Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28]
1,392 sequences; 225,223,604 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq1360 179 7e-40
seq949 141 2e-28
seq672 141 2e-28
seq575 140 6e-28
>seq1360
Length=640366
Score = 179 bits (198), Expect = 7e-40
Identities = 375/554 (68%), Gaps = 6/554 (1%)
Strand=Plus/Minus
Query 268211 CCAGTTGCAATCACAAAGTCCTCTGGCTCAGGAGACTGGAGCATTTTCCACATTGCTTCG 268270
|| || ||||| |||||||| || || | ||| | ||| |||||| ||||||
Sbjct 380913 CCCGTCGCAATTACAAAGTCTTCCGGTTTGTCCTGCTGCATCATAAGCCACATCGCTTCG 380854
Query 268271 ACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGCGTCCATGTTCCCGAGGAACAGGCAT 268330
|| || || || |||||||| || || || | ||| | || || || ||| |
Sbjct 380853 ACGTAATCTTTTGCGTGGCCCCAGTCACGTTTCGAGTCGAGATTACCCAGCTCCAGATAC 380794
Query 268331 TTCTGCTTGCCGAGCTTCACGCGTGCAAGACCGCGAGTGATTTTTCGGGTCACGAACGTC 268390
| |||| ||||||| | ||| | ||| || ||||| || || || || |
Sbjct 380793 TCTTGCTGGCCGAGCGAAATTTTTGCCACCGAGCGGGTAATTTTGCGCGTTACAAAATTT 380734
Query 268391 TCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGGATGCCGTTGCACGCGAACATGCCATAT 268450
|| || || | || ||||||||| ||||| || |||||||| ||||||||| | ||
Sbjct 380733 TCTCCCCGGCGCGGTGACTCGTGGTTAAAGAGAATCCCGTTGCAGGCGAACATGTCGTAC 380674
Query 268451 GCCTCACGGTAGTTCACGACCGTCCAGTATGCAAACATCTTTGCAACTGCGTACGGAGAA 268510
|| || || ||||| | || |||||||| | ||||||| ||| |||||||| ||
Sbjct 380673 GCTTCGCGATAGTTTATCACAATCCAGTATCCGTACATCTTCGCACAAGCGTACGGTGAG 380614
Query 268511 CGTGGATGGAAGGGCGTCGTGATCTTTTGAGGGATTTCTCGG--ACTTTGCCAAAGAGCT 268568
||||||| ||| || ||| | || || || | |||||| || || || | ||||
Sbjct 380613 CGTGGATAGAACGGAGTCTTTTCGTTCTGTGG--TGTCTCGGCCACCTTTCCGTACAGCT 380556
Query 268569 CGGAGGTCGATGCTTGGTAGAACTTTGTTGTTTTTTCGAGACCGCAGATTCGGATTGCCT 268628
| || || || ||||||||||| || ||||| | ||| | | ||||| || |
Sbjct 380555 CCGACGTGGAAGCTTGGTAGAAGCGGACAGTCTTTTCCTGCCCGACGGTACGGATGGCAT 380496
Query 268629 CGAGCAAACGAAGAGTTCCCATGCCATCCACGTCCGCTGTATACTCCGGCATCTCGAATG 268688
| |||||||| || || || | |||| || ||||| ||||| || || ||||| |
Sbjct 380495 CTAGCAAACGTAGTGTACCGACAGCATCTACCTCCGCCGTATATTCGCTCAAATCGAACG 380436
Query 268689 ACACCTGGACATGGCTCTGGGCGCCCAGGTTATAAACCTCATCCGGTTTGACCTGCTGC- 268747
| | || ||| ||||| |||||| |||| || || | ||| ||| || || |||
Sbjct 380435 ATATCTTGACGTGGCTTTGGGCGGCCAGATTGTAGATTTCAGACGGACGCACTTG-TGCA 380377
Query 268748 ACGATCTTCACGAG 268761
| ||||||||| ||
Sbjct 380376 ATGATCTTCACTAG 380363
>seq949
Length=1771395
Score = 141 bits (156), Expect = 2e-28
Identities = 171/233 (73%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 68230 AATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAAT 68289
||| ||| || || || || | |||| || || || || || || || || || || |
Sbjct 446665 AATATCCACCACGTAGACGAAGGACCAGATGGAGAGTCGATTCCTTCTGAATATTGTAGT 446724
Query 68290 CGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGG 68349
| || || || | |||||||| |||||||| || || || || || | || || || |
Sbjct 446725 CCGACAGCGTACGGCCATCTTCCAACTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTG 446784
Query 68350 GTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATT 68409
|||| || || ||||| || |||||||| ||||| || ||||||||| || | || |
Sbjct 446785 GTGGGATTCCCTCCTTATCCTGAATCTTGGCCTTAACATTCTCGATGGTATCGGATGGCT 446844
Query 68410 CTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462
| || |||| |||||| || ||||| || || ||||||||||| |||||||||
Sbjct 446845 CAACCTCCAGGGTGATCGTCTTTCCAGTTAGAGTCTTGACGAAGATCTGCATT 446897
>seq672
Length=1102954
Score = 141 bits (156), Expect = 2e-28
Identities = 173/236 (73%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 68232 TTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCG 68291
|| || || ||||| |||| |||| || || || || || || || ||||| || ||
Sbjct 391574 TTACCACCACGAAGTCGCAGCACCAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCC 391633
Query 68292 GAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGT 68351
|| || || | ||||| || | |||||| |||||||| ||||| | || || || ||
Sbjct 391634 GACAGAGTGCGGCCATCCTCCAGCTGCTTACCGGCGAAGATGAGACGCTGCTGATCTGGG 391693
Query 68352 GGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCT 68411
||||| |||||||| || |||||||||||||| || ||||| ||||| | | ||
Sbjct 391694 GGAATTCCTTCCTTATCCTGAATCTTTGCCTTCACATTTTCGATCGTGTCCGAAGGCTCG 391753
Query 68412 ACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATGCT 68467
|| || | |||||||| || || ||||| || || ||||| |||||||| || ||
Sbjct 391754 ACCTCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCATGATTCT 391809
>seq575
Length=281738
Score = 140 bits (154), Expect = 6e-28
Identities = 167/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| ||||| ||||| | |||| || || || ||||| || || |||||||| || ||
Sbjct 24172 CCACCGCGCAGGCGAAGCACCAGATGAAGGGTCGACTCCTTCTGAATGTTATAGTCAGAC 24113
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
||||| | ||||| || | |||||| |||||||| || | | || || || || ||
Sbjct 24112 AGTGTGCGTCCATCCTCCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCCGGCGGG 24053
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| ||||| || || ||||| ||||| || |||||| || || | | || ||
Sbjct 24052 ATGCCCTCCTTATCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACC 23993
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | ||| || || || ||||||||||| |||||||| ||||||||
Sbjct 23992 TCAAGGGTAATAGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 23946
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921606363770240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |