query 364250 TTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTC 364309 || | || ||| | | || || | ||| || || || || || |||||||| || Sbjct 221906 TTGTGGAGTACTCGTCGAAGGATGAAATTGCGGTTTGCAATCTGGCCTCGATCGCACTGA 221847 Query 364310 CGGCGTTTGTAAAA---GATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATC 364366 ||| |||||| ||| | || | || | | || | || || || | Sbjct 221846 ACATGTTCGTAAAATCCGATAGGACGTACGATTTCGTAAAGCTGAAGGATGTCGCCAAGA 221787 Query 364367 ATGCTACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCG 364426 | || ||||||| |||| | ||||||| || || ||||| | || || || Sbjct 221786 TAGTAACACGCAATCTGAACAAAATCATCGACATAAACTACTATCCGGTGCCGGAGGCGA 221727 Query 364427 AGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGA 364481 ||||||| || ||||| || | || || ||| | ||||| |||||| | || || Sbjct 221726 AGCGTTCCAACATGCGCCACAGGCCCATCGGTATCGGTGTGCAGGGCATGGCCGA 221672 Score = 102 bits (112), Expect = 2e-16 Identities = 287/439 (65%), Gaps = 4/439 (1%) Strand=Plus/Minus Query 364720 AAGCATGGTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAG 364779 ||||| |||| ||| ||||| || | || || ||||| || ||||| || ||||| Sbjct 221433 AAGCACGGTATTCGTAACTCGCTACTGCTGGCACCGATGCCGACAGCTTCGACGGCACAA 221374 Query 364780 ATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTT 364839 || | || ||||| |||| |||||| |||| || || |||| || || || Sbjct 221373 ATATTGGGCAACAATGAGTCCTTCGAGCCGTACACGTCGAACGTTTACAACCGACGTGTG 221314 Query 364840 CTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGG 364899 || || || || || | ||| || || | | || | | ||||| | | || Sbjct 221313 CTATCGGGCGAGTTCCAGGTGGTGAACCATCATCTGCTGCAAGATCTAACAGCGATGGGT 221254 Query 364900 CTGTGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATT 364959 |||||| | |||||||||| | ||| | || || || || | || |||||| Sbjct 221253 TTGTGGGATCTTGACATGAAGAACAACATCTTGTCCAACAACGGATCGATTCAAAACATT 221194 Query 364960 CCAGGATTTCCAGAAGA--TCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGC 365017 | | | ||| | || || | ||| | |||| || |||||||| || || || Sbjct 221193 GAATCAATACCAAAGGAAATCCGCGACCTGT--ACAAGACGGTATGGGAGATCTCGGTGA 221136 Query 365018 GAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTA 365077 ||| ||| | |||||||||||||| || || |||||| |||| || || |||| Sbjct 221135 AAACATCCATCAAAATGGCGGCCGATCGGGGAGCGTTTATCGATCAGTCACAATCATTTA 221076 Query 365078 ACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGA 365137 || || | || | |||| | || | |||||| || || || |||||||||| ||||| Sbjct 221075 ACATACACGTGGCCGAGCCGAACTATGGCAAGCTGACGTCGATCCATTTCTACGCGTGGA 221016 Query 365138 AATCCGGTCTTAAGACAGG 365156 | || || ||||| || Sbjct 221015 AGATGGGACTAAAGACGGG 220997 >seq497 Length=402095 Score = 118 bits (130), Expect = 3e-21 Identities = 217/310 (70%), Gaps = 6/310 (2%) Strand=Plus/Plus Query 111488 AGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAAC 111547 |||||| | || |||||||| || ||||| ||||| |||||||||||| | |||||||| Sbjct 123924 AGGTGACTTAGGTCCAGTTTATGGCTTTCAGTGGCGTCACTTTGGTGCAAAATACAAAAC 123983 Query 111548 CATGC-ACGACTCATATGATTCACAGGGAACTGATCAATTA-CAGAATGTCATTGATCAA 111605 |||| ||||| || |||||||| || || || ||||| || || | || Sbjct 123984 -ATGCCACGACGATTACACAGGACAGGGAATCGACCAGTTGGCAGAA-GTGATACACAAA 124041 Query 111606 ATTAAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCATTG 111665 || || ||||| || |||||| || || ||||| || ||||| || | | Sbjct 124042 ATAAAAAACAATCCTTACGATCGTCGAATCATCATGAGCGCTTGGAATCCTTCCGATATT 124101 Query 111666 GAAAAAATGGCACTTCCACCATGTCATCTTATGTGC-CAGTTTTATGTACACGACGGGAT 111724 || ||||| | || || ||||| || | || ||||||| ||| | | || Sbjct 124102 CCCAACATGGCCTTACCGCCGTGTCA-CTGCTTGGCACAGTTTTTTGTTGGCAATGGAGA 124160 Query 111725 GCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATAT 111784 | | || ||||| |||||||||||||| |||||| | || | |||||||||||||| || Sbjct 124161 GTTGTCTTGCCAGATGTATCAGCGATCGGCTGATGTAGGATTGGGTGTTCCGTTTAACAT 124220 Query 111785 TGCAAGTTAC 111794 ||| || ||| Sbjct 124221 TGCTAGCTAC 124230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303330354688544