Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq574 91.5 3e-13 >seq574 Length=269012 Score = 91.5 bits (100), Expect = 3e-13 Identities = 185/273 (68%), Gaps = 14/273 (5%) Strand=Plus/Plus Query 297437 GTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGG 297496 ||||| ||||| | | || ||| |||||| || ||| ||| | || ||| ||||| Sbjct 37960 GTGAAGATATACCTGGGGCTAGCGCTATCCTTTCCGCCCGTCAAGCGCGTACCAAACTGA 38019 Query 297497 CCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACG 297556 || | || | | | |||||||||||||||||||| || | |||||| | || ||| Sbjct 38020 CCGCCAGGATAGAGCAGATTGATGTTATTGCTTCCGACGTAGTTCTGTGCCAAATTTACG 38079 Query 297557 ATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCG 297616 || ||| || ||| || ||||| || || ||| | ||| || || |||| Sbjct 38080 ATCGTCGAGCAAAGCGATTGCTCACCATGATGGTAAGCGGATTTCTCCGCGACCGAACCT 38139 Query 297617 CTGAACTGTGCAACCTTCACGTC-----GGTCGTCAAATTGCGCTTGAA--AGCTGAATA 297669 ||||| || |||||||| || ||||||| |||||||| || ||| | Sbjct 38140 GCCAACTGCGCCACCTTCACCTCACGCTTGTCGTCA-----CGCTTGAAGCAGGTGA--A 38192 Query 297670 TATCACTTTCCGTTGAGAAGGTTTGAAACCATC 297702 || ||| ||||||||| ||||| ||||| || Sbjct 38193 TAGCACCTTCCGTTGACCCGGTTTCAAACCGTC 38225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102860330135200