Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28]
1,392 sequences; 225,223,604 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq628 183 3e-41
seq3 111 2e-19
>seq628
Length=1452984
Score = 183 bits (202), Expect = 3e-41
Identities = 310/449 (69%), Gaps = 0/449 (0%)
Strand=Plus/Plus
Query 92896 CTTTTCACCGATCAACTCGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACAT 92955
||| |||| | |||||| ||| || | ||| ||||| || || |||||||| |||||
Sbjct 707990 CTTGTCACAGCCCAACTCCAACAGCAAACGATCGGCTACGAACTCAATGTACTGTGACAT 708049
Query 92956 CAAATCACAATTCATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTC 93015
|| ||| || ||||| || || | | || || || || | ||||| || || | |||
Sbjct 708050 CAGATCGCAGTTCATACCGAGCATATCGACTGGCAGTGCTTTCGTCAAAAATTCCTGCTC 708109
Query 93016 GATTACAACGGCTTCTTTCAAGATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGAC 93075
|||| |||| || || | ||| | | || | || | ||||| ||||| |
Sbjct 708110 GATTGCAACCGCATCACGGATGATGGCCGTCACGCGCTCCTTCGAAGGTTTCTGTACCAG 708169
Query 93076 ATAATTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTC 93135
||| || |||| | ||| |||||||| |||| ||||| || || || |||| |||
Sbjct 708170 ATACTTAAACATCAGGCAGGCAAAGTCACAGTGTAGTCCTTCATCACGCGAAATCAGCTC 708229
Query 93136 ATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAA 93195
|| ||| || | || || | |||||| || ||||| ||||| || || | |||||
Sbjct 708230 GTTCGAGAAGGTAAGTCCCGGCATCAGTCCACGCTTCTTCAGCCAGAAAATGGCGGCAAA 708289
Query 93196 ACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATT 93255
||||| || || |||||||| || || ||||| || || | ||| ||| |||| ||
Sbjct 708290 GCTACCGCTGAAGAAGATACCTTCGACAGCAGCAAACGCGACGACACGCTCGCCAAAGTT 708349
Query 93256 TGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAG 93315
||| || || |||||| || | ||||||||||| || ||||| | || || ||
Sbjct 708350 TGCCTTCTTGCTTGAGATCCAGTTCAGTGCCCAATCGGCCTTCTTCTTCACGCACGGCAG 708409
Query 93316 TGTTTCGATAGCGTTAAATAGGTAATCTC 93344
||||| || || || || ||| ||||||
Sbjct 708410 CGTTTCAATTGCATTGAACAGGAAATCTC 708438
Score = 120 bits (132), Expect = 3e-22
Identities = 193/274 (70%), Gaps = 4/274 (1%)
Strand=Plus/Plus
Query 93353 GAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATT 93412
|| || || ||||| || ||||||| ||| || ||||| || || ||||| |||||
Sbjct 708521 GAGTCACGAATGTACGTGTCGATTAGCAGTGAGTACATCTCGCTGTGCACATTTTCCATC 708580
Query 93413 GCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTC 93472
|| ||||| || ||||| ||||| | ||||||||| | ||| || || || || |
Sbjct 708581 GCTATTTGAAAGCCGTAAAAACAGCGAGCTTCCGTTACCTGTACCTCCTGGCTGAAACGT 708640
Query 93473 TCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTT 93532
|| || || ||||| || || || ||||||||||| ||||| || || | || |||
Sbjct 708641 TCGACCAGGTTTTCGTTCACGATGCCATCGGATGCGGCAAAGAAGGCAAGTACGTGCGAG 708700
Query 93533 ATAAAATG--TTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGAT 93590
||||| || ||| | || ||| | | |||||| || | || || || ||||
Sbjct 708701 ATAAAGTGGCGTTCGC-TC-GGTTTCAACGAATCCCAGTCTTTCATGTCCTTGGACAGAT 708758
Query 93591 CGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624
| || ||||| || ||||| ||||| ||||| ||
Sbjct 708759 CCACCTCTTCCACGGTCCAGAACGAAGCTTCCGC 708792
>seq3
Length=602796
Score = 111 bits (122), Expect = 2e-19
Identities = 76/85 (89%), Gaps = 2/85 (2%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322
||||||| |||||||| |||||||||||||||||||||| |||||||||| ||||||
Sbjct 238461 AGTCAGGATGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGTAAGGGAGC 238402
Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347
||||||||||||||||| ||||||
Sbjct 238401 GTGGGTTCGAACCCCACTTCTGACA 238377
Score = 105 bits (116), Expect = 7e-18
Identities = 75/85 (88%), Gaps = 2/85 (2%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322
|||||| |||||||| |||||||||||||||||||||| |||||||||| ||||||
Sbjct 251805 AGTCAGAATGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGTAAGGGAGC 251864
Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347
||||||||||||||||| ||||||
Sbjct 251865 GTGGGTTCGAACCCCACTTCTGACA 251889
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556851110622080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |