Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq949 149 1e-30 seq575 125 2e-23 seq574 86.0 1e-11 >seq949 Length=1771395 Score = 149 bits (164), Expect = 1e-30 Identities = 172/232 (74%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 288243 ATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTC 288302 || |||||| || || | ||| || ||||| | || ||| || || ||||| ||||| Sbjct 446666 ATATCCACCACGTAGACGAAGGACCAGATGGAGAGTCGATTCCTTCTGAATATTGTAGTC 446725 Query 288303 GGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATC 288362 | ||||| || || ||||| || || || || || |||||||||||||| ||| Sbjct 446726 CGACAGCGTACGGCCATCTTCCAACTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTGG 446785 Query 288363 TGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 ||||||||| || |||||||| || || || || || || || || | |||| | || Sbjct 446786 TGGGATTCCCTCCTTATCCTGAATCTTGGCCTTAACATTCTCGATGGTATCGGATGGCTC 446845 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || || ||||||||||| || || |||||||||||||| ||||||||| Sbjct 446846 AACCTCCAGGGTGATCGTCTTTCCAGTTAGAGTCTTGACGAAGATCTGCATT 446897 >seq575 Length=281738 Score = 125 bits (138), Expect = 2e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| || | ||| || ||||||| || || || || || |||||||| | Sbjct 24172 CCACCGCGCAGGCGAAGCACCAGATGAAGGGTCGACTCCTTCTGAATGTTATAGTCAGAC 24113 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || |||||||| || || | || || || |||||||||| |||||| ||| ||| Sbjct 24112 AGTGTGCGTCCATCCTCCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCCGGCGGG 24053 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || ||||||||||| ||||| ||||| || || || | ||| | || || Sbjct 24052 ATGCCCTCCTTATCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACC 23993 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || ||||| || || || || |||||||| |||||||| Sbjct 23992 TCAAGGGTAATAGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 23946 >seq574 Length=269012 Score = 86.0 bits (94), Expect = 1e-11 Identities = 173/255 (68%), Gaps = 14/255 (5%) Strand=Plus/Plus Query 325334 CTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCAG 325393 || ||| |||||| || ||| ||| | || ||| ||||| || | || | | | Sbjct 37978 CTAGCGCTATCCTTTCCGCCCGTCAAGCGCGTACCAAACTGACCGCCAGGATAGAGCAGA 38037 Query 325394 TTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGAT 325453 |||||||||||||||||||| || | |||||| | || ||||| ||| || ||| Sbjct 38038 TTGATGTTATTGCTTCCGACGTAGTTCTGTGCCAAATTTACGATCGTCGAGCAAAGCGAT 38097 Query 325454 GCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCTTC 325513 || ||||| || || ||| | ||| || || |||| ||||| || |||||| Sbjct 38098 TGCTCACCATGATGGTAAGCGGATTTCTCCGCGACCGAACCTGCCAACTGCGCCACCTTC 38157 Query 325514 ACGTC-----GGTCGTCAAATTGCGCTTGAA--AGCTGAATATATCACTTTCCGTTGAGA 325566 || || ||||||| |||||||| || ||| ||| ||| ||||||||| Sbjct 38158 ACCTCACGCTTGTCGTCA-----CGCTTGAAGCAGGTGA--ATAGCACCTTCCGTTGACC 38210 Query 325567 AGGTTTGAAACCATC 325581 ||||| ||||| || Sbjct 38211 CGGTTTCAAACCGTC 38225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179633360863776