Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq872 127 2e-24 >seq872 Length=887634 Score = 127 bits (140), Expect = 2e-24 Identities = 667/1044 (64%), Gaps = 33/1044 (3%) Strand=Plus/Plus Query 113597 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGAC 113656 || ||||||||||| |||||||| || ||| |||||| || || | ||| ||||| | | Sbjct 220982 CGCAGGTAGTACATGCCCGTCTTTAGTCCCATCTTCCACGCGTAGAAATGGATCGACGTC 221041 Query 113657 AACTTGGAGAGTGTTGGACTTT-CCATGAAGAGGTTCATACTTTGGGATTGATCGATGAA 113715 | |||| | ||| | || ||| | | ||| | ||| || |||||||| || Sbjct 221042 AGCTTGCC-ATAGTTCGGCTCGGCCACGTGTATGTTAAATGATTGTGACTGATCGATAAA 221100 Query 113716 GCGTCCACGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCT 113775 ||| ||||| |||||||| | || |||| | ||| ||||| || || | Sbjct 221101 CGCTCCCCGATCGGCCGCCATTTTGATGGATGTTTTCACCGAGATCTCCCATACCGTCTT 221160 Query 113776 GTAGAGGTTCTTAATATCATCTGGGAT--ATCCACGATATTTTGGATGGAGCCACCCGCC 113833 ||| |||| || || | ||| || || || || ||||| || || || Sbjct 221161 GTACAGGTCGCGGATTTCCTTTGGTATTGATTCA--ATGTTTTGAATCGATCCGTTGT-- 221216 Query 113834 TTGACCA--TGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCA 113891 | ||| | || | |||||| || ||| | ||| ||| | | ||||| | || Sbjct 221217 TGGACAAGATGTTGTTCTTCATGTCAAGATCCCACAAACCCATCGCTGTTAGATCTTGCA 221276 Query 113892 CGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGG 113951 ||||| | || || || ||||| |||| || |||| || | || | Sbjct 221277 GCAGATGATGGTTCACCACCTGGAACTCGCCCGATAGCACACGTCGGTTGTAAACGTTCG 221336 Query 113952 TCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCA 114011 |||||| ||||| ||| |||||||||| ||||| ||||| || || || ||||| |||| Sbjct 221337 ACGTGTACGGCTCGAAGGACTCATTGTTGCCCAATATTTGTGCCGTCGAAGCTGTCGGCA 221396 Query 114012 TGGGTGCCATGAGAAGGCTGTTACGGAGACCCT--TTTCCCTAATGCGTTCCTTGAGGGC 114069 | ||||||| || || |||||| | ||| | ||| | ||| ||||| | | Sbjct 221397 TCGGTGCCAGCAGTAGCGAGTTACGAATACCGTGCTTTGC--AATCTTCTCCTTCAACTC 221454 Query 114070 GTCCCAGT--CGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCT 114127 ||||| | || | | | | || | |||||| || |||| |||| ||| Sbjct 221455 TGTCCAGTTCCACAGATCCG--TCGGTTCTTTGTTCCACATTTCGTACTGTAGGACACCC 221512 Query 114128 TGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGGAG 114187 | | |||| | || ||| | ||||||||||| || || | ||||||||| || Sbjct 221513 TTGCTCACTGGACAACCTTCATACGTCTCGTATGGACCGTCCCGTGCAGCCAATTCGCAG 221572 Query 114188 CTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTT--GG 114245 || || || || ||| | | || || || ||||| || | ||||| || || || Sbjct 221573 CTTGCTTCCAGTGCTCCATAGTAGATGGTTTCAAATATTTGTTGATTCA--GCTTTTGGG 221630 Query 114246 CCTCGTCGGAATCAAACGCGAGTCGGCAC-AAAATAAATACATCCGCGAGACCTTGGACA 114304 |||| ||| || | | || ||| ||||| || |||| || | || || ||| Sbjct 221631 CCTCTTCGCTTTCGTATG-GATAGCGCATTAAAATGAACGCATCGGCCATGCCCTGCACA 221689 Query 114305 CCGAGGCCAATTGGGCGATGTCTCATATTAGACT--TTCGAGCGGTCTCCACGGGATAAA 114362 |||| || || || | || | ||| || || |||| | | ||| ||||| Sbjct 221690 CCGATACCGATGGGCCTGTGGCGCATGTTGGAACGCTTCG--CCTCCGGCACCGGATAGT 221747 Query 114363 AATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCT 114422 | || | ||||| | | || ||||| || || | ||| | || || | |||| Sbjct 221748 AGTTTATGTCGATGATTTTGTTCAGATTGCGTGTTACTATCTTGGCGACATCCTTCAGCT 221807 Query 114423 TTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCA 114482 || || |||| | | | | || || || || | || ||||| || |||| Sbjct 221808 TTACGAAATCGTACGTCCTA---TCGGATTTTACGAACATGTTCAGTGCGATCGAGGCCA 221864 Query 114483 GATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTG 114542 |||| || || | | |||||||| | |||||| | ||| || || ||||| || | Sbjct 221865 GATTGCAAACCGCAATTTCATCCTTCGACGAGTACTCCACAATCTCAGTGCACAAGTTAG 221924 Query 114543 AACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTG-TGTTACACGCATCCTTGTAA 114601 ||| |||||||||||| | ||||| || ||| |||| ||| || ||||||||||| Sbjct 221925 AACACTTAATGGTGCCAATGTTCTGCTG-GTTGCTTTTGCGGTTGCATGCATCCTTGTAC 221983 Query 114602 AGCATGTATGGCGTCCCCGTCTCC 114625 ||||| || || ||||| ||| Sbjct 221984 AGCATATACGGTACGCCCGTTTCC 222007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597343206047360