Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28]
1,392 sequences; 225,223,604 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq872 208 7e-49
seq575 149 6e-31
seq672 120 3e-22
seq628 87.8 2e-12
>seq872
Length=887634
Score = 208 bits (230), Expect = 7e-49
Identities = 976/1522 (64%), Gaps = 62/1522 (4%)
Strand=Plus/Plus
Query 145055 TGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAG 145114
|| || || ||||| |||||||| | | |||||| || || ||||| |||||| |
Sbjct 221285 TGGTTCACCACCTGGAACTCGCCCGATAGCACACGTCGGTTGTAAACGTTCGACGTGTAC 221344
Query 145115 GGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCC 145174
|| || || ||||| || ||||||| ||||| || |||| || || ||||| |||
Sbjct 221345 GGCTCGAAGGACTCATTGTTGCCCAATATTTGTGCCGTCGAAGCTGTCGGCATCGGTGCC 221404
Query 145175 ACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCC 145234
| || || || || || | |||||||| || | ||||| | | ||| | |
Sbjct 221405 AGCAGTAGCGAGTTACGAATACCGTGCTTTGCAATCTTCTCCTTCAACTCTGTCCAGTTC 221464
Query 145235 CATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGG 145294
|| || ||||| || |||||| |||||||| | | |||| ||| | ||
Sbjct 221465 CACAGATCCGTCGGTTCTTTGTTCCACATTTCGTACTGTAGGACACCCTTGCTCACTGGA 221524
Query 145295 CTGCCTTGAAAGGAACTGTA---ACTGCCCCAAGTTTTGGCGAGCTCGCAACTCGCCTCC 145351
| |||| | | | ||| || | ||| | || | ||||| || || |||
Sbjct 221525 CAACCTTCATACGTCTCGTATGGACCGTCCCGTGCA---GCCAATTCGCAGCTTGCTTCC 221581
Query 145352 AGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAG-CAGCATC---GCTTCATC 145407
|| || || | || || || || ||||| |||| |||| | || || ||
Sbjct 221582 AGTGCTCCATAGTAGATGGTTTCAAATATTTG----TTGATTCAGCTTTTGGGCCTCTTC 221637
Query 145408 GCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCC 145467
||| ||||| || ||||| | | || |||||||| | ||||| | || | ||
Sbjct 221638 GCTTTCGTATGGATAGCGCATTAAAATGAACGCATCGGCCATGCCCTGCACACCGATACC 221697
Query 145468 GATGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATA-TCGATTACGGT 145526
|||||||| || ||||||| | ||||| | | ||||| | | ||| | |
Sbjct 221698 GATGGGCCTGTGGCGCATGTTGGAACGCTTCGCCTCCGGCACCGGATAGTAGTTTATG-T 221756
Query 145527 CGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGT 145586
|||| ||||| |||| || || ||||| ||| | | | | || |||| | || |
Sbjct 221757 CGATGATTTTGTTCAGATTGCGTGTTACTATCTTGGCGACATCCTTCAGCTTTACGAAAT 221816
Query 145587 CAAACCGAGCCTCG---TCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTAC 145643
| || ||| | |||| || | || | |||||||| |||| ||| |
Sbjct 221817 CGTACGTCCTATCGGATTTTACGAACA------TGTTCAGTGCGATCGAGGCCAGATTGC 221870
Query 145644 AAACTGCCGTCTCCTCGG-CGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACAT 145702
|||| || | || || || || ||| | || ||||| | |||||| || |||
Sbjct 221871 AAACCGCAATTTCATCCTTCGACGA-GTACTCCACAATCTCAGTGCACAAGTTAGAACAC 221929
Query 145703 TTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATG 145762
|| ||||| || | || ||||| || ||||| | |||||| || |||||||| |||||
Sbjct 221930 TTAATGGTGCCAATGTTCTGCTGGTTGCTTTTGCGGTTGCATGCATCCTTGTACAGCATA 221989
Query 145763 TACGGTCCGCCAGTCTCCACCTGCGTCTCCACGATAA--AACGGTGCAAGTCCTGCGCAC 145820
|||||| |||| || |||||||||| || | ||| ||| ||| ||||| ||
Sbjct 221990 TACGGTACGCCCGTTTCCACCTGCGATTCAATGATCGCGAACCA--CAAATCCTGTGCCT 222047
Query 145821 GCACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGG 145880
|||||| | | || ||||||| ||||| |||| || |||| |||
Sbjct 222048 TCACCTGGCGAATAAAACGACCCTCTTTCTCGTAGCCAGTGTACAGTGCCTCGAACTTTT 222107
Query 145881 AACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGT 145940
||| ||| ||| |||| |||||||| | || || ||||| || ||| | |||
Sbjct 222108 CACCCCAGCTATCAGACAAACCGGGACAATCGTGAGGGCACATTAGACTCCACATTTCGT 222167
Query 145941 TGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCG 146000
| || | || |||||||| |||| ||| || | ||||| ||||| | || |||||| |
Sbjct 222168 TCGCCTCCACCCGCTCCATGAACAGATCCGGAATCCACAAGGCGTAAAACATGTCGCGTG 222227
Query 146001 CTTTGCAA-TCCTCAGCACCCATGTTTCGCTTCAAATTAAGCACACTATAG-ATGTCCGC 146058
| ||| ||||| || ||||| ||||| || || | ||| | | || |
Sbjct 222228 CAC-GCACCTCCTCTTTGCCGGTGTTTTTCTTCAGATCCAGAA-ACTCGAACACATCACC 222285
Query 146059 GTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTTG---CCACCCTGGTCCAC 146115
|||||||||||| | |||| ||| | ||||| || ||| |||||||| |||||
Sbjct 222286 GTGCCACGGTTCGAGGTAGATGGCAAAAGCTCCCGGGCGCTTGTTGCCACCCTGATCCAC 222345
Query 146116 GTGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTT 146175
|| || || | ||||| | ||||||| ||| ||| | | ||| | | | || ||
Sbjct 222346 GTATCGGGCCGTATTGTTGTACACGCGCAGCATTGGCACCAACCCGTTTGAAATTCCATT 222405
Query 146176 CGT---AGAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACC 146232
||| ||| || || || | ||| | || || || |||| || | ||
Sbjct 222406 CGTGCCCGAG---ATGTACGTACCTTTCGCGCGAATACAGTGCACGTTCAGCCCAATTCC 222462
Query 146233 GCCGCCGTACTTGGATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCGTCAATGCT 146292
||| | | || || || || || | ||||| |||||||| || ||||||||
Sbjct 222463 GCCAGCAGATTTTGAAATCAGTGCACACTGCTTCAGCGTATCGTAGATACCTTCAATGCT 222522
Query 146293 ATCGCTTCGA-ATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGCCG 146351
||| | ||| ||| ||||| || || || ||| ||||| |||| ||||||
Sbjct 222523 GTCG-TCCGACATGGTGAGCAAGAAACAGGACGACAACTGCGGACGTTGCGTAGCCGCCG 222581
Query 146352 AGAACAACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCTCATCATCCGA---TACGTTT 146408
|||| ||||| || || ||||| | || | | | || || || |
Sbjct 222582 CAAACATGGTCGGTGAGGCATGGGTAAA---GTAGCGCTCCGAAAGCAGATTGTAAGTCT 222638
Query 146409 CGATAGCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTT 146468
|||| || | | ||||| || ||||||||||| | || |||||||| | ||| || |
Sbjct 222639 CGATTGCTGCATCGATGTCTTCACCATGAATGCCGATCGCAACGCGCATCAACATATGCT 222698
Query 146469 GGGGCCGCTCCGCCA-CTTG--ATTGTCAATCTTTAACAAATAG--CCGTTCTCCAGGGT 146523
| || ||||| | | |||| ||| ||||| ||||| ||| ||| ||| | ||
Sbjct 222699 GCGGTCGCTCAACGATCTTGCCCTTG---ATCTTCAACAAGTAGGACCG--CTCTAAAGT 222753
Query 146524 TTTGTATCCGAAAAATTTGTAC 146545
|||| | |||||| | ||||||
Sbjct 222754 TTTGAAGCCGAAATAGTTGTAC 222775
>seq575
Length=281738
Score = 149 bits (164), Expect = 6e-31
Identities = 169/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
|||||||||| || ||||| | ||| | |||||||||||| |||||||| || || |
Sbjct 24172 CCACCGCGCAGGCGAAGCACCAGATGAAGGGTCGACTCCTTCTGAATGTTATAGTCAGAC 24113
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||||| ||||| |||||||| || ||| |||| ||||||||||| ||||| |||
Sbjct 24112 AGTGTGCGTCCATCCTCCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCCGGCGGG 24053
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || || || ||| ||| ||| | | ||| | ||||| | || |||||
Sbjct 24052 ATGCCCTCCTTATCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACC 23993
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | ||||| || ||||| || || ||||| ||||| ||||||||
Sbjct 23992 TCAAGGGTAATAGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 23946
>seq672
Length=1102954
Score = 120 bits (132), Expect = 3e-22
Identities = 166/230 (72%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| || | |||||||| | ||| | ||| || ||||| ||||||||||| || |
Sbjct 391577 CCACCACGAAGTCGCAGCACCAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCCGAC 391636
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||||| ||||| |||||||| || ||| |||| | ||||||||| || || ||
Sbjct 391637 AGAGTGCGGCCATCCTCCAGCTGCTTACCGGCGAAGATGAGACGCTGCTGATCTGGGGGA 391696
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTG-CTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186
|||||||| || || ||| | | || ||| | | || | || || | | |||||
Sbjct 391697 ATTCCTTCCTTATC-CTGAATCTTTGCCTTCACATTTTCGATCGTGTCCGAAGGCTCGAC 391755
Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236
|| | || | ||| || ||||| || ||||| ||||||||||||||||
Sbjct 391756 CTCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCATGA 391805
>seq628
Length=1452984
Score = 87.8 bits (96), Expect = 2e-12
Identities = 277/423 (65%), Gaps = 5/423 (1%)
Strand=Plus/Minus
Query 46063 CTGCTTAATGCGTTTGAACGTATGCCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAG 46122
||| | ||||| ||||| ||||||||||| ||||| |||| ||||| ||||
Sbjct 708430 CTGTTCAATGCAATTGAAACGCTGCCGTGCGTGAAGAAGAAGGCCGATTGGGCACTGAAC 708371
Query 46123 TGGATCAACAGCAGCACCGCGACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAG 46182
|||||| |||| | || | || | ||||||| | || || ||||| ||| ||
Sbjct 708370 TGGATCTCAAGCAAGAAGGCAAACTTTGGCGAGCGTGTCGTCGCGTTTGCTGCTGTCGAA 708311
Query 46183 GGCGTCtttttttCTGGCAGTTTTGCCGCCATCTTTTACATCAA-AACCAAGGGCATCAT 46241
|| |||| || || || ||||||||||| || | | || || | || | | ||
Sbjct 708310 GGTATCTTCTTCAGCGGTAGCTTTGCCGCCATTTTCTGGCTGAAGAAGCGTGGAC-TGAT 708252
Query 46242 GCCCGGCCTGACGTTTAGCAACGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTT 46301
||| || || || || ||||||||||| ||||| || || || || || |||||
Sbjct 708251 GCCGGGACTTACCTTCTCGAACGAGCTGATTTCGCGTGATGAAGGACTACACTGTGACTT 708192
Query 46302 TGCGTGTCTCTACTATAACACTCGCGTGCACGACAAGCTTGCGCCCGACACCGTGCTGAG 46361
||| || || | ||| || || || || || ||| || || |||| |
Sbjct 708191 TGCCTGCCTGATGTTTAAGTATCTGGTACA-GA-AACCTT-CGAAGGAGCGCGTGACGGC 708135
Query 46362 CATGTTCAAGGAGGCGGTGGCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGC 46421
||| || || ||||| || || ||| |||| ||||| ||| |||||||| | |
Sbjct 708134 CATCATCCGTGATGCGGTTGCAATCGAGCAGGAATTTTTGACGAAAGCACTGCCAGTCGA 708075
Query 46422 CCTGCTGGGCATGAACGCACAGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACT 46481
|||| || |||||| | |||| | ||||| ||||| ||||| || || |
Sbjct 708074 TATGCTCGGTATGAACTGCGATCTGATGTCACAGTACATTGAGTTCGTAGCCGATCGTTT 708015
Query 46482 GCT 46484
|||
Sbjct 708014 GCT 708012
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 472004586977280
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