Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1172 93.3 9e-14 seq916 93.3 9e-14 seq583 93.3 9e-14 seq533 93.3 9e-14 seq661 91.5 3e-13 seq496 91.5 3e-13 seq473 91.5 3e-13 seq1116 89.7 1e-12 seq572 89.7 1e-12 seq571 89.7 1e-12 seq456 89.7 1e-12 seq402 86.0 1e-11 seq574 84.2 4e-11 >seq1172 Length=869145 Score = 93.3 bits (102), Expect = 9e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 142500 GATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTC 142559 || ||||||| |||||||||||||||||| ||||||||||||| |||||||||||| Sbjct 707766 GACAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTC 707707 Query 142560 GAGCCCCACATCGGGC 142575 ||||||||| | |||| Sbjct 707706 GAGCCCCACGTTGGGC 707691 Score = 93.3 bits (102), Expect = 9e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 142500 GATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTC 142559 || ||||||| |||||||||||||||||| ||||||||||||| |||||||||||| Sbjct 709258 GACAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTC 709317 Query 142560 GAGCCCCACATCGGGC 142575 ||||||||| | |||| Sbjct 709318 GAGCCCCACGTTGGGC 709333 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 780064 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 780123 Query 142562 GCCCCACATCGGGC 142575 ||||||| | |||| Sbjct 780124 GCCCCACGTTGGGC 780137 >seq916 Length=882720 Score = 93.3 bits (102), Expect = 9e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 437359 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 437418 Query 142564 CCCACATCGGGCAGAA 142579 ||||| | |||| ||| Sbjct 437419 CCCACGTTGGGCGGAA 437434 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 433794 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 433735 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 433734 CCCACGTTGGGC 433723 >seq583 Length=1311425 Score = 93.3 bits (102), Expect = 9e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 142500 GATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTC 142559 || ||||||| |||||||||||||||||| ||||||||||||| |||||||||||| Sbjct 740550 GACAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTC 740491 Query 142560 GAGCCCCACATCGGGC 142575 ||||||||| | |||| Sbjct 740490 GAGCCCCACGTTGGGC 740475 >seq533 Length=343795 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 195854 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 195913 Query 142562 GCCCCACATCGGGC 142575 ||||||| | |||| Sbjct 195914 GCCCCACGTTGGGC 195927 >seq661 Length=976588 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 369366 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 369307 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 369306 CCCCACGTTGGGC 369294 >seq496 Length=361004 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 313358 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 313299 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 313298 CCCCACGTTGGGC 313286 >seq473 Length=518197 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 473478 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 473537 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 473538 CCCCACGTTGGGC 473550 >seq1116 Length=1014753 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 617975 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 618034 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 618035 CCCACGTTGGGC 618046 >seq572 Length=1431544 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 146264 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 146205 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 146204 CCCACGTTGGGC 146193 >seq571 Length=259671 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 130722 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 130663 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 130662 CCCACGTTGGGC 130651 >seq456 Length=439401 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 39836 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 39777 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 39776 CCCACGTTGGGC 39765 >seq402 Length=608830 Score = 86.0 bits (94), Expect = 1e-11 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142049 GCATGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTC 142108 ||||||| || ||||||| ||| ||||||||||||||||||||||||||| | |||||| Sbjct 30403 GCATGTCCCTTTGGCGCAGCGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGTGGGTTC 30344 Query 142109 GACCCCCGCCAGAGA 142123 || |||| | || || Sbjct 30343 GATCCCCACAAGGGA 30329 >seq574 Length=269012 Score = 84.2 bits (92), Expect = 4e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 218741 TGGCACAGGACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTG 218800 |||||||| |||| || || || || ||||| || |||| || ||||||||||| Sbjct 38071 TGGCACAGAACTACGTCGGAAGCAATAACATCAATCTGCTCTATCCTGGCGGTCAGTTTG 38012 Query 218801 GTTCTCGTCTATTGGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAAGTTGT 218860 || | || | ||| ||||||||||| ||| ||||||||||||| || | ||||| Sbjct 38011 GTACGCGCTTGACGGGCGGAAAGGATAGCGCTAGCCCCAGGTATATCTTCACGATGTTGT 37952 Query 218861 CGCCCGTGACGCGC 218874 || | |||||||| Sbjct 37951 CGTCGCTGACGCGC 37938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027818468530672