Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq872 194 2e-44 seq672 123 2e-23 >seq872 Length=887634 Score = 194 bits (214), Expect = 2e-44 Identities = 871/1378 (63%), Gaps = 40/1378 (3%) Strand=Plus/Plus Query 154071 GTGAACGGCTCGAACGATTCGTTGTTGCCTAATATTTGAGCTGTAGTTGCTGTGGGCATA 154130 ||| |||||||||| || || |||||||| |||||||| || || | ||||| ||||| Sbjct 221339 GTGTACGGCTCGAAGGACTCATTGTTGCCCAATATTTGTGCCGTCGAAGCTGTCGGCATC 221398 Query 154131 TACGCCACCAACAAAGAGTTTCGCAAACCGTGTTTTGCAATGCGCAATTTTAAATCTGCC 154190 |||| || | ||||| || | |||||| |||||||| | || || |||| | Sbjct 221399 GGTGCCAGCAGTAGCGAGTTACGAATACCGTGCTTTGCAATCTTCTCCTTCAACTCTGTC 221458 Query 154191 CAATTCCACAAGTTGGTAGGTTGCACGTTCCACATGTCGTATTGCAAAACACCCAAACTC 154250 || ||||||| | || |||| ||||||||| ||||| || | |||||| ||| Sbjct 221459 CAGTTCCACAGATCCGTCGGTTCTTTGTTCCACATTTCGTACTGTAGGACACCCTTGCTC 221518 Query 154251 GCCGGACTGTCACTATAACTAGAGTACGGCCCGTTCAGTTTTGCCAAGTCGCAACTGGCT 154310 | |||| | ||| | ||| || |||| | || ||||| ||||| || ||| Sbjct 221519 ACTGGACAACCTTCATACGTCTCGTATGGACCGTCCCGTGCAGCCAATTCGCAGCTTGCT 221578 Query 154311 TCTAACGCCGCATAGTATACGGTTTCGGCAATTTGTTTGTTTAACATTTTGGCTTTGTCA 154370 || | || ||||||| | |||||| ||||||| || | | ||| ||| | || Sbjct 221579 TCCAGTGCTCCATAGTAGATGGTTTCAAATATTTGTTGATTCAGCTTTTGGGCCTCTTCG 221638 Query 154371 CTTTCGTACGGCAATCCCAATATACAAAAAGCATCGGCGAGCCCTTGAATGCCCACTCCA 154430 |||||||| || | | || || | || |||||||| | || || | || | || Sbjct 221639 CTTTCGTATGGATAGCGCATTAAAATGAACGCATCGGCCATGCCCTGCACACCGATACCG 221698 Query 154431 ACGGGTCTGTGTTTTAAATTCGATTCTTTGGCAGCCTCCAGAGGATAATAATTGATATCG 154490 | ||| ||||| | || || || || || || ||||| || || || ||| Sbjct 221699 ATGGGCCTGTGGCGCATGTTGGAACGCTTCGCCTCCGGCACCGGATAGTAGTTTATGTCG 221758 Query 154491 ATAATTTTATTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGCGACAAAATCA 154550 || ||||| || | || ||||| Sbjct 221759 ATGATTTTGTTCAGATTGCGTGTTACTATCTTGGCGACATCCTTCAGCTTTACGAAATCG 221818 Query 154551 AACAC----TCCGCTTTTAATAAAACGATTTACACACACAGACGCCAAGTTGCAAACGGC 154606 || || | ||||| || | | || | | || |||| |||||||| || Sbjct 221819 TACGTCCTATCGGATTTTACGAACATG-TTCAGTGCGATCGAGGCCAGATTGCAAACCGC 221877 Query 154607 AATTTCTTCAGAACTACT-GTATTGCACAATTTCTGCGCACAAATTACTGCATCGAATGG 154665 |||||| || | || ||| | |||||| || | |||||| ||| || ||||| Sbjct 221878 AATTTCATCCTT-CGACGAGTACTCCACAATCTCAGTGCACAAGTTAGAACACTTAATGG 221936 Query 154666 TGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCGTCTTTGTACAAAATGTACGGGG 154725 |||| | ||| | ||| || |||| ||||||||| || ||||||| || ||||| Sbjct 221937 TGCCAATGTTCTGCTGGTTGCTTTTGCGGTTGCATGCATCCTTGTACAGCATATACGGTA 221996 Query 154726 TGCCCGTTTCCACTTGGGTTTCAATAATTGTGCGAAACAGACTTC--GCGCCTCAACTTG 154783 |||||||||||| || | |||||| || ||||| || | || | |||| || || Sbjct 221997 CGCCCGTTTCCACCTGCGATTCAATGAT--CGCGAACCACAAATCCTGTGCCTTCACCTG 222054 Query 154784 ACAAGTAAATCGATTTTCGCTCTCATATTGTTCGTACAGTTTTTCAAACTCTAAACTGTA 154843 | | |||| ||| || |||| || ||||||| || |||| | || | Sbjct 222055 GCGAATAAAACGACCCTCTTTCTCGTAGCCAGTGTACAGTGCCTCGAACTTTTCACCCCA 222114 Query 154844 CACGTCCGACAAACCGGGACAGCGGTCGGGACACATCAATGACCACATTTCGTTTTGTTG 154903 || |||||||||||||| || || ||||| | |||||||||||| | Sbjct 222115 GCTATCAGACAAACCGGGACAATCGTGAGGGCACATTAGACTCCACATTTCGTTCGCCTC 222174 Query 154904 TACGCGTTTCATAAACAAATCCGGCACCCACAAAGCGTACAACAAATCACGCGCCTTTTT 154963 || || | ||| |||| |||||| | |||||| ||||| |||| || || || Sbjct 222175 CACCCGCTCCATGAACAGATCCGGAATCCACAAGGCGTAAAACATGTCGCGTGCACGCAC 222234 Query 154964 GTCTTCAGCGCCCATGTTTCGCTTTAAATTCAAAAAATCATATATGTCGGCGTGCCACGG 155023 || || ||| ||||| ||| | || || ||| || | | || |||||||||| Sbjct 222235 CTCCTCTTTGCCGGTGTTTTTCTTCAGATCCAGAAACTCGAACACATCACCGTGCCACGG 222294 Query 155024 CTCTAAATATACGGCCATCGCGCCTTTGCG---TTTTCCTCCTTGATCCACGTGACGCAC 155080 || | || | ||| | || || ||| || || || |||||||||| || | Sbjct 222295 TTCGAGGTAGATGGCAAAAGCTCCCGGGCGCTTGTTGCCACCCTGATCCACGTATCGGGC 222354 Query 155081 ACAATTATTGTACACGCGCAACAATGGTTCCACGCCGCTGGCCGTGCCGTTGGTGCC--- 155137 ||| ||||||||||||| || ||| ||| ||| | | | || || ||||| Sbjct 222355 CGTATTGTTGTACACGCGCAGCATTGGCACCAACCCGTTTGAAATTCCATTCGTGCCCGA 222414 Query 155138 -ACGTATCGCGCTGCCGCGAGCACGCGCTTTATGAACATTAACGCCCAA-ACCTCCGCCG 155195 | ||| || |||| | | | || || || | |||||| || || | Sbjct 222415 GATGTACGTACCTTTCGCGCGAATAC----AGTGCACGTTCA-GCCCAATTCCGCCAGCA 222469 Query 155196 TATTTAGATATTTGCGCACAGTCCGCCAAAGTTTCGTACATTCCTTTGATGCTGTCTTCT 155255 |||| || || | ||||| | | || || ||||| || |||| |||||||| || Sbjct 222470 GATTTTGAAATCAGTGCACACTGCTTCAGCGTATCGTAGATACCTTCAATGCTGTCGTCC 222529 Query 155256 TTCAACGTCAACAAGAAACACGAAGATAATTGAGGTTG-AGGGCAGCCGGCCGCAAATAA 155314 || || | ||||||||| || || || || || | | | |||| |||||||| | Sbjct 222530 GACATGGTGAGCAAGAAACAGGACGACAACTGCGGACGTTGCGTAGCC-GCCGCAAACAT 222588 Query 155315 TGTAGGACTAGCGTGTGTAAACATTTTGTTGGCGGT---TAAG----TTGTAAGTTTCGA 155367 || || || || ||||| | ||| | ||| |||||||| |||| Sbjct 222589 GGTCGGTGAGGCATGGGTAAA-------GTAGCGCTCCGAAAGCAGATTGTAAGTCTCGA 222641 Query 155368 TGGCGGCGTCAATGTCACGACCGTGTATACCGATCGCCACGCGCATCAGCATGTGTTG 155425 | || || || ||||| ||| || || |||||||| |||||||||| ||| || || Sbjct 222642 TTGCTGCATCGATGTCTTCACCATGAATGCCGATCGCAACGCGCATCAACATATGCTG 222699 >seq672 Length=1102954 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | || ||||| ||||||| || ||||| || ||||||||||| || | Sbjct 391576 ACCACCACGAAGTCGCAGCACCAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCCGA 391635 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | || || |||||||| ||||| | ||||| |||||||| || || || Sbjct 391636 CAGAGTGCGGCCATCCTCCAGCTGCTTACCGGCGAAGATGAGACGCTGCTGATCTGGGGG 391695 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||||||| || || || || ||| ||| ||| || | || || | || || Sbjct 391696 AATTCCTTCCTTATCCTGAATCTTTGCCTTCACATTTTCGATCGTGTCCGAAGGCTCGAC 391755 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||||||||| | ||||| |||||||| ||||| Sbjct 391756 CTCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCAT 391803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499636106180480