Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq872 208 7e-49 seq575 149 6e-31 seq672 120 3e-22 seq628 87.8 2e-12 >seq872 Length=887634 Score = 208 bits (230), Expect = 7e-49 Identities = 976/1522 (64%), Gaps = 62/1522 (4%) Strand=Plus/Plus Query 145055 TGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAG 145114 || || || ||||| |||||||| | | |||||| || || ||||| |||||| | Sbjct 221285 TGGTTCACCACCTGGAACTCGCCCGATAGCACACGTCGGTTGTAAACGTTCGACGTGTAC 221344 Query 145115 GGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCC 145174 || || || ||||| || ||||||| ||||| || |||| || || ||||| ||| Sbjct 221345 GGCTCGAAGGACTCATTGTTGCCCAATATTTGTGCCGTCGAAGCTGTCGGCATCGGTGCC 221404 Query 145175 ACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCC 145234 | || || || || || | |||||||| || | ||||| | | ||| | | Sbjct 221405 AGCAGTAGCGAGTTACGAATACCGTGCTTTGCAATCTTCTCCTTCAACTCTGTCCAGTTC 221464 Query 145235 CATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGG 145294 || || ||||| || |||||| |||||||| | | |||| ||| | || Sbjct 221465 CACAGATCCGTCGGTTCTTTGTTCCACATTTCGTACTGTAGGACACCCTTGCTCACTGGA 221524 Query 145295 CTGCCTTGAAAGGAACTGTA---ACTGCCCCAAGTTTTGGCGAGCTCGCAACTCGCCTCC 145351 | |||| | | | ||| || | ||| | || | ||||| || || ||| Sbjct 221525 CAACCTTCATACGTCTCGTATGGACCGTCCCGTGCA---GCCAATTCGCAGCTTGCTTCC 221581 Query 145352 AGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAG-CAGCATC---GCTTCATC 145407 || || || | || || || || ||||| |||| |||| | || || || Sbjct 221582 AGTGCTCCATAGTAGATGGTTTCAAATATTTG----TTGATTCAGCTTTTGGGCCTCTTC 221637 Query 145408 GCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCC 145467 ||| ||||| || ||||| | | || |||||||| | ||||| | || | || Sbjct 221638 GCTTTCGTATGGATAGCGCATTAAAATGAACGCATCGGCCATGCCCTGCACACCGATACC 221697 Query 145468 GATGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATA-TCGATTACGGT 145526 |||||||| || ||||||| | ||||| | | ||||| | | ||| | | Sbjct 221698 GATGGGCCTGTGGCGCATGTTGGAACGCTTCGCCTCCGGCACCGGATAGTAGTTTATG-T 221756 Query 145527 CGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGT 145586 |||| ||||| |||| || || ||||| ||| | | | | || |||| | || | Sbjct 221757 CGATGATTTTGTTCAGATTGCGTGTTACTATCTTGGCGACATCCTTCAGCTTTACGAAAT 221816 Query 145587 CAAACCGAGCCTCG---TCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTAC 145643 | || ||| | |||| || | || | |||||||| |||| ||| | Sbjct 221817 CGTACGTCCTATCGGATTTTACGAACA------TGTTCAGTGCGATCGAGGCCAGATTGC 221870 Query 145644 AAACTGCCGTCTCCTCGG-CGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACAT 145702 |||| || | || || || || ||| | || ||||| | |||||| || ||| Sbjct 221871 AAACCGCAATTTCATCCTTCGACGA-GTACTCCACAATCTCAGTGCACAAGTTAGAACAC 221929 Query 145703 TTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATG 145762 || ||||| || | || ||||| || ||||| | |||||| || |||||||| ||||| Sbjct 221930 TTAATGGTGCCAATGTTCTGCTGGTTGCTTTTGCGGTTGCATGCATCCTTGTACAGCATA 221989 Query 145763 TACGGTCCGCCAGTCTCCACCTGCGTCTCCACGATAA--AACGGTGCAAGTCCTGCGCAC 145820 |||||| |||| || |||||||||| || | ||| ||| ||| ||||| || Sbjct 221990 TACGGTACGCCCGTTTCCACCTGCGATTCAATGATCGCGAACCA--CAAATCCTGTGCCT 222047 Query 145821 GCACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGG 145880 |||||| | | || ||||||| ||||| |||| || |||| ||| Sbjct 222048 TCACCTGGCGAATAAAACGACCCTCTTTCTCGTAGCCAGTGTACAGTGCCTCGAACTTTT 222107 Query 145881 AACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGT 145940 ||| ||| ||| |||| |||||||| | || || ||||| || ||| | ||| Sbjct 222108 CACCCCAGCTATCAGACAAACCGGGACAATCGTGAGGGCACATTAGACTCCACATTTCGT 222167 Query 145941 TGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCG 146000 | || | || |||||||| |||| ||| || | ||||| ||||| | || |||||| | Sbjct 222168 TCGCCTCCACCCGCTCCATGAACAGATCCGGAATCCACAAGGCGTAAAACATGTCGCGTG 222227 Query 146001 CTTTGCAA-TCCTCAGCACCCATGTTTCGCTTCAAATTAAGCACACTATAG-ATGTCCGC 146058 | ||| ||||| || ||||| ||||| || || | ||| | | || | Sbjct 222228 CAC-GCACCTCCTCTTTGCCGGTGTTTTTCTTCAGATCCAGAA-ACTCGAACACATCACC 222285 Query 146059 GTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTTG---CCACCCTGGTCCAC 146115 |||||||||||| | |||| ||| | ||||| || ||| |||||||| ||||| Sbjct 222286 GTGCCACGGTTCGAGGTAGATGGCAAAAGCTCCCGGGCGCTTGTTGCCACCCTGATCCAC 222345 Query 146116 GTGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTT 146175 || || || | ||||| | ||||||| ||| ||| | | ||| | | | || || Sbjct 222346 GTATCGGGCCGTATTGTTGTACACGCGCAGCATTGGCACCAACCCGTTTGAAATTCCATT 222405 Query 146176 CGT---AGAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACC 146232 ||| ||| || || || | ||| | || || || |||| || | || Sbjct 222406 CGTGCCCGAG---ATGTACGTACCTTTCGCGCGAATACAGTGCACGTTCAGCCCAATTCC 222462 Query 146233 GCCGCCGTACTTGGATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCGTCAATGCT 146292 ||| | | || || || || || | ||||| |||||||| || |||||||| Sbjct 222463 GCCAGCAGATTTTGAAATCAGTGCACACTGCTTCAGCGTATCGTAGATACCTTCAATGCT 222522 Query 146293 ATCGCTTCGA-ATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGCCG 146351 ||| | ||| ||| ||||| || || || ||| ||||| |||| |||||| Sbjct 222523 GTCG-TCCGACATGGTGAGCAAGAAACAGGACGACAACTGCGGACGTTGCGTAGCCGCCG 222581 Query 146352 AGAACAACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCTCATCATCCGA---TACGTTT 146408 |||| ||||| || || ||||| | || | | | || || || | Sbjct 222582 CAAACATGGTCGGTGAGGCATGGGTAAA---GTAGCGCTCCGAAAGCAGATTGTAAGTCT 222638 Query 146409 CGATAGCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTT 146468 |||| || | | ||||| || ||||||||||| | || |||||||| | ||| || | Sbjct 222639 CGATTGCTGCATCGATGTCTTCACCATGAATGCCGATCGCAACGCGCATCAACATATGCT 222698 Query 146469 GGGGCCGCTCCGCCA-CTTG--ATTGTCAATCTTTAACAAATAG--CCGTTCTCCAGGGT 146523 | || ||||| | | |||| ||| ||||| ||||| ||| ||| ||| | || Sbjct 222699 GCGGTCGCTCAACGATCTTGCCCTTG---ATCTTCAACAAGTAGGACCG--CTCTAAAGT 222753 Query 146524 TTTGTATCCGAAAAATTTGTAC 146545 |||| | |||||| | |||||| Sbjct 222754 TTTGAAGCCGAAATAGTTGTAC 222775 >seq575 Length=281738 Score = 149 bits (164), Expect = 6e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||||| || ||||| | ||| | |||||||||||| |||||||| || || | Sbjct 24172 CCACCGCGCAGGCGAAGCACCAGATGAAGGGTCGACTCCTTCTGAATGTTATAGTCAGAC 24113 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| |||||||| || ||| |||| ||||||||||| ||||| ||| Sbjct 24112 AGTGTGCGTCCATCCTCCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCCGGCGGG 24053 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || || || ||| ||| ||| | | ||| | ||||| | || ||||| Sbjct 24052 ATGCCCTCCTTATCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACC 23993 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| || ||||| || || ||||| ||||| |||||||| Sbjct 23992 TCAAGGGTAATAGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 23946 >seq672 Length=1102954 Score = 120 bits (132), Expect = 3e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | |||||||| | ||| | ||| || ||||| ||||||||||| || | Sbjct 391577 CCACCACGAAGTCGCAGCACCAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCCGAC 391636 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| |||||||| || ||| |||| | ||||||||| || || || Sbjct 391637 AGAGTGCGGCCATCCTCCAGCTGCTTACCGGCGAAGATGAGACGCTGCTGATCTGGGGGA 391696 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTG-CTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||||| || || ||| | | || ||| | | || | || || | | ||||| Sbjct 391697 ATTCCTTCCTTATC-CTGAATCTTTGCCTTCACATTTTCGATCGTGTCCGAAGGCTCGAC 391755 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236 || | || | ||| || ||||| || ||||| |||||||||||||||| Sbjct 391756 CTCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCATGA 391805 >seq628 Length=1452984 Score = 87.8 bits (96), Expect = 2e-12 Identities = 277/423 (65%), Gaps = 5/423 (1%) Strand=Plus/Minus Query 46063 CTGCTTAATGCGTTTGAACGTATGCCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAG 46122 ||| | ||||| ||||| ||||||||||| ||||| |||| ||||| |||| Sbjct 708430 CTGTTCAATGCAATTGAAACGCTGCCGTGCGTGAAGAAGAAGGCCGATTGGGCACTGAAC 708371 Query 46123 TGGATCAACAGCAGCACCGCGACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAG 46182 |||||| |||| | || | || | ||||||| | || || ||||| ||| || Sbjct 708370 TGGATCTCAAGCAAGAAGGCAAACTTTGGCGAGCGTGTCGTCGCGTTTGCTGCTGTCGAA 708311 Query 46183 GGCGTCtttttttCTGGCAGTTTTGCCGCCATCTTTTACATCAA-AACCAAGGGCATCAT 46241 || |||| || || || ||||||||||| || | | || || | || | | || Sbjct 708310 GGTATCTTCTTCAGCGGTAGCTTTGCCGCCATTTTCTGGCTGAAGAAGCGTGGAC-TGAT 708252 Query 46242 GCCCGGCCTGACGTTTAGCAACGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTT 46301 ||| || || || || ||||||||||| ||||| || || || || || ||||| Sbjct 708251 GCCGGGACTTACCTTCTCGAACGAGCTGATTTCGCGTGATGAAGGACTACACTGTGACTT 708192 Query 46302 TGCGTGTCTCTACTATAACACTCGCGTGCACGACAAGCTTGCGCCCGACACCGTGCTGAG 46361 ||| || || | ||| || || || || || ||| || || |||| | Sbjct 708191 TGCCTGCCTGATGTTTAAGTATCTGGTACA-GA-AACCTT-CGAAGGAGCGCGTGACGGC 708135 Query 46362 CATGTTCAAGGAGGCGGTGGCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGC 46421 ||| || || ||||| || || ||| |||| ||||| ||| |||||||| | | Sbjct 708134 CATCATCCGTGATGCGGTTGCAATCGAGCAGGAATTTTTGACGAAAGCACTGCCAGTCGA 708075 Query 46422 CCTGCTGGGCATGAACGCACAGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACT 46481 |||| || |||||| | |||| | ||||| ||||| ||||| || || | Sbjct 708074 TATGCTCGGTATGAACTGCGATCTGATGTCACAGTACATTGAGTTCGTAGCCGATCGTTT 708015 Query 46482 GCT 46484 ||| Sbjct 708014 GCT 708012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472004586977280