Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq872 251 1e-61 seq628 172 1e-37 >seq872 Length=887634 Score = 251 bits (278), Expect = 1e-61 Identities = 980/1508 (65%), Gaps = 72/1508 (5%) Strand=Plus/Plus Query 243758 ACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTGAGTCCACTGGACCAGGCGTGG 243817 ||||| | ||||| | ||||||||||||||| ||||| ||||| | ||| |||| | Sbjct 220967 ACGGCCGGTTTGGTGCGCAGGTAGTACATGCCCGTCTTTAGTCCCATCTTCCACGCGTAG 221026 Query 243818 AGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGGTCGTCCTCGCACAGAAAGAGG 243877 | || || | ||||||||| ||| || || || ||| || || | | Sbjct 221027 AAATGGATCGACGTCAGCTTGC-CAT----AG-TTCGGCTCGGCCACGTGTAT------G 221074 Query 243878 TTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGGCCATGGTGATG-AGGTC 243936 || | || || ||| |||| || | |||| || || ||||| ||||| | || Sbjct 221075 TTAAATGATTGTGACTGATCGATAAACGCTCCCCGATCGGCCGCCATTTTGATGGATGTT 221134 Query 243937 CTT-CTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCCTT 243995 | | ||||| || ||||| ||||||||| | | || | || || | || Sbjct 221135 TTCACCGAGATCTCCCATAC--CGTCTTGTACAGGTCGCGGATTTCCTTTGGTATTGATT 221192 Query 243996 CGATGTTCTGCACCGAGCCCTTGT-GGACGATGAGCTGGGTGCGCATGTTATCGTTCCAC 244054 | ||||| || | ||| || |||| |||| | || | | | ||||| | | |||| Sbjct 221193 CAATGTTTTGAATCGATCCGTTGTTGGACAA-GATGTTGTTCTTCATGTCAAGATCCCAC 221251 Query 244055 AGGCCCAAGCGCTCC-AGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGA 244113 | |||| |||| || | | | ||| || |||||||||||| ||||| ||||| Sbjct 221252 AAACCCAT-CGCTGTTAGATCTTGCAGCAGATGATGGTTCACCACCTGGAACTCGCCCGA 221310 Query 244114 CAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAG 244173 ||||| || || | ||| | ||| || |||||||| | ||| ||||||||| Sbjct 221311 TAGCACACGTCGGTTGTAAACGTTCGACGTGTACGGCTCGAAGGACTCATTGTTGCCCAA 221370 Query 244174 TATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTG 244233 ||| || ||||| || |||||||| || | || ||| || ||| | | ||||| Sbjct 221371 TATTTGTGCCGTCGAAGCTGTCGGCATCGGTGCCAGCAGTAGCGAGTTACGAATACCGTG 221430 Query 244234 CCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCC-TCGCGTT 244292 | | ||| | ||| ||| ||| | || | | | | || ||| ||| ||| Sbjct 221431 CTT-----TGC--AATCTT--CTCCTTCAACTCTGTCCAGTTCCACAGATCCGTCG-GTT 221480 Query 244293 TGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCG 244352 | |||||| || |||| || | |||||||| || || | || || || ||| Sbjct 221481 CTTTGTTCCACATTTCGTACTGTAGGACACCCTTGCTCACTGGACAACCTTCATACGTCT 221540 Query 244353 GGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGG 244412 ||| |||||||| || |||| | ||||| | || || || | |||||||||| Sbjct 221541 CGTATGGACCGTCCCGTGCAGCCAATTCGCAGCTTGCTTCCAGTGCTCCATAGTAGATGG 221600 Query 244413 TCTCGAAGATCATCTTG-TTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATC 244471 | || || || | ||| |||| | |||||| ||| | | || || ||| Sbjct 221601 TTTCAAATAT-TTGTTGATTCAGCTTTTGGGCCTCTTCGCTTTCGTATGGATAGCGCATT 221659 Query 244472 ATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTG 244531 | ||||| | ||||||| |||||||| ||||| |||||||| ||||| ||| ||||| Sbjct 221660 AAAATGAACGCATCGGCCATGCCCTGCACACCGATACCGATGGGCCTGTGGCGCATGTTG 221719 Query 244532 GAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGG 244591 || ||| | || || ||||| || || |||| |||||| | ||||| || ||||| Sbjct 221720 GAACGCTTCGCCTCCGGCACCGGATAGTAGTTTATGTCGATGATTTTGTTCAGATTGCGT 221779 Query 244592 GTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCG 244651 || | || | |||| | || ||||| | || | ||||| | |||| Sbjct 221780 GTTACTATCTTGGCGACAT---CCTTCAGCTTTA---CGAAATCGTACG--TCCT----- 221826 Query 244652 ATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCA---CC 244708 || | ||| | || ||| ||| || |||| |||||| ||||| || || | | Sbjct 221827 ATCG-GAT-TTTACGAACATGTTCAGTGCGATCGAGGCCAGATTGCAAACCGCAATTTCA 221884 Query 244709 TCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCC 244768 |||| ||| | ||||| |||||||| ||||| | |||| ||||| |||||||| Sbjct 221885 TCCTTCGA---CGAGTACTCCACAATCTCAGTGCACAAGTTAGAACACTTAATGGTGCCA 221941 Query 244769 AGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCG 244828 | || ||| || ||| ||| |||||| || |||||||| ||||| | || | || Sbjct 221942 ATGTTCTGCTGGTTGCTTTTGCGGTTGCATGCATCCTTGTACAGCATATACGGTACGCCC 222001 Query 244829 GTCTCGAGCTGGGCGACGAGGA-CGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCG 244887 || || | ||| | | | || ||| | ||| | ||| ||||| ||| | Sbjct 222002 GTTTCCACCTGCGATTCAATGATCGC-GAACCACAAATCCTGTGCCTTCACCTGGCGAAT 222060 Query 244888 AGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTC 244947 | |||||| |||||||| |||||||| |||||||||| |||||| || Sbjct 222061 AAAACGACCCTCTTTCTCGTAGCCAGTGTACAGTGCCTCGAACTTTTCACCCCAGCTATC 222120 Query 244948 GTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCAC---TCG-CCGCCGTCCTTGA 245003 | ||||| || |||||||| ||||||||| ||| |||| ||| | Sbjct 222121 AGACAAACCGGGACAATCGTGAGGGCACATTAGACTCCACATTTCGTTCGCC-TCC---A 222176 Query 245004 CCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCT 245063 ||| || |||||| || || || ||||| | ||| | || | ||| | | | | || Sbjct 222177 CCCGCTCCATGAACAGATCCGGAATCCACAAGGCGTAAAACATGTCGCGTGCACGCACCT 222236 Query 245064 CGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCT 245123 | || ||| ||||| ||| |||| |||| ||| || || || || ||||||| || | Sbjct 222237 CCTCTTTGCCGGTGTTTTTCTTCAGATCCAGAAACTCGAACACATCACCGTGCCACGGTT 222296 Query 245124 CCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGA 245183 | | ||||| || | || || || ||||||||||| ||||| |||| | | ||| Sbjct 222297 CGAGGTAGATGGCAAAAGCTCCCGGGCGCTTGTTGCCACCCTGATCCA----CGTATCGG 222352 Query 245184 GC----GCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCC 245239 || |||| | | |||||| | ||||| | ||||| || || || |||||| Sbjct 222353 GCCGTATTGTTGTACACGCGCAGCATTGGCACCAACCCGTTTGAAATTCCATTCGTGCCC 222412 Query 245240 TTGATGTA 245247 |||||| Sbjct 222413 GAGATGTA 222420 >seq628 Length=1452984 Score = 172 bits (190), Expect = 1e-37 Identities = 293/424 (69%), Gaps = 3/424 (1%) Strand=Plus/Minus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 |||||||| || || || ||| |||| ||| | ||||||||||| || ||||| || ||| Sbjct 708430 CTGTTCAATGCAATTGAAACGCTGCCGTGCGTGAAGAAGAAGGCCGATTGGGCACTGAAC 708371 Query 42669 TGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAG 42728 |||||| || | |||| || |||||| | | || || ||| | || ||||| Sbjct 708370 TGGATCTCAAGCAAGAAGGCAAACTTTGGCGAGCGTGTCGTCGCGTTTGCTGCTGTCGAA 708311 Query 42729 GGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATG 42788 || ||||||||| || ||| ||| |||| |||||||| ||| || | |||| Sbjct 708310 GGTATCTTCTTCAGCGGTAGCTTTGCCGCCATTTTCTGGCTGAAGAAGCGTGGACTGATG 708251 Query 42789 CCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTT 42848 || ||||| |||||||||||||| || || | || || || || || | |||||| Sbjct 708250 CCGGGACTTACCTTCTCGAACGAGCTGATTTCGCGTGATGAAGGACTACACTGTGACTTT 708191 Query 42849 GCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCC 42908 |||||||| |||| | | || || || || ||||||||||| || |||| Sbjct 708190 GCCTGCCTGATGTT---TAAGTATCTGGTACAGAAACCTTCGAAGGAGCGCGTGACGGCC 708134 Query 42909 ATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCC 42968 |||||| || || || | |||||| |||| || | ||| | | ||||| || Sbjct 708133 ATCATCCGTGATGCGGTTGCAATCGAGCAGGAATTTTTGACGAAAGCACTGCCAGTCGAT 708074 Query 42969 CTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTC 43028 || |||| |||||| ||| || |||| ||||||| ||| ||| ||||| | | | Sbjct 708073 ATGCTCGGTATGAACTGCGATCTGATGTCACAGTACATTGAGTTCGTAGCCGATCGTTTG 708014 Query 43029 CTGT 43032 |||| Sbjct 708013 CTGT 708010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944322768497920