Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28]
1,392 sequences; 225,223,604 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq872 194 2e-44
seq672 123 2e-23
>seq872
Length=887634
Score = 194 bits (214), Expect = 2e-44
Identities = 871/1378 (63%), Gaps = 40/1378 (3%)
Strand=Plus/Plus
Query 154071 GTGAACGGCTCGAACGATTCGTTGTTGCCTAATATTTGAGCTGTAGTTGCTGTGGGCATA 154130
||| |||||||||| || || |||||||| |||||||| || || | ||||| |||||
Sbjct 221339 GTGTACGGCTCGAAGGACTCATTGTTGCCCAATATTTGTGCCGTCGAAGCTGTCGGCATC 221398
Query 154131 TACGCCACCAACAAAGAGTTTCGCAAACCGTGTTTTGCAATGCGCAATTTTAAATCTGCC 154190
|||| || | ||||| || | |||||| |||||||| | || || |||| |
Sbjct 221399 GGTGCCAGCAGTAGCGAGTTACGAATACCGTGCTTTGCAATCTTCTCCTTCAACTCTGTC 221458
Query 154191 CAATTCCACAAGTTGGTAGGTTGCACGTTCCACATGTCGTATTGCAAAACACCCAAACTC 154250
|| ||||||| | || |||| ||||||||| ||||| || | |||||| |||
Sbjct 221459 CAGTTCCACAGATCCGTCGGTTCTTTGTTCCACATTTCGTACTGTAGGACACCCTTGCTC 221518
Query 154251 GCCGGACTGTCACTATAACTAGAGTACGGCCCGTTCAGTTTTGCCAAGTCGCAACTGGCT 154310
| |||| | ||| | ||| || |||| | || ||||| ||||| || |||
Sbjct 221519 ACTGGACAACCTTCATACGTCTCGTATGGACCGTCCCGTGCAGCCAATTCGCAGCTTGCT 221578
Query 154311 TCTAACGCCGCATAGTATACGGTTTCGGCAATTTGTTTGTTTAACATTTTGGCTTTGTCA 154370
|| | || ||||||| | |||||| ||||||| || | | ||| ||| | ||
Sbjct 221579 TCCAGTGCTCCATAGTAGATGGTTTCAAATATTTGTTGATTCAGCTTTTGGGCCTCTTCG 221638
Query 154371 CTTTCGTACGGCAATCCCAATATACAAAAAGCATCGGCGAGCCCTTGAATGCCCACTCCA 154430
|||||||| || | | || || | || |||||||| | || || | || | ||
Sbjct 221639 CTTTCGTATGGATAGCGCATTAAAATGAACGCATCGGCCATGCCCTGCACACCGATACCG 221698
Query 154431 ACGGGTCTGTGTTTTAAATTCGATTCTTTGGCAGCCTCCAGAGGATAATAATTGATATCG 154490
| ||| ||||| | || || || || || || ||||| || || || |||
Sbjct 221699 ATGGGCCTGTGGCGCATGTTGGAACGCTTCGCCTCCGGCACCGGATAGTAGTTTATGTCG 221758
Query 154491 ATAATTTTATTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGCGACAAAATCA 154550
|| ||||| || | || |||||
Sbjct 221759 ATGATTTTGTTCAGATTGCGTGTTACTATCTTGGCGACATCCTTCAGCTTTACGAAATCG 221818
Query 154551 AACAC----TCCGCTTTTAATAAAACGATTTACACACACAGACGCCAAGTTGCAAACGGC 154606
|| || | ||||| || | | || | | || |||| |||||||| ||
Sbjct 221819 TACGTCCTATCGGATTTTACGAACATG-TTCAGTGCGATCGAGGCCAGATTGCAAACCGC 221877
Query 154607 AATTTCTTCAGAACTACT-GTATTGCACAATTTCTGCGCACAAATTACTGCATCGAATGG 154665
|||||| || | || ||| | |||||| || | |||||| ||| || |||||
Sbjct 221878 AATTTCATCCTT-CGACGAGTACTCCACAATCTCAGTGCACAAGTTAGAACACTTAATGG 221936
Query 154666 TGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCGTCTTTGTACAAAATGTACGGGG 154725
|||| | ||| | ||| || |||| ||||||||| || ||||||| || |||||
Sbjct 221937 TGCCAATGTTCTGCTGGTTGCTTTTGCGGTTGCATGCATCCTTGTACAGCATATACGGTA 221996
Query 154726 TGCCCGTTTCCACTTGGGTTTCAATAATTGTGCGAAACAGACTTC--GCGCCTCAACTTG 154783
|||||||||||| || | |||||| || ||||| || | || | |||| || ||
Sbjct 221997 CGCCCGTTTCCACCTGCGATTCAATGAT--CGCGAACCACAAATCCTGTGCCTTCACCTG 222054
Query 154784 ACAAGTAAATCGATTTTCGCTCTCATATTGTTCGTACAGTTTTTCAAACTCTAAACTGTA 154843
| | |||| ||| || |||| || ||||||| || |||| | || |
Sbjct 222055 GCGAATAAAACGACCCTCTTTCTCGTAGCCAGTGTACAGTGCCTCGAACTTTTCACCCCA 222114
Query 154844 CACGTCCGACAAACCGGGACAGCGGTCGGGACACATCAATGACCACATTTCGTTTTGTTG 154903
|| |||||||||||||| || || ||||| | |||||||||||| |
Sbjct 222115 GCTATCAGACAAACCGGGACAATCGTGAGGGCACATTAGACTCCACATTTCGTTCGCCTC 222174
Query 154904 TACGCGTTTCATAAACAAATCCGGCACCCACAAAGCGTACAACAAATCACGCGCCTTTTT 154963
|| || | ||| |||| |||||| | |||||| ||||| |||| || || ||
Sbjct 222175 CACCCGCTCCATGAACAGATCCGGAATCCACAAGGCGTAAAACATGTCGCGTGCACGCAC 222234
Query 154964 GTCTTCAGCGCCCATGTTTCGCTTTAAATTCAAAAAATCATATATGTCGGCGTGCCACGG 155023
|| || ||| ||||| ||| | || || ||| || | | || ||||||||||
Sbjct 222235 CTCCTCTTTGCCGGTGTTTTTCTTCAGATCCAGAAACTCGAACACATCACCGTGCCACGG 222294
Query 155024 CTCTAAATATACGGCCATCGCGCCTTTGCG---TTTTCCTCCTTGATCCACGTGACGCAC 155080
|| | || | ||| | || || ||| || || || |||||||||| || |
Sbjct 222295 TTCGAGGTAGATGGCAAAAGCTCCCGGGCGCTTGTTGCCACCCTGATCCACGTATCGGGC 222354
Query 155081 ACAATTATTGTACACGCGCAACAATGGTTCCACGCCGCTGGCCGTGCCGTTGGTGCC--- 155137
||| ||||||||||||| || ||| ||| ||| | | | || || |||||
Sbjct 222355 CGTATTGTTGTACACGCGCAGCATTGGCACCAACCCGTTTGAAATTCCATTCGTGCCCGA 222414
Query 155138 -ACGTATCGCGCTGCCGCGAGCACGCGCTTTATGAACATTAACGCCCAA-ACCTCCGCCG 155195
| ||| || |||| | | | || || || | |||||| || || |
Sbjct 222415 GATGTACGTACCTTTCGCGCGAATAC----AGTGCACGTTCA-GCCCAATTCCGCCAGCA 222469
Query 155196 TATTTAGATATTTGCGCACAGTCCGCCAAAGTTTCGTACATTCCTTTGATGCTGTCTTCT 155255
|||| || || | ||||| | | || || ||||| || |||| |||||||| ||
Sbjct 222470 GATTTTGAAATCAGTGCACACTGCTTCAGCGTATCGTAGATACCTTCAATGCTGTCGTCC 222529
Query 155256 TTCAACGTCAACAAGAAACACGAAGATAATTGAGGTTG-AGGGCAGCCGGCCGCAAATAA 155314
|| || | ||||||||| || || || || || | | | |||| |||||||| |
Sbjct 222530 GACATGGTGAGCAAGAAACAGGACGACAACTGCGGACGTTGCGTAGCC-GCCGCAAACAT 222588
Query 155315 TGTAGGACTAGCGTGTGTAAACATTTTGTTGGCGGT---TAAG----TTGTAAGTTTCGA 155367
|| || || || ||||| | ||| | ||| |||||||| ||||
Sbjct 222589 GGTCGGTGAGGCATGGGTAAA-------GTAGCGCTCCGAAAGCAGATTGTAAGTCTCGA 222641
Query 155368 TGGCGGCGTCAATGTCACGACCGTGTATACCGATCGCCACGCGCATCAGCATGTGTTG 155425
| || || || ||||| ||| || || |||||||| |||||||||| ||| || ||
Sbjct 222642 TTGCTGCATCGATGTCTTCACCATGAATGCCGATCGCAACGCGCATCAACATATGCTG 222699
>seq672
Length=1102954
Score = 123 bits (136), Expect = 2e-23
Identities = 164/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| || || | || ||||| ||||||| || ||||| || ||||||||||| || |
Sbjct 391576 ACCACCACGAAGTCGCAGCACCAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCCGA 391635
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| ||||| | || || |||||||| ||||| | ||||| |||||||| || || ||
Sbjct 391636 CAGAGTGCGGCCATCCTCCAGCTGCTTACCGGCGAAGATGAGACGCTGCTGATCTGGGGG 391695
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395
||||||||| || || || || ||| ||| ||| || | || || | || ||
Sbjct 391696 AATTCCTTCCTTATCCTGAATCTTTGCCTTCACATTTTCGATCGTGTCCGAAGGCTCGAC 391755
Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| | || | |||||||||||| | ||||| |||||||| |||||
Sbjct 391756 CTCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCAT 391803
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499636106180480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |