Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28]
1,392 sequences; 225,223,604 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq949 149 1e-30
seq575 125 2e-23
seq574 86.0 1e-11
>seq949
Length=1771395
Score = 149 bits (164), Expect = 1e-30
Identities = 172/232 (74%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 288243 ATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTC 288302
|| |||||| || || | ||| || ||||| | || ||| || || ||||| |||||
Sbjct 446666 ATATCCACCACGTAGACGAAGGACCAGATGGAGAGTCGATTCCTTCTGAATATTGTAGTC 446725
Query 288303 GGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATC 288362
| ||||| || || ||||| || || || || || |||||||||||||| |||
Sbjct 446726 CGACAGCGTACGGCCATCTTCCAACTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTGG 446785
Query 288363 TGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422
||||||||| || |||||||| || || || || || || || || | |||| | ||
Sbjct 446786 TGGGATTCCCTCCTTATCCTGAATCTTGGCCTTAACATTCTCGATGGTATCGGATGGCTC 446845
Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474
|| || || ||||||||||| || || |||||||||||||| |||||||||
Sbjct 446846 AACCTCCAGGGTGATCGTCTTTCCAGTTAGAGTCTTGACGAAGATCTGCATT 446897
>seq575
Length=281738
Score = 125 bits (138), Expect = 2e-23
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
|||||||| || | ||| || ||||||| || || || || || |||||||| |
Sbjct 24172 CCACCGCGCAGGCGAAGCACCAGATGAAGGGTCGACTCCTTCTGAATGTTATAGTCAGAC 24113
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| |||||||| || || | || || || |||||||||| |||||| ||| |||
Sbjct 24112 AGTGTGCGTCCATCCTCCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCCGGCGGG 24053
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || ||||||||||| ||||| ||||| || || || | ||| | || ||
Sbjct 24052 ATGCCCTCCTTATCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACC 23993
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || || ||||| || || || || |||||||| ||||||||
Sbjct 23992 TCAAGGGTAATAGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 23946
>seq574
Length=269012
Score = 86.0 bits (94), Expect = 1e-11
Identities = 173/255 (68%), Gaps = 14/255 (5%)
Strand=Plus/Plus
Query 325334 CTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCAG 325393
|| ||| |||||| || ||| ||| | || ||| ||||| || | || | | |
Sbjct 37978 CTAGCGCTATCCTTTCCGCCCGTCAAGCGCGTACCAAACTGACCGCCAGGATAGAGCAGA 38037
Query 325394 TTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGAT 325453
|||||||||||||||||||| || | |||||| | || ||||| ||| || |||
Sbjct 38038 TTGATGTTATTGCTTCCGACGTAGTTCTGTGCCAAATTTACGATCGTCGAGCAAAGCGAT 38097
Query 325454 GCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCTTC 325513
|| ||||| || || ||| | ||| || || |||| ||||| || ||||||
Sbjct 38098 TGCTCACCATGATGGTAAGCGGATTTCTCCGCGACCGAACCTGCCAACTGCGCCACCTTC 38157
Query 325514 ACGTC-----GGTCGTCAAATTGCGCTTGAA--AGCTGAATATATCACTTTCCGTTGAGA 325566
|| || ||||||| |||||||| || ||| ||| ||| |||||||||
Sbjct 38158 ACCTCACGCTTGTCGTCA-----CGCTTGAAGCAGGTGA--ATAGCACCTTCCGTTGACC 38210
Query 325567 AGGTTTGAAACCATC 325581
||||| ||||| ||
Sbjct 38211 CGGTTTCAAACCGTC 38225
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179633360863776
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |