Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq872 277 2e-69 seq672 118 9e-22 seq949 102 7e-17 seq639 86.0 5e-12 >seq872 Length=887634 Score = 277 bits (306), Expect = 2e-69 Identities = 1072/1649 (65%), Gaps = 54/1649 (3%) Strand=Plus/Plus Query 128779 TTGTCCACGGTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATAGTACATGCCT 128838 |||||||| ||||||| || || | | ||||| |||||||||| ||||||||||| Sbjct 220940 TTGTCCACCGTAAATTGGATGGCATTTACGGCCGGTTTGGTGCGCAGGTAGTACATGCCC 220999 Query 128839 GTTTTCAAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAACAATGCGTAGGTGGGT 128898 || || | || | ||||| | || | || |||| |||| | | ||| | || Sbjct 221000 GTCTTTAGTCCCATCTTCCACGCGTAGAAATGGATCGACGTCAGCTTGCCATAGTTCGGC 221059 Query 128899 TGACTCaaaaaaaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGCAGCC 128958 | || || ||||||||||| ||||| ||||| | || |||||||| ||| Sbjct 221060 TCGGCCACGTGTATGTTAAATGATTGTGACTGATCGATAAACGCTCCCCGATCGGCCGCC 221119 Query 128959 ATACCAATCAAATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTCACGTGT 129018 || || | ||||||| || ||||| ||||| ||||| || || | | | Sbjct 221120 ATTTTGATGGATGTTTTCACCGAGATCTCCCATACCGTCTTGTACAGGTCGCGGATTTCC 221179 Query 129019 TTTGGTATTTCTTCAATGTTCTGCA-CGCTGCCGTTGTTTGCAATAATTTTGTTTCGCAT 129077 ||||||||| ||||||||| || | || | |||||||| | | || ||||| ||| Sbjct 221180 TTTGGTATTGATTCAATGTTTTGAATCGAT-CCGTTGTTGGACAAGATGTTGTTCTTCAT 221238 Query 129078 CTGTTCGTTGTACAAATTCAGTTTGATCAAATCGTCGGTCAAGTATTTGTTTATTACTTG 129137 | | ||||| || | | ||| | || | | ||| | || || Sbjct 221239 GTCAAGATCCCACAAACCCATCGCTGTTAGATCTTGCAGCAGATGATGGTTCACCACCTG 221298 Query 129138 AAAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAACGATTC 129197 || || |||| | || || || ||||| ||| ||| ||||||| || || || Sbjct 221299 GAACTCGCCCGATAGCACACGTCGGTTGTAAACGTTCGACGTGTACGGCTCGAAGGACTC 221358 Query 129198 ATTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCACGCAA-AGCGAGT 129256 ||||||||| |||||||| ||||| | || || ||||| |||| ||| ||||||| Sbjct 221359 ATTGTTGCCCAATATTTGTGCCGTCGAAGCTGTCGGCATCGGTGCCA-GCAGTAGCGAGT 221417 Query 129257 TTCGCAAACCGTGCTGTTTAATGTCtttttttAATTGTGTCCAGTCCCACATCGAT--GT 129314 | || | |||||||| | ||| | | || || | |||||||| ||||| ||| || Sbjct 221418 TACGAATACCGTGCTTTGCAATCTTCTCCTTCAACTCTGTCCAGTTCCACA--GATCCGT 221475 Query 129315 GGGTGTGTGATTCCACAAGTCGTATTGCAATATACCCAAACTGGCGGGACTGGAAAAGTA 129374 ||| | ||||||| ||||| || | | |||| || | |||| || Sbjct 221476 CGGTTCTTTGTTCCACATTTCGTACTGTAGGACACCCTTGCTCACTGGACAACCTTCATA 221535 Query 129375 GGAATCGTGCACGCCGTAAGCTTTTGCCAATTCGCAACTCGCTTCCAATGCGCCAAAATA 129434 | |||| |||| | ||||||||||| || ||||||| ||| ||| | || Sbjct 221536 CGTCTCGTATGGACCGTCCCGTGCAGCCAATTCGCAGCTTGCTTCCAGTGCTCCATAGTA 221595 Query 129435 AATTGTTTCGGCAAT-TTTGGTG-TTCAACACTTTGGCCTGGTCGCTTTCGTACGGCATA 129492 || ||||| ||| |||| || |||| | || ||||| ||||||||||| || ||| Sbjct 221596 GATGGTTTCA--AATATTTGTTGATTCAGCTTTTGGGCCTCTTCGCTTTCGTATGG-ATA 221652 Query 129493 -CGCA---ACATGGCAAATGTGTCGGCCAAACCTTGAATACCCACACCGATGGGTCGATG 129548 |||| | ||| || | ||||||| || || | ||| | ||||||||| | || Sbjct 221653 GCGCATTAAAATG---AACGCATCGGCCATGCCCTGCACACCGATACCGATGGGCCTGTG 221709 Query 129549 TTTTCTATTGGATTTTTGTGCCGACAACAAGGGATAGTAGTTGATGTCTATAATTTTGTT 129608 | ||||| | ||| | || ||||||||||| ||||| || |||||||| Sbjct 221710 GCGCATGTTGGAACGCTTCGCCTCCGGCACCGGATAGTAGTTTATGTCGATGATTTTGTT 221769 Query 129609 TAAATT-CTTGACCACAATTTTCGTTACGTATTTTAACATTTCAAAATTGTACTCGCCTA 129667 | ||| | || || || || | || | || | | || | |||| |||| |||| Sbjct 221770 CAGATTGCGTGTT-ACTATCTTGGCGACATCCTTCAGCTTTACGAAATCGTACGT-CCTA 221827 Query 129668 CATCG-ATGT--CGA-CAAATTGATTGACACAAATCGAGGCCAAATTGCAGACGGCACTT 129723 ||| || | ||| || || | || | ||||||||| |||||| || ||| || Sbjct 221828 --TCGGATTTTACGAACATGTTCAGTGCGA----TCGAGGCCAGATTGCAAACCGCAATT 221881 Query 129724 TCGTTTTTGTCACTGTACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCCC 129783 || | || |||||| ||||| || | |||||| ||| | ||||||||||| Sbjct 221882 TCATCCTTCGACGAGTACTCCACAATCTCAGTGCACAAGTTAGAACACTTAATGGTGCCA 221941 Query 129784 AAATGCTTTTGATTACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCC 129843 | | || || || ||||| |||||| ||||| ||||||| ||| ||||| |||| Sbjct 221942 ATGTTCTGCTGGTTGCTTTTGCGGTTGCATGCATCCTTGTACAGCATATACGGTACGCCC 222001 Query 129844 GTTTCGACTTGCGTTTCGACAATGGTCCTGAAC---AAGTCTCGAGCCTTGATCTGTCTT 129900 ||||| || |||| ||| |||| || |||| || || | ||||| | ||| | Sbjct 222002 GTTTCCACCTGCGATTC---AATGATCGCGAACCACAAATCCTGTGCCTTCACCTGGCGA 222058 Query 129901 ACAAATTTGCCACATTTCTCGTATGCCACA-TACAGTTGTTCAAA-TTCTGAGCCGTGTA 129958 | ||| || ||||||||| |||| |||||| || || || | | || | Sbjct 222059 ATAAAACGACCCTCTTTCTCGTA-GCCAGTGTACAGTGCCTCGAACTTTTCACCCCAGC- 222116 Query 129959 CGGTGTC-GAGCAACGGCGAT--TCACGCGGACACATCAAACTCCACATTCCATCCGCTT 130015 | || || ||| | || || | || ||||| | |||||||||| | | ||| | Sbjct 222117 ---TATCAGACAAACCGGGACAATCGTGAGGGCACATTAGACTCCACATTTCGTTCGCCT 222173 Query 130016 CGACTCGTTTCATAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTCGCGCTTTTC 130075 | || || | ||| |||| ||| || | ||||| |||||| |||| || || || Sbjct 222174 CCACCCGCTCCATGAACAGATCCGGAATCCACAAGGCGTAAAACATGTCGCGTGCACGCA 222233 Query 130076 TATCCTCGGCACCCATGTTACGTTTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCCACG 130135 ||||| || |||| ||||| || || || ||| | | || ||||||||| Sbjct 222234 CCTCCTCTTTGCCGGTGTTTTTCTTCAGATCCAGAAACTCGAACACATCACCGTGCCACG 222293 Query 130136 GTTCAACATAAATTGCCATTGCGCCCTTCCG---TTTGCCCCCTTGGTCAACGTGGCGCA 130192 |||| | || || || | || ||| || ||||| || || || |||| || Sbjct 222294 GTTCGAGGTAGATGGCAAAAGCTCCCGGGCGCTTGTTGCCACCCTGATCCACGTATCGGG 222353 Query 130193 CGGCATTGTTGTAGACTCGCAACATTGCCTCCAATCCGTTGGCCGTGCCGTTTGTGCTCT 130252 | | ||||||||| || |||| ||||| | |||| ||||| | | || || |||| | Sbjct 222354 CCGTATTGTTGTACACGCGCAGCATTGGCACCAACCCGTTTGAAATTCCATTCGTGCCCG 222413 Query 130253 CAATGAAACTGCCACGAGCCCGAACGTTATGAACGCTTAGACCTATGCCGCCGCCAAATT 130312 ||| | | || || |||| || ||| | || || || ||||| || ||| Sbjct 222414 AGATGTACGTACCTTTCGCGCGAATACAGTGCACGTTCAGCCCAATTCCGCCAGCAGATT 222473 Query 130313 TTGATATCAACGCGCAATCGCGT-AGCGTTTCATAAATGCCAACGATACTGTCTTCTTTA 130371 |||| |||| || || | || | ||||| || || || || | || ||||| || Sbjct 222474 TTGAAATCAGTGCACACT-GCTTCAGCGTATCGTAGATACCTTCAATGCTGTCGTCCGAC 222532 Query 130372 ATGTTTAGGAGGAAACACGAGGCCAATTG 130400 ||| | || | |||||| || | ||| || Sbjct 222533 ATGGTGAGCAAGAAACAGGACGACAACTG 222561 >seq672 Length=1102954 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || ||||| | ||||| || || |||| ||||| || || | | Sbjct 391803 ATGCAGATTTTCGTGAAAACACTCACCGGCAAGACCATCACACTTGAGGTCGAGCCTTCG 391744 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | || ||| ||||| || ||||| || ||||| || ||||| Sbjct 391743 GACACGATCGAAAATGTGAAGGCAAAGATTCAGGATAAGGAAGGAATTCCCCCAGATCAG 391684 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || ||||| || ||| | |||||| |||||| | || || |||||| Sbjct 391683 CAGCGTCTCATCTTCGCCGGTAAGCAGCTGGAGGATGGCCGCACTCTGTCGGACTACAAC 391624 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || ||||| ||| | ||| | || ||||| | || || ||| Sbjct 391623 ATTCAGAAGGAATCTACCCTTCATCTGGTGCTGCGACTTCGTGGTGGT 391576 >seq949 Length=1771395 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| ||||| ||||| ||||||||| |||| ||||| || | | | Sbjct 449177 ATGCAGATCTTTGTAAAAACATTAACGGGTAAAACGATCACCCTTGATGTTGTTGCTTCG 449118 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || || || |||||| | ||||| || ||||||||| |||| || || Sbjct 449117 GAAACGGTTCTGGACATCAAAAATAAAATCTTGGAACGTGAGGGTATTGCACCGGACCAG 449058 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| |||| |||||||||||||||||||| || || | | || |||||||| Sbjct 449057 CAGCGTATTATCTTTGCCGGCAAACAGTTAGACGAGGGTCGAATTATATCTGATTACAAT 448998 Query 22399 ATTCAAAAAGAATCCACCATACAT 22422 || || | | ||| || || ||| Sbjct 448997 ATCCAGCATGGATCGACGATGCAT 448974 >seq639 Length=1041161 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 108830 CAATGTTTCCAAGATCGCCAACGTGCCGGTCAAGATTGTTTGGTCCGCCGTGATTTTTGT 108889 |||||||||| | || ||| | || || || | | | ||| | ||||| ||||| Sbjct 711657 CAATGTTTCCCATGTCACCAGCATGGCGCTCTTCAGCGGTCGGTGCTCCGTGTGTTTTGC 711716 Query 108890 TGTACGGATTGTAGTGTTCGCCCGCCGATGTGCAACCGTTGCTCATGTCGCCGTATTCAT 108949 || ||||||| |||| |||||| || |||||||||| | |||||||| |||||| Sbjct 711717 CGTGCGGATTGAAGTGCGCGCCCGTAGACATGCAACCGTTAGTGTTGTCGCCGAATTCAT 711776 Query 108950 GAATGTGAAATCCAT 108964 ||||||| ||||||| Sbjct 711777 GAATGTGGAATCCAT 711791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419720879314480