Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq628 183 3e-41 seq3 111 2e-19 >seq628 Length=1452984 Score = 183 bits (202), Expect = 3e-41 Identities = 310/449 (69%), Gaps = 0/449 (0%) Strand=Plus/Plus Query 92896 CTTTTCACCGATCAACTCGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACAT 92955 ||| |||| | |||||| ||| || | ||| ||||| || || |||||||| ||||| Sbjct 707990 CTTGTCACAGCCCAACTCCAACAGCAAACGATCGGCTACGAACTCAATGTACTGTGACAT 708049 Query 92956 CAAATCACAATTCATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTC 93015 || ||| || ||||| || || | | || || || || | ||||| || || | ||| Sbjct 708050 CAGATCGCAGTTCATACCGAGCATATCGACTGGCAGTGCTTTCGTCAAAAATTCCTGCTC 708109 Query 93016 GATTACAACGGCTTCTTTCAAGATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGAC 93075 |||| |||| || || | ||| | | || | || | ||||| ||||| | Sbjct 708110 GATTGCAACCGCATCACGGATGATGGCCGTCACGCGCTCCTTCGAAGGTTTCTGTACCAG 708169 Query 93076 ATAATTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTC 93135 ||| || |||| | ||| |||||||| |||| ||||| || || || |||| ||| Sbjct 708170 ATACTTAAACATCAGGCAGGCAAAGTCACAGTGTAGTCCTTCATCACGCGAAATCAGCTC 708229 Query 93136 ATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAA 93195 || ||| || | || || | |||||| || ||||| ||||| || || | ||||| Sbjct 708230 GTTCGAGAAGGTAAGTCCCGGCATCAGTCCACGCTTCTTCAGCCAGAAAATGGCGGCAAA 708289 Query 93196 ACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATT 93255 ||||| || || |||||||| || || ||||| || || | ||| ||| |||| || Sbjct 708290 GCTACCGCTGAAGAAGATACCTTCGACAGCAGCAAACGCGACGACACGCTCGCCAAAGTT 708349 Query 93256 TGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAG 93315 ||| || || |||||| || | ||||||||||| || ||||| | || || || Sbjct 708350 TGCCTTCTTGCTTGAGATCCAGTTCAGTGCCCAATCGGCCTTCTTCTTCACGCACGGCAG 708409 Query 93316 TGTTTCGATAGCGTTAAATAGGTAATCTC 93344 ||||| || || || || ||| |||||| Sbjct 708410 CGTTTCAATTGCATTGAACAGGAAATCTC 708438 Score = 120 bits (132), Expect = 3e-22 Identities = 193/274 (70%), Gaps = 4/274 (1%) Strand=Plus/Plus Query 93353 GAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATT 93412 || || || ||||| || ||||||| ||| || ||||| || || ||||| ||||| Sbjct 708521 GAGTCACGAATGTACGTGTCGATTAGCAGTGAGTACATCTCGCTGTGCACATTTTCCATC 708580 Query 93413 GCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTC 93472 || ||||| || ||||| ||||| | ||||||||| | ||| || || || || | Sbjct 708581 GCTATTTGAAAGCCGTAAAAACAGCGAGCTTCCGTTACCTGTACCTCCTGGCTGAAACGT 708640 Query 93473 TCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTT 93532 || || || ||||| || || || ||||||||||| ||||| || || | || ||| Sbjct 708641 TCGACCAGGTTTTCGTTCACGATGCCATCGGATGCGGCAAAGAAGGCAAGTACGTGCGAG 708700 Query 93533 ATAAAATG--TTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGAT 93590 ||||| || ||| | || ||| | | |||||| || | || || || |||| Sbjct 708701 ATAAAGTGGCGTTCGC-TC-GGTTTCAACGAATCCCAGTCTTTCATGTCCTTGGACAGAT 708758 Query 93591 CGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624 | || ||||| || ||||| ||||| ||||| || Sbjct 708759 CCACCTCTTCCACGGTCCAGAACGAAGCTTCCGC 708792 >seq3 Length=602796 Score = 111 bits (122), Expect = 2e-19 Identities = 76/85 (89%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||| |||||||| |||||||||||||||||||||| |||||||||| |||||| Sbjct 238461 AGTCAGGATGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGTAAGGGAGC 238402 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||| |||||| Sbjct 238401 GTGGGTTCGAACCCCACTTCTGACA 238377 Score = 105 bits (116), Expect = 7e-18 Identities = 75/85 (88%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||| |||||||| |||||||||||||||||||||| |||||||||| |||||| Sbjct 251805 AGTCAGAATGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGTAAGGGAGC 251864 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||| |||||| Sbjct 251865 GTGGGTTCGAACCCCACTTCTGACA 251889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556851110622080