Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq727 86.0 5e-12 seq539 84.2 2e-11 >seq727 Length=2413216 Score = 86.0 bits (94), Expect = 5e-12 Identities = 168/246 (68%), Gaps = 2/246 (1%) Strand=Plus/Plus Query 108340 GCCGGGTTCGGTGTGACGGCCGGCGTCCATCGGATGTGGACCCACAAAGCCTACAAGGCC 108399 |||||||| || || |||| ||||| || ||| | ||| ||| | |||||||| Sbjct 117562 GCCGGGTTTGGAGTAACGGGTGGCGTACACCGGCTCTGGTGCCATCGGTCGTACAAGGCT 117621 Query 108400 ACCGCCCCGTTCAGGGTGTTCCTGGCGCTTTGCTTCTCGGTGGCAGGACAGAACACCATC 108459 | ||| | | | ||||| | |||| |||| | || || |||||||| ||| Sbjct 117622 AAGCTGCCGCTGCGCATCATCCTGATGTGCTGCTACTCGATCGCCGGCCAGAACACGATC 117681 Query 108460 CCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACAC-GACGGCCGACCC 108518 | ||||| | ||||| | | || ||||||||||| || || ||||| || || Sbjct 117682 TATGACTGGGTCCGGGATCATCGCATCCATCACAAGTACTCGGAAACGGACGG-TGATCC 117740 Query 108519 ACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGA 108578 ||||||||| ||| |||| ||| || ||||||| || ||||| ||| | |||| | Sbjct 117741 ACACAACGCGAACCGGGGCTTCCTGTATGCGCACGTCGGCTGGCTGATGCTTCGCAAGCA 117800 Query 108579 CCCCGA 108584 ||| || Sbjct 117801 CCCGGA 117806 >seq539 Length=1353732 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/154 (73%), Gaps = 4/154 (3%) Strand=Plus/Plus Query 118599 ATATCCCTGCGCACGCGCGGGGTCGCCGTCGCGGTGCAAGCCAGTATCGGCACGCTCGGG 118658 || ||| | || ||||| || | ||||| || || || | ||||| ||| | ||| Sbjct 727230 ATGTCCATCCGTACGCGTGGATTGGCCGTTGCCGTTAGGGCGATGATCGGAACGGTGGGG 727289 Query 118659 AAAATAGTTC--GAAGGACGGAGAGTTTTAGGTAGTCGGATCTAAAATCGTGCCCCCACT 118716 || | |||| | || |||||||||||| |||||||| || ||| ||||| ||||| Sbjct 727290 AA--TTGTTCCCGCAGTACGGAGAGTTTTTTGTAGTCGGGTCGAAAGTCGTGACCCCAGG 727347 Query 118717 CACAGACACAGTGTGCCTCGTCTATCACTATTCG 118750 | | |||||||||||||| || ||||| || || Sbjct 727348 CGGACACACAGTGTGCCTCATCGATCACAATCCG 727381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381766323224448