Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1360 179 7e-40 seq949 141 2e-28 seq672 141 2e-28 seq575 140 6e-28 >seq1360 Length=640366 Score = 179 bits (198), Expect = 7e-40 Identities = 375/554 (68%), Gaps = 6/554 (1%) Strand=Plus/Minus Query 268211 CCAGTTGCAATCACAAAGTCCTCTGGCTCAGGAGACTGGAGCATTTTCCACATTGCTTCG 268270 || || ||||| |||||||| || || | ||| | ||| |||||| |||||| Sbjct 380913 CCCGTCGCAATTACAAAGTCTTCCGGTTTGTCCTGCTGCATCATAAGCCACATCGCTTCG 380854 Query 268271 ACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGCGTCCATGTTCCCGAGGAACAGGCAT 268330 || || || || |||||||| || || || | ||| | || || || ||| | Sbjct 380853 ACGTAATCTTTTGCGTGGCCCCAGTCACGTTTCGAGTCGAGATTACCCAGCTCCAGATAC 380794 Query 268331 TTCTGCTTGCCGAGCTTCACGCGTGCAAGACCGCGAGTGATTTTTCGGGTCACGAACGTC 268390 | |||| ||||||| | ||| | ||| || ||||| || || || || | Sbjct 380793 TCTTGCTGGCCGAGCGAAATTTTTGCCACCGAGCGGGTAATTTTGCGCGTTACAAAATTT 380734 Query 268391 TCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGGATGCCGTTGCACGCGAACATGCCATAT 268450 || || || | || ||||||||| ||||| || |||||||| ||||||||| | || Sbjct 380733 TCTCCCCGGCGCGGTGACTCGTGGTTAAAGAGAATCCCGTTGCAGGCGAACATGTCGTAC 380674 Query 268451 GCCTCACGGTAGTTCACGACCGTCCAGTATGCAAACATCTTTGCAACTGCGTACGGAGAA 268510 || || || ||||| | || |||||||| | ||||||| ||| |||||||| || Sbjct 380673 GCTTCGCGATAGTTTATCACAATCCAGTATCCGTACATCTTCGCACAAGCGTACGGTGAG 380614 Query 268511 CGTGGATGGAAGGGCGTCGTGATCTTTTGAGGGATTTCTCGG--ACTTTGCCAAAGAGCT 268568 ||||||| ||| || ||| | || || || | |||||| || || || | |||| Sbjct 380613 CGTGGATAGAACGGAGTCTTTTCGTTCTGTGG--TGTCTCGGCCACCTTTCCGTACAGCT 380556 Query 268569 CGGAGGTCGATGCTTGGTAGAACTTTGTTGTTTTTTCGAGACCGCAGATTCGGATTGCCT 268628 | || || || ||||||||||| || ||||| | ||| | | ||||| || | Sbjct 380555 CCGACGTGGAAGCTTGGTAGAAGCGGACAGTCTTTTCCTGCCCGACGGTACGGATGGCAT 380496 Query 268629 CGAGCAAACGAAGAGTTCCCATGCCATCCACGTCCGCTGTATACTCCGGCATCTCGAATG 268688 | |||||||| || || || | |||| || ||||| ||||| || || ||||| | Sbjct 380495 CTAGCAAACGTAGTGTACCGACAGCATCTACCTCCGCCGTATATTCGCTCAAATCGAACG 380436 Query 268689 ACACCTGGACATGGCTCTGGGCGCCCAGGTTATAAACCTCATCCGGTTTGACCTGCTGC- 268747 | | || ||| ||||| |||||| |||| || || | ||| ||| || || ||| Sbjct 380435 ATATCTTGACGTGGCTTTGGGCGGCCAGATTGTAGATTTCAGACGGACGCACTTG-TGCA 380377 Query 268748 ACGATCTTCACGAG 268761 | ||||||||| || Sbjct 380376 ATGATCTTCACTAG 380363 >seq949 Length=1771395 Score = 141 bits (156), Expect = 2e-28 Identities = 171/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 68230 AATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAAT 68289 ||| ||| || || || || | |||| || || || || || || || || || || | Sbjct 446665 AATATCCACCACGTAGACGAAGGACCAGATGGAGAGTCGATTCCTTCTGAATATTGTAGT 446724 Query 68290 CGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGG 68349 | || || || | |||||||| |||||||| || || || || || | || || || | Sbjct 446725 CCGACAGCGTACGGCCATCTTCCAACTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTG 446784 Query 68350 GTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATT 68409 |||| || || ||||| || |||||||| ||||| || ||||||||| || | || | Sbjct 446785 GTGGGATTCCCTCCTTATCCTGAATCTTGGCCTTAACATTCTCGATGGTATCGGATGGCT 446844 Query 68410 CTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 | || |||| |||||| || ||||| || || ||||||||||| ||||||||| Sbjct 446845 CAACCTCCAGGGTGATCGTCTTTCCAGTTAGAGTCTTGACGAAGATCTGCATT 446897 >seq672 Length=1102954 Score = 141 bits (156), Expect = 2e-28 Identities = 173/236 (73%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 68232 TTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCG 68291 || || || ||||| |||| |||| || || || || || || || ||||| || || Sbjct 391574 TTACCACCACGAAGTCGCAGCACCAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCC 391633 Query 68292 GAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGT 68351 || || || | ||||| || | |||||| |||||||| ||||| | || || || || Sbjct 391634 GACAGAGTGCGGCCATCCTCCAGCTGCTTACCGGCGAAGATGAGACGCTGCTGATCTGGG 391693 Query 68352 GGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCT 68411 ||||| |||||||| || |||||||||||||| || ||||| ||||| | | || Sbjct 391694 GGAATTCCTTCCTTATCCTGAATCTTTGCCTTCACATTTTCGATCGTGTCCGAAGGCTCG 391753 Query 68412 ACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATGCT 68467 || || | |||||||| || || ||||| || || ||||| |||||||| || || Sbjct 391754 ACCTCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCATGATTCT 391809 >seq575 Length=281738 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| ||||| | |||| || || || ||||| || || |||||||| || || Sbjct 24172 CCACCGCGCAGGCGAAGCACCAGATGAAGGGTCGACTCCTTCTGAATGTTATAGTCAGAC 24113 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 ||||| | ||||| || | |||||| |||||||| || | | || || || || || Sbjct 24112 AGTGTGCGTCCATCCTCCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCCGGCGGG 24053 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||| || || ||||| ||||| || |||||| || || | | || || Sbjct 24052 ATGCCCTCCTTATCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACC 23993 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||| || || || ||||||||||| |||||||| |||||||| Sbjct 23992 TCAAGGGTAATAGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 23946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921606363770240