Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28]
1,392 sequences; 225,223,604 total letters
Query= NC_009503.1
Length=124121
Score E
Sequences producing significant alignments: (Bits) Value
seq628 98.7 8e-16
seq575 87.8 1e-12
>seq628
Length=1452984
Score = 98.7 bits (108), Expect = 8e-16
Identities = 204/296 (69%), Gaps = 6/296 (2%)
Strand=Plus/Plus
Query 37815 GAAAACGCCGACACGCACGATC-TCTTGTGGAACGCGGCTCAAATTCAGCTTGTGCGCGA 37873
|||| ||| | |||||||| |||| |||||| |||| || | ||| | || ||
Sbjct 270512 GAAACGGCCAAAACGCACGACGATCTT-TGGAACTCGGCCCAGCTGCAGATGGTAAAGGA 270570
Query 37874 GGGTAAGATGCATCAGTATATGCGCATGTATTGGTGCAAGAAAATTTTGGAATGGTCTGA 37933
|||||| ||||| | | | | ||||| ||| ||| || || | || ||| | |
Sbjct 270571 GGGTAAAATGCACGGCTTTCTAAGGATGTACTGGGCCAAAAAGATACTCGAGTGGACAAA 270630
Query 37934 TGATGCTC-AGACCGCGCTCAACTACGCCATTTATCTCAATGATAAGTACAGCTTGGACG 37992
| || | || ||||| | ||||| ||||| || ||| |||||| |||| |
Sbjct 270631 A-ACGCCCGAGGAAGCGCTTGAAACGGCCATCTATCTGAACGATCGGTACAGTCTGGATG 270689
Query 37993 GGCGTGATCCCAACGGTTACGTCGGCTGTTTGTGGTCTATATGCGGGC-TACACGATAGA 38051
| || ||||| |||||||||||||| || ||||||| || ||||||| | ||||||
Sbjct 270690 GACGCGATCCGAACGGTTACGTCGGTTGCATGTGGTCGAT-TGCGGGCATTCACGATCAG 270748
Query 38052 GCCTGGCGCGAGATTCCCATTTACGGCAAGATTCGGTACATGAACTACAACGGATG 38107
| ||| ||| | |||| |||||| ||| ||||||||||||| | |||||
Sbjct 270749 GGATGGAAGGAGCGTGAAATTTTCGGCAAAATTAGGTACATGAACTATGAAGGATG 270804
>seq575
Length=281738
Score = 87.8 bits (96), Expect = 1e-12
Identities = 101/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959
||| || | ||| || |||||||||||||| || ||||||||||||||| || || |
Sbjct 24173 ACCACCGCGCAGGCGAAGCACCAGATGAAGGGTCGACTCCTTCTGAATGTTATAGTCAGA 24114
Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019
|| | || | || |||| ||||| ||||| || |||| |||||||||||| |||
Sbjct 24113 CAGTGTGCGTCCATCCTCCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCCGGCGG 24054
Query 34020 CACGCTCTCTTTGTCC 34035
| || ||| || |||
Sbjct 24053 GATGCCCTCCTTATCC 24038
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397055663836384
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |