Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq516 161 7e-35 seq987 140 2e-28 seq45 107 1e-18 seq575 100 2e-16 seq672 98.7 7e-16 seq32 89.7 3e-13 seq949 87.8 1e-12 >seq516 Length=331534 Score = 161 bits (178), Expect = 7e-35 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221 |||| ||| ||||||| |||||||||||| | || |||||||| ||||| ||||| Sbjct 308591 ATGGCTACCGTGAACGTGAATCGTAATGTGACCGATATCTTCTACCGTTACAAGATGCCT 308650 Query 6222 CGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATG 6281 |||||| || ||||| |||||||| ||||| || |||||||| || || || |||||| Sbjct 308651 CGCATCAATGCAAAGGTGGAGGGTAAAGGAAATGGCATTAAAACGGTGATCGTGAACATG 308710 Query 6282 CCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGC 6341 | || || |||| || | || || ||||| ||||| |||||||| || ||||| ||| Sbjct 308711 GCCGAGGTGGCTAGAGCTATTGGTCGTCCTGCAACCTATCCGACGAAGTACTTCGGTTGC 308770 Query 6342 GAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373 |||||||| || || || || || || || || Sbjct 308771 GAACTTGGAGCGCAAACTCAATTCGACCATAA 308802 Score = 134 bits (148), Expect = 9e-27 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434 || || |||||||| || || || ||||| | |||||||||||||||| | || ||| Sbjct 308879 AATGAACGCTTCATTGTGAATGGTTCGCACGATGCTGCCAAGCTGCAGGATCTGCTCGAC 308938 Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATT 6494 || || || |||||||| || || |||| ||| |||||||| |||||||| || || | Sbjct 308939 GGTTTCATCCGCAAGTTCGTCCTTTGTCCGGAGTGCGATAATCCGGAGACGGATCTGCTG 308998 Query 6495 GTGTCTACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGCAAG 6554 || || | |||| |||||||| ||||| ||||| |||||||||| || || | Sbjct 308999 GTATCGTCGAAGAAGGGTACCATCTCGCAGGGTTGCAAGGCGTGCGGTTTTCACGGACCG 309058 Query 6555 CTGGATTTATCACACAAACTCAACACCTTCATACTGAAGAATCCTCC 6601 || ||| | ||||| | ||||| ||||| | ||||| || || Sbjct 309059 CTCGATGTGAACCACAAGGTGAACACGTTCATTATCAAGAACCCACC 309105 >seq987 Length=62723 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 50069 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAGGGAATCTCGT 50010 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 50009 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 49975 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 61560 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAGGGAATCTCGT 61501 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 61500 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 61466 >seq45 Length=1954 Score = 107 bits (118), Expect = 1e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1189 CTCTCTATTCAGAGTGCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCAT 1130 Query 20007 GGTAATATTTAGCCTTA 20023 || |||||||||| ||| Sbjct 1129 GGCAATATTTAGCTTTA 1113 >seq575 Length=281738 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | || || | ||||| |||||| || |||||| ||||| || || ||||| Sbjct 24173 ACCACCGCGCAGGCGAAGCACCAGATGAAGGGTCGACTCCTTCTGAATGTTATAGTCAGA 24114 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 || ||| | || || | || || ||||| || || | || || ||||| | || Sbjct 24113 CAGTGTGCGTCCATCCTCCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCCGGCGG 24054 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 || ||| || || ||| || || ||||||||||| || ||||| || || Sbjct 24053 GATGCCCTCCTTATCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGAC 23994 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | |||||||| |||||||| | |||||| ||||| |||||||| Sbjct 23993 CTCAAGGGTAATAGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 23946 >seq672 Length=1102954 Score = 98.7 bits (108), Expect = 7e-16 Identities = 162/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 38088 TTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCA 38147 |||||||| | | |||| ||||| |||||| || ||||| ||||| ||||| || Sbjct 391574 TTACCACCACGAAGTCGCAGCACCAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCC 391633 Query 38148 GACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAG 38207 |||| | || | || || | || || ||||| || || || || || ||||| | | Sbjct 391634 GACAGAGTGCGGCCATCCTCCAGCTGCTTACCGGCGAAGATGAGACGCTGCTGATCTGGG 391693 Query 38208 GGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCA 38267 || | ||||| || ||| ||| ||| ||||||||| | || || || | || Sbjct 391694 GGAATTCCTTCCTTATCCTGAATCTTTGCCTTCACATTTTCGATCGTGTCCGAAGGCTCG 391753 Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 || || | ||| || || || || || | ||||||||||| ||||||||| || Sbjct 391754 ACCTCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCATGATT 391807 >seq32 Length=2000 Score = 89.7 bits (98), Expect = 3e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| ||| |||||||||||||||||||||||||||| ||||||||||| Sbjct 716 CTCTCTATTCAGAGTGCTTTTCAACTTTCCCTCACGGTACTTGTCTTCTATCGGTCTCAT 775 Query 20007 GGTAATATTTAGCCTTA 20023 ||| |||||||| ||| Sbjct 776 GGTGGTATTTAGCTTTA 792 >seq949 Length=1771395 Score = 87.8 bits (96), Expect = 1e-12 Identities = 167/245 (68%), Gaps = 1/245 (0%) Strand=Plus/Plus Query 38078 AATCCAATCATTA-CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAA 38136 || ||||||| || ||||| | | ||| | |||| ||| ||||| ||||| |||| Sbjct 446656 AAACCAATCAATATCCACCACGTAGACGAAGGACCAGATGGAGAGTCGATTCCTTCTGAA 446715 Query 38137 TATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTT 38196 ||||||| || |||| ||| | || || || || || || ||||| || || || | Sbjct 446716 TATTGTAGTCCGACAGCGTACGGCCATCTTCCAACTGCTTGCCAGCAAAGATCAGACGCT 446775 Query 38197 GTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTAT 38256 | ||||| | |||| || || || ||| ||| || ||| ||||||| || |||| Sbjct 446776 GCTGATCTGGTGGGATTCCCTCCTTATCCTGAATCTTGGCCTTAACATTCTCGATGGTAT 446835 Query 38257 CTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCA 38316 | ||||| || | || || || || || || | || || ||||| ||||||| Sbjct 446836 CGGATGGCTCAACCTCCAGGGTGATCGTCTTTCCAGTTAGAGTCTTGACGAAGATCTGCA 446895 Query 38317 TGTTT 38321 | ||| Sbjct 446896 TTTTT 446900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334941517620752