Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28]
1,392 sequences; 225,223,604 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq691 96.9 4e-15
seq517 96.9 4e-15
seq472 96.9 4e-15
seq14 93.3 5e-14
seq335 89.7 6e-13
seq522 87.8 2e-12
seq456 87.8 2e-12
seq1 87.8 2e-12
seq672 86.0 7e-12
seq949 84.2 2e-11
>seq691
Length=97490
Score = 96.9 bits (106), Expect = 4e-15
Identities = 70/81 (86%), Gaps = 0/81 (0%)
Strand=Plus/Minus
Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057
||||| ||||||| || | | |||||||||| ||||||||||||||||||||| ||||
Sbjct 47178 AAAAAGTTTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 47119
Query 57058 TCACCACTATACTACCGAGGA 57078
| |||||||||||| ||||||
Sbjct 47118 TGACCACTATACTATCGAGGA 47098
>seq517
Length=1261231
Score = 96.9 bits (106), Expect = 4e-15
Identities = 70/81 (86%), Gaps = 0/81 (0%)
Strand=Plus/Minus
Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057
||||| ||||||| || | | |||||||||| ||||||||||||||||||||| ||||
Sbjct 1167808 AAAAACTTTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 1167749
Query 57058 TCACCACTATACTACCGAGGA 57078
| |||||||||||| ||||||
Sbjct 1167748 TGACCACTATACTATCGAGGA 1167728
>seq472
Length=1835194
Score = 96.9 bits (106), Expect = 4e-15
Identities = 70/81 (86%), Gaps = 0/81 (0%)
Strand=Plus/Minus
Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057
||||| ||||||| || | | |||||||||| ||||||||||||||||||||| ||||
Sbjct 1323140 AAAAACTTTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 1323081
Query 57058 TCACCACTATACTACCGAGGA 57078
| |||||||||||| ||||||
Sbjct 1323080 TGACCACTATACTATCGAGGA 1323060
Score = 93.3 bits (102), Expect = 5e-14
Identities = 71/83 (86%), Gaps = 1/83 (1%)
Strand=Plus/Plus
Query 56998 AAAAATTTTC-TCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056
|||| ||||| ||| || | | |||||||||| ||||||||||||||||||||| |||
Sbjct 1480062 AAAACTTTTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 1480121
Query 57057 CTCACCACTATACTACCGAGGAT 57079
|| |||||||||||| |||||||
Sbjct 1480122 CTGACCACTATACTATCGAGGAT 1480144
>seq14
Length=602066
Score = 93.3 bits (102), Expect = 5e-14
Identities = 69/81 (85%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057
|||||| ||||| || | | |||||||||| ||||||||||||||||||||| ||||
Sbjct 539303 AAAAATCCTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 539362
Query 57058 TCACCACTATACTACCGAGGA 57078
| |||||||||||| ||||||
Sbjct 539363 TGACCACTATACTATCGAGGA 539383
Score = 93.3 bits (102), Expect = 5e-14
Identities = 71/83 (86%), Gaps = 1/83 (1%)
Strand=Plus/Plus
Query 56998 AAAAATTT-TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056
||||||| ||||| || | | |||||||||| ||||||||||||||||||||| |||
Sbjct 539763 AAAAATTCCTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 539822
Query 57057 CTCACCACTATACTACCGAGGAT 57079
|| |||||||||||| |||||||
Sbjct 539823 CTGACCACTATACTATCGAGGAT 539845
Score = 89.7 bits (98), Expect = 6e-13
Identities = 70/83 (84%), Gaps = 2/83 (2%)
Strand=Plus/Minus
Query 56998 AAAAATTT--TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 57055
||||| || ||||| || | | |||||||||| ||||||||||||||||||||| ||
Sbjct 540068 AAAAAGTTCCTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 540009
Query 57056 ACTCACCACTATACTACCGAGGA 57078
||| |||||||||||| ||||||
Sbjct 540008 ACTGACCACTATACTATCGAGGA 539986
>seq335
Length=1493947
Score = 89.7 bits (98), Expect = 6e-13
Identities = 70/83 (84%), Gaps = 2/83 (2%)
Strand=Plus/Minus
Query 56998 AAAAATTT--TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 57055
||| |||| ||||| || | | |||||||||| ||||||||||||||||||||| ||
Sbjct 295449 AAAGATTTCCTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 295390
Query 57056 ACTCACCACTATACTACCGAGGA 57078
||| |||||||||||| ||||||
Sbjct 295389 ACTGACCACTATACTATCGAGGA 295367
>seq522
Length=317854
Score = 87.8 bits (96), Expect = 2e-12
Identities = 65/76 (86%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062
||| |||| || | | |||||||||| ||||||||||||||||||||| ||||| |||
Sbjct 260746 TTTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACC 260805
Query 57063 ACTATACTACCGAGGA 57078
||||||||| ||||||
Sbjct 260806 ACTATACTATCGAGGA 260821
>seq456
Length=439401
Score = 87.8 bits (96), Expect = 2e-12
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 391959 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 392018
Query 57067 TACTACCGAGGAT 57079
||||| |||||||
Sbjct 392019 TACTATCGAGGAT 392031
Score = 87.8 bits (96), Expect = 2e-12
Identities = 67/78 (86%), Gaps = 1/78 (1%)
Strand=Plus/Plus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 392759 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 392818
Query 57066 ATACTACCGAGG-ATTGA 57082
|||||| ||||| |||||
Sbjct 392819 ATACTATCGAGGAATTGA 392836
Score = 87.8 bits (96), Expect = 2e-12
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 393962 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 394021
Query 57066 ATACTACCGAGGA 57078
|||||| ||||||
Sbjct 394022 ATACTATCGAGGA 394034
>seq1
Length=3832769
Score = 87.8 bits (96), Expect = 2e-12
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 3334955 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 3334896
Query 57066 ATACTACCGAGGA 57078
|||||| ||||||
Sbjct 3334895 ATACTATCGAGGA 3334883
>seq672
Length=1102954
Score = 86.0 bits (94), Expect = 7e-12
Identities = 150/216 (69%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053
|||| ||||| ||| | || ||||| ||||| ||||| || | |||||| || |
Sbjct 391589 CGCAGCACCAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCCGACAGAGTGCGGCCA 391648
Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113
|| || ||||||||||| ||||| ||||| |||||||| || | || | | |||||
Sbjct 391649 TCCTCCAGCTGCTTACCGGCGAAGATGAGACGCTGCTGATCTGGGGGAATTCCTTCCTTA 391708
Query 42114 TCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172
||| ||| | |||| || | | | | |||||| | || || || | |||||
Sbjct 391709 TCC-TGAATCTTTGCCTTCACATTTTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTGAT 391767
Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
||| ||||| || || || || || || || |||||
Sbjct 391768 GGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCAT 391803
>seq949
Length=1771395
Score = 84.2 bits (92), Expect = 2e-11
Identities = 137/195 (70%), Gaps = 2/195 (1%)
Strand=Plus/Plus
Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077
||||| ||||||||||| || | ||| || || | || || | |||||| ||||| ||
Sbjct 446706 TCCTTCTGAATATTGTAGTCCGACAGCGTACGGCCATCTTCCAACTGCTTGCCAGCAAAG 446765
Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 42136
|| || |||||||| || | ||| | | |||||| ||| ||| | || | || | |
Sbjct 446766 ATCAGACGCTGCTGATCTGGTGGGATTCCCTCCTTATCC-TGAATCTTGGCCTTAACATT 446824
Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196
| | | || ||| | || || || | ||||| || || || ||||| ||||| ||
Sbjct 446825 CTCGATGGTATCGGATGGCTCAACCTCCAGGGTGATCGTCTTTCCAGTTAGAGTCTTGAC 446884
Query 42197 AAAGATTTGCATTTT 42211
||||| ||||||||
Sbjct 446885 GAAGATCTGCATTTT 446899
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543203348097280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |