Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28]
1,392 sequences; 225,223,604 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq1172 93.3 9e-14
seq916 93.3 9e-14
seq583 93.3 9e-14
seq533 93.3 9e-14
seq661 91.5 3e-13
seq496 91.5 3e-13
seq473 91.5 3e-13
seq1116 89.7 1e-12
seq572 89.7 1e-12
seq571 89.7 1e-12
seq456 89.7 1e-12
seq402 86.0 1e-11
seq574 84.2 4e-11
>seq1172
Length=869145
Score = 93.3 bits (102), Expect = 9e-14
Identities = 66/76 (87%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 142500 GATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTC 142559
|| ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 707766 GACAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTC 707707
Query 142560 GAGCCCCACATCGGGC 142575
||||||||| | ||||
Sbjct 707706 GAGCCCCACGTTGGGC 707691
Score = 93.3 bits (102), Expect = 9e-14
Identities = 66/76 (87%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 142500 GATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTC 142559
|| ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 709258 GACAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTC 709317
Query 142560 GAGCCCCACATCGGGC 142575
||||||||| | ||||
Sbjct 709318 GAGCCCCACGTTGGGC 709333
Score = 93.3 bits (102), Expect = 9e-14
Identities = 65/74 (88%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561
|||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 780064 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 780123
Query 142562 GCCCCACATCGGGC 142575
||||||| | ||||
Sbjct 780124 GCCCCACGTTGGGC 780137
>seq916
Length=882720
Score = 93.3 bits (102), Expect = 9e-14
Identities = 66/76 (87%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 437359 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 437418
Query 142564 CCCACATCGGGCAGAA 142579
||||| | |||| |||
Sbjct 437419 CCCACGTTGGGCGGAA 437434
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 433794 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 433735
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 433734 CCCACGTTGGGC 433723
>seq583
Length=1311425
Score = 93.3 bits (102), Expect = 9e-14
Identities = 66/76 (87%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 142500 GATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTC 142559
|| ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 740550 GACAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTC 740491
Query 142560 GAGCCCCACATCGGGC 142575
||||||||| | ||||
Sbjct 740490 GAGCCCCACGTTGGGC 740475
>seq533
Length=343795
Score = 93.3 bits (102), Expect = 9e-14
Identities = 65/74 (88%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561
|||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 195854 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 195913
Query 142562 GCCCCACATCGGGC 142575
||||||| | ||||
Sbjct 195914 GCCCCACGTTGGGC 195927
>seq661
Length=976588
Score = 91.5 bits (100), Expect = 3e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 369366 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 369307
Query 142563 CCCCACATCGGGC 142575
|||||| | ||||
Sbjct 369306 CCCCACGTTGGGC 369294
>seq496
Length=361004
Score = 91.5 bits (100), Expect = 3e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 313358 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 313299
Query 142563 CCCCACATCGGGC 142575
|||||| | ||||
Sbjct 313298 CCCCACGTTGGGC 313286
>seq473
Length=518197
Score = 91.5 bits (100), Expect = 3e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 473478 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 473537
Query 142563 CCCCACATCGGGC 142575
|||||| | ||||
Sbjct 473538 CCCCACGTTGGGC 473550
>seq1116
Length=1014753
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 617975 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 618034
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 618035 CCCACGTTGGGC 618046
>seq572
Length=1431544
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 146264 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 146205
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 146204 CCCACGTTGGGC 146193
>seq571
Length=259671
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 130722 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 130663
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 130662 CCCACGTTGGGC 130651
>seq456
Length=439401
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 39836 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 39777
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 39776 CCCACGTTGGGC 39765
>seq402
Length=608830
Score = 86.0 bits (94), Expect = 1e-11
Identities = 64/75 (85%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 142049 GCATGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTC 142108
||||||| || ||||||| ||| ||||||||||||||||||||||||||| | ||||||
Sbjct 30403 GCATGTCCCTTTGGCGCAGCGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGTGGGTTC 30344
Query 142109 GACCCCCGCCAGAGA 142123
|| |||| | || ||
Sbjct 30343 GATCCCCACAAGGGA 30329
>seq574
Length=269012
Score = 84.2 bits (92), Expect = 4e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 218741 TGGCACAGGACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTG 218800
|||||||| |||| || || || || ||||| || |||| || |||||||||||
Sbjct 38071 TGGCACAGAACTACGTCGGAAGCAATAACATCAATCTGCTCTATCCTGGCGGTCAGTTTG 38012
Query 218801 GTTCTCGTCTATTGGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAAGTTGT 218860
|| | || | ||| ||||||||||| ||| ||||||||||||| || | |||||
Sbjct 38011 GTACGCGCTTGACGGGCGGAAAGGATAGCGCTAGCCCCAGGTATATCTTCACGATGTTGT 37952
Query 218861 CGCCCGTGACGCGC 218874
|| | ||||||||
Sbjct 37951 CGTCGCTGACGCGC 37938
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027818468530672
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |