Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq497 105 6e-18 >seq497 Length=402095 Score = 105 bits (116), Expect = 6e-18 Identities = 232/345 (67%), Gaps = 2/345 (1%) Strand=Plus/Minus Query 20237 AGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGA 20296 || ||||||||||| || | ||||| || | | || ||||| ||||||||||| ||| Sbjct 124268 AGTCCAGTAACATGGGCGATCATATGGGTCAGCAAAGAGTAGCTAGCAATGTTAAACGGA 124209 Query 20297 ACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCT 20356 || ||||| || | || |||| | |||||||| ||| || || | ||| || | | Sbjct 124208 ACACCCAATCCTACATCAGCCGATCGCTGATACATCTGGCAAGACAACTCTCCATTGCCA 124149 Query 20357 ACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGG 20416 ||| |||| || || ||||||| ||||| | ||||| | | || | || Sbjct 124148 ACAAAAAACTGTGCCAAGCAGTGACACGGCGGTAAGGCCATGTTGGGAATATCGGAAGGA 124089 Query 20417 TTCCACGCACACATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATG 20476 ||||| || | ||| ||||||| | ||||| ||||| ||||||||| | | | Sbjct 124088 TTCCAAGCGCTCATGATGATTCGACGATCGTAAGGATTGTTTTTTATTTTGTGTATCACT 124029 Query 20477 TACGACAATTGGTCAAACCCCTGGCCTGTATAGTCAGCATCCGCGT-CCACGTACGCCGC 20535 | | ||| ||||| | ||||| ||||| || || | | || | ||| || Sbjct 124028 TCTGCCAACTGGTCGATTCCCTGTCCTGTGTAATCGTCGT-GGCATGTTTTGTATTTTGC 123970 Query 20536 CCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCC 20580 |||||||| | |||||| || || ||||| || || || || || Sbjct 123969 ACCAAAGTGACGCCACTGAAAGCCATAAACTGGACCTAAGTCACC 123925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441365120113280