Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq872 343 1e-89 seq628 100 3e-16 seq672 91.5 1e-13 >seq872 Length=887634 Score = 343 bits (380), Expect = 1e-89 Identities = 1008/1530 (66%), Gaps = 46/1530 (3%) Strand=Plus/Plus Query 153027 TGGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAA 153086 ||||| ||||| || |||||||||| | ||| |||| || || || ||| | Sbjct 221285 TGGTTCACCACCTGGAACTCGCCCGATAGCACACGTCGGTTGTAAACGTTCGACGTGTAC 221344 Query 153087 GGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCC 153146 || || ||||| || || ||||| | |||||| ||||| | || |||||||| ||| Sbjct 221345 GGCTCGAAGGACTCATTGTTGCCCAATATTTGTGCCGTCGAAGCTGTCGGCATCGGTGCC 221404 Query 153147 ACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCCTGCCAATCC 153206 | || | || || || | |||||| | ||| | ||||||||| | ||| | | Sbjct 221405 AGCAGTAGCGAGTTACGAATACCGTGCTTTGCAATCTTCTCCTTCAACTCTGTCCAGTTC 221464 Query 153207 CACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTA--ACACTCCTCGACTGGCGG 153264 ||||| ||| |||| ||||||||| |||||||||| |||| ||| | || | | Sbjct 221465 CACAGATCCGTCGGTTCTTTGTTCCACATTTCGTACTGTAGGACAC-CCTTG-CTCACTG 221522 Query 153265 GACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAGCCTCGA 153324 ||| || || |||| ||| ||||| ||| |||| ||||||||| || || | Sbjct 221523 GACAACCTTCATACGTCTCGTATGGACCGTCCCGTGCAGCCAATTCGCAGCTTGCTTCCA 221582 Query 153325 GCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTTCTTCGCTCT 153384 | || |||||||| |||||||| ||||||| ||| || || |||||||| | Sbjct 221583 GTGCTCCATAGTAGATGGTTTCAAATATTTGTTGATTCAGCTTTTGGGCCTCTTCGCTTT 221642 Query 153385 CGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATGG 153444 |||| || ||||| | | || || ||||||| ||||| | ||||| ||||||| Sbjct 221643 CGTATGGATAGCGCATTAAAATGAACGCATCGGCCATGCCCTGCACACCGATACCGATGG 221702 Query 153445 GTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCGCTATGGGATAGTGATTGCGATCGATAA 153504 | | || | |||| ||| |||| || | ||||||| || ||||| | Sbjct 221703 GCCTGTGGCGCATGTTGGAACGCTTCGCCTCCGGCACCGGATAGTAGTTTATGTCGATGA 221762 Query 153505 TTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCATAGG 153564 ||||||| || ||||| || | || | | |||| || || ||||||| || | Sbjct 221763 TTTTGTTCAGATTGCGTGTTACTATCTTGGCGACATCCTTCAGCTTTACGAAATCGTACG 221822 Query 153565 TCATTTCGTCGACGCGTACGCATCGATTCACGGCAATAGACGCCAGATTACAGACGGCCG 153624 || | ||| || |||| | |||| || || || |||||||| || || || Sbjct 221823 TCCTATCG--GATTT-TACGAACATGTTCAGTGCGATCGAGGCCAGATTGCAAACCGCAA 221879 Query 153625 TCTCTTCGG-CGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACG 153683 | || || || || ||||| ||| ||||| | ||| | ||| || || ||| | Sbjct 221880 TTTCATCCTTCGACGA-GTACTCCACAATCTCAGTGCACAAGTTAGAACACTTAATGGTG 221938 Query 153684 CCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCG 153743 || | || ||||| ||||||||||| ||||| || || ||| | ||||| |||||| || Sbjct 221939 CCAATGTTCTGCTGGTTGCTTTTGCGGTTGCATGCATCCTTGTACAGCATATACGGTACG 221998 Query 153744 CCGGTCTCGACTTGCGTTTCGACGAT---AAACCTATGCAGGTCCTGCGCTCGCACCCGC 153800 || || || || |||| ||| | ||| |||| || ||||| || |||| | Sbjct 221999 CCCGTTTCCACCTGCGATTCAATGATCGCGAACC---ACAAATCCTGTGCCTTCACCTGG 222055 Query 153801 TGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGTAG 153860 | | | || ||||| ||||||| | ||||||| ||| |||| || || || Sbjct 222056 CGAATAAAACGACCCTCTTTCTCGTAGCCAGTGTACAGTGCCTCGAACTTTTCACCCCAG 222115 Query 153861 CAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATCGTCGGCGTTG 153920 | || | | |||||||| | || || ||||| || |||||| |||| || | Sbjct 222116 CTATCAGACAAACCGGGACAATCGTGAGGGCACATTAGACTCCACATTTCGTTCGCCTCC 222175 Query 153921 ACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCA- 153979 || || ||||||||||||||| | ||| | ||||| | | |||||| | | ||| Sbjct 222176 ACCCGCTCCATGAACAGATCCGGAATCCACAAGGCGTAAAACATGTCGCGTG-CACGCAC 222234 Query 153980 ATCCTCCGCGCCCATGTTGCGTTTCAGATTGAG-CACGCTATAGATGTCGGCGTGCCAGG 154038 ||||| ||| |||| ||||||| || || | | | | || ||||||| | Sbjct 222235 CTCCTCTTTGCCGGTGTTTTTCTTCAGATCCAGAAACTCGA-ACACATCACCGTGCCACG 222293 Query 154039 GTTCAATGTAGACGGCCAGGGCACCTTTACGC---TTTCCGCCCTGATCGACGTGGCGCA 154095 |||| | ||||| ||| | || || ||| || || |||||||| |||| || Sbjct 222294 GTTCGAGGTAGATGGCAAAAGCTCCCGGGCGCTTGTTGCCACCCTGATCCACGTATCGGG 222353 Query 154096 CCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGGT---CG 154152 || |||||||| | ||||||| ||| || ||| ||| ||| | || || || || Sbjct 222354 CCGTATTGTTGTACACGCGCAGCATTGGCACCAACCCGTTTGAAATTCCATTCGTGCCCG 222413 Query 154153 AATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAATGCCGCCGCCGT 154212 | ||| | | || ||||| | |||||||| | ||||| ||||| | Sbjct 222414 A---GATGTACGTACCTTTCGCGCGAATACAGTGCACGTTCAGCCCAATTCCGCCAGCAG 222470 Query 154213 ACTTTGATATGGCAGCGCAGTC-GC-CCAGCGTCCTGTAGATGCCGTCGATGCTATCGTC 154270 | ||||| || ||| ||| | || |||||| |||||| || || ||||| ||||| Sbjct 222471 ATTTTGAAAT--CAGTGCACACTGCTTCAGCGTATCGTAGATACCTTCAATGCTGTCGTC 222528 Query 154271 GCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATGCGCGTTCCCGCCGAAAAGAG 154330 | | |||||||||||| || ||| |||||| |||| |||||| ||| | Sbjct 222529 CGACATGGTGAGCAAGAAACAGGACGACAACTGCGGACGTTGCGTAGCCGCCGCAAACAT 222588 Query 154331 GGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTC----ATCATGCGGTACGTTTCGATGG 154386 ||| || || || ||||| | |||| | || ||| || ||||| | Sbjct 222589 GGTCGGTGAGGCATGGGTAAA----GTAGCGCTCCGAAAGCAGATTGTAAGTCTCGATTG 222644 Query 154387 CGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCTGCGGAC 154446 | | ||||| || || || |||||||||| ||| |||||||| | ||| |||||||| | Sbjct 222645 CTGCATCGATGTCTTCACCATGAATGCCGATCGCAACGCGCATCAACATATGCTGCGGTC 222704 Query 154447 GTTCGGCGACTCTATTG---TCAATCTTCAAGAGATATCCATTTTCGAGGGTTTTGTAAC 154503 | || ||| | ||| | |||||||| | || || | |||||| | | Sbjct 222705 GCTCAACGA---TCTTGCCCTTGATCTTCAACAAGTAGGACCGCTCTAAAGTTTTGAAGC 222761 Query 154504 CGAAATACTTGTATTCAAAATCTAGCTCAT 154533 ||||||| ||||| ||||||| | |||| Sbjct 222762 CGAAATAGTTGTACCCAAAATCGCGATCAT 222791 >seq628 Length=1452984 Score = 100 bits (110), Expect = 3e-16 Identities = 272/409 (67%), Gaps = 7/409 (2%) Strand=Plus/Minus Query 52327 TGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCCA 52386 |||||||||| || ||||| | |||||| |||| |||||| ||| | | || | Sbjct 708408 TGCCGTGCGTGAAGAAGAAGGCCGATTGGGCACTGAACTGGATCTCAAGCAAGAAGGCAA 708349 Query 52387 CGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCT 52446 | | |||||| | || || || || ||||| || | || || ||| |||| Sbjct 708348 ACTTTGGCGAGCGTGTCGTCGCGTTTGCTGCTGTCGAAGGTATCTTCTTCAGCGGTAGCT 708289 Query 52447 TTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACG 52506 |||||||||| || | | || | | || | ||||| || || || ||| |||| Sbjct 708288 TTGCCGCCATTTTCTGGCTGAAGAAGCGTGGACTGATGCCGGGACTTACCTTCTCGAACG 708229 Query 52507 AGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGC 52566 || |||| ||||| || |||||||| ||| |||||||| ||||| | ||| | Sbjct 708228 AGCTGATTTCGCGTGATGAAGGACTACACTGTGACTTTGCCTGCCTGATGTTTAAGTATC 708169 Query 52567 GCGTGACCGAAAAATTGGATTCGGA-CACGATCCTGAGCATGTTCAAGGAGGCGGTGGCT 52625 || || |||| || || ||| | || | | ||| || || ||||| || Sbjct 708168 TGGT-ACAGAAACCTTCGA--AGGAGCGCG-TGACGGCCATCATCCGTGATGCGGTTGCA 708113 Query 52626 ATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAAC-GCGCA 52684 ||||| |||| ||||| ||| || ||||| ||||| |||| || |||||| ||| | Sbjct 708112 ATCGAGCAGGAATTTTTGACGAAAGCACTGCCAGTCGATATGCTCGGTATGAACTGCG-A 708054 Query 52685 GTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAG 52733 |||| ||||||| ||||| || || |||||| || || || || Sbjct 708053 TCTGATGTCACAGTACATTGAGTTCGTAGCCGATCGTTTGCTGTTGGAG 708005 >seq672 Length=1102954 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG 138459 |||| || | ||| | | | || ||||| |||||||||||||| || ||| || Sbjct 391589 CGCAGCACCAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCCGACAGAGTGCGGCCA 391648 Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 ||||| || || ||||||| |||| |||||||| || || || || || ||||| || Sbjct 391649 TCCTCCAGCTGCTTACCGGCGAAGATGAGACGCTGCTGATCTGGGGGAATTCCTTCCTTA 391708 Query 138520 TCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAG 138578 || ||| | |||| || | | ||| | ||||| | | ||| ||||| | || | Sbjct 391709 TC-CTGAATCTTTGCCTTCACATTTTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTGAT 391767 Query 138579 CGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || || || || || ||||| || |||||||||||| Sbjct 391768 GGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCATG 391804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496253765034240