Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq691 96.9 4e-15 seq517 96.9 4e-15 seq472 96.9 4e-15 seq14 93.3 5e-14 seq335 89.7 6e-13 seq522 87.8 2e-12 seq456 87.8 2e-12 seq1 87.8 2e-12 seq672 86.0 7e-12 seq949 84.2 2e-11 >seq691 Length=97490 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| ||||||| || | | |||||||||| ||||||||||||||||||||| |||| Sbjct 47178 AAAAAGTTTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 47119 Query 57058 TCACCACTATACTACCGAGGA 57078 | |||||||||||| |||||| Sbjct 47118 TGACCACTATACTATCGAGGA 47098 >seq517 Length=1261231 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| ||||||| || | | |||||||||| ||||||||||||||||||||| |||| Sbjct 1167808 AAAAACTTTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 1167749 Query 57058 TCACCACTATACTACCGAGGA 57078 | |||||||||||| |||||| Sbjct 1167748 TGACCACTATACTATCGAGGA 1167728 >seq472 Length=1835194 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| ||||||| || | | |||||||||| ||||||||||||||||||||| |||| Sbjct 1323140 AAAAACTTTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 1323081 Query 57058 TCACCACTATACTACCGAGGA 57078 | |||||||||||| |||||| Sbjct 1323080 TGACCACTATACTATCGAGGA 1323060 Score = 93.3 bits (102), Expect = 5e-14 Identities = 71/83 (86%), Gaps = 1/83 (1%) Strand=Plus/Plus Query 56998 AAAAATTTTC-TCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 |||| ||||| ||| || | | |||||||||| ||||||||||||||||||||| ||| Sbjct 1480062 AAAACTTTTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 1480121 Query 57057 CTCACCACTATACTACCGAGGAT 57079 || |||||||||||| ||||||| Sbjct 1480122 CTGACCACTATACTATCGAGGAT 1480144 >seq14 Length=602066 Score = 93.3 bits (102), Expect = 5e-14 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 |||||| ||||| || | | |||||||||| ||||||||||||||||||||| |||| Sbjct 539303 AAAAATCCTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 539362 Query 57058 TCACCACTATACTACCGAGGA 57078 | |||||||||||| |||||| Sbjct 539363 TGACCACTATACTATCGAGGA 539383 Score = 93.3 bits (102), Expect = 5e-14 Identities = 71/83 (86%), Gaps = 1/83 (1%) Strand=Plus/Plus Query 56998 AAAAATTT-TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 ||||||| ||||| || | | |||||||||| ||||||||||||||||||||| ||| Sbjct 539763 AAAAATTCCTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 539822 Query 57057 CTCACCACTATACTACCGAGGAT 57079 || |||||||||||| ||||||| Sbjct 539823 CTGACCACTATACTATCGAGGAT 539845 Score = 89.7 bits (98), Expect = 6e-13 Identities = 70/83 (84%), Gaps = 2/83 (2%) Strand=Plus/Minus Query 56998 AAAAATTT--TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 57055 ||||| || ||||| || | | |||||||||| ||||||||||||||||||||| || Sbjct 540068 AAAAAGTTCCTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 540009 Query 57056 ACTCACCACTATACTACCGAGGA 57078 ||| |||||||||||| |||||| Sbjct 540008 ACTGACCACTATACTATCGAGGA 539986 >seq335 Length=1493947 Score = 89.7 bits (98), Expect = 6e-13 Identities = 70/83 (84%), Gaps = 2/83 (2%) Strand=Plus/Minus Query 56998 AAAAATTT--TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 57055 ||| |||| ||||| || | | |||||||||| ||||||||||||||||||||| || Sbjct 295449 AAAGATTTCCTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 295390 Query 57056 ACTCACCACTATACTACCGAGGA 57078 ||| |||||||||||| |||||| Sbjct 295389 ACTGACCACTATACTATCGAGGA 295367 >seq522 Length=317854 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062 ||| |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||| Sbjct 260746 TTTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACC 260805 Query 57063 ACTATACTACCGAGGA 57078 ||||||||| |||||| Sbjct 260806 ACTATACTATCGAGGA 260821 >seq456 Length=439401 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 391959 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 392018 Query 57067 TACTACCGAGGAT 57079 ||||| ||||||| Sbjct 392019 TACTATCGAGGAT 392031 Score = 87.8 bits (96), Expect = 2e-12 Identities = 67/78 (86%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 392759 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 392818 Query 57066 ATACTACCGAGG-ATTGA 57082 |||||| ||||| ||||| Sbjct 392819 ATACTATCGAGGAATTGA 392836 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 393962 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 394021 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 394022 ATACTATCGAGGA 394034 >seq1 Length=3832769 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 3334955 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 3334896 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 3334895 ATACTATCGAGGA 3334883 >seq672 Length=1102954 Score = 86.0 bits (94), Expect = 7e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| ||||| ||| | || ||||| ||||| ||||| || | |||||| || | Sbjct 391589 CGCAGCACCAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCCGACAGAGTGCGGCCA 391648 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || ||||||||||| ||||| ||||| |||||||| || | || | | ||||| Sbjct 391649 TCCTCCAGCTGCTTACCGGCGAAGATGAGACGCTGCTGATCTGGGGGAATTCCTTCCTTA 391708 Query 42114 TCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 ||| ||| | |||| || | | | | |||||| | || || || | ||||| Sbjct 391709 TCC-TGAATCTTTGCCTTCACATTTTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTGAT 391767 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| ||||| || || || || || || || ||||| Sbjct 391768 GGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCAT 391803 >seq949 Length=1771395 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| ||||||||||| || | ||| || || | || || | |||||| ||||| || Sbjct 446706 TCCTTCTGAATATTGTAGTCCGACAGCGTACGGCCATCTTCCAACTGCTTGCCAGCAAAG 446765 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 42136 || || |||||||| || | ||| | | |||||| ||| ||| | || | || | | Sbjct 446766 ATCAGACGCTGCTGATCTGGTGGGATTCCCTCCTTATCC-TGAATCTTGGCCTTAACATT 446824 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | || ||| | || || || | ||||| || || || ||||| ||||| || Sbjct 446825 CTCGATGGTATCGGATGGCTCAACCTCCAGGGTGATCGTCTTTCCAGTTAGAGTCTTGAC 446884 Query 42197 AAAGATTTGCATTTT 42211 ||||| |||||||| Sbjct 446885 GAAGATCTGCATTTT 446899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543203348097280