Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq628 98.7 8e-16 seq575 87.8 1e-12 >seq628 Length=1452984 Score = 98.7 bits (108), Expect = 8e-16 Identities = 204/296 (69%), Gaps = 6/296 (2%) Strand=Plus/Plus Query 37815 GAAAACGCCGACACGCACGATC-TCTTGTGGAACGCGGCTCAAATTCAGCTTGTGCGCGA 37873 |||| ||| | |||||||| |||| |||||| |||| || | ||| | || || Sbjct 270512 GAAACGGCCAAAACGCACGACGATCTT-TGGAACTCGGCCCAGCTGCAGATGGTAAAGGA 270570 Query 37874 GGGTAAGATGCATCAGTATATGCGCATGTATTGGTGCAAGAAAATTTTGGAATGGTCTGA 37933 |||||| ||||| | | | | ||||| ||| ||| || || | || ||| | | Sbjct 270571 GGGTAAAATGCACGGCTTTCTAAGGATGTACTGGGCCAAAAAGATACTCGAGTGGACAAA 270630 Query 37934 TGATGCTC-AGACCGCGCTCAACTACGCCATTTATCTCAATGATAAGTACAGCTTGGACG 37992 | || | || ||||| | ||||| ||||| || ||| |||||| |||| | Sbjct 270631 A-ACGCCCGAGGAAGCGCTTGAAACGGCCATCTATCTGAACGATCGGTACAGTCTGGATG 270689 Query 37993 GGCGTGATCCCAACGGTTACGTCGGCTGTTTGTGGTCTATATGCGGGC-TACACGATAGA 38051 | || ||||| |||||||||||||| || ||||||| || ||||||| | |||||| Sbjct 270690 GACGCGATCCGAACGGTTACGTCGGTTGCATGTGGTCGAT-TGCGGGCATTCACGATCAG 270748 Query 38052 GCCTGGCGCGAGATTCCCATTTACGGCAAGATTCGGTACATGAACTACAACGGATG 38107 | ||| ||| | |||| |||||| ||| ||||||||||||| | ||||| Sbjct 270749 GGATGGAAGGAGCGTGAAATTTTCGGCAAAATTAGGTACATGAACTATGAAGGATG 270804 >seq575 Length=281738 Score = 87.8 bits (96), Expect = 1e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| || |||||||||||||| || ||||||||||||||| || || | Sbjct 24173 ACCACCGCGCAGGCGAAGCACCAGATGAAGGGTCGACTCCTTCTGAATGTTATAGTCAGA 24114 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || | || | || |||| ||||| ||||| || |||| |||||||||||| ||| Sbjct 24113 CAGTGTGCGTCCATCCTCCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCCGGCGG 24054 Query 34020 CACGCTCTCTTTGTCC 34035 | || ||| || ||| Sbjct 24053 GATGCCCTCCTTATCC 24038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397055663836384