Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28]
1,392 sequences; 225,223,604 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq872 343 1e-89
seq628 100 3e-16
seq672 91.5 1e-13
>seq872
Length=887634
Score = 343 bits (380), Expect = 1e-89
Identities = 1008/1530 (66%), Gaps = 46/1530 (3%)
Strand=Plus/Plus
Query 153027 TGGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAA 153086
||||| ||||| || |||||||||| | ||| |||| || || || ||| |
Sbjct 221285 TGGTTCACCACCTGGAACTCGCCCGATAGCACACGTCGGTTGTAAACGTTCGACGTGTAC 221344
Query 153087 GGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCC 153146
|| || ||||| || || ||||| | |||||| ||||| | || |||||||| |||
Sbjct 221345 GGCTCGAAGGACTCATTGTTGCCCAATATTTGTGCCGTCGAAGCTGTCGGCATCGGTGCC 221404
Query 153147 ACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCCTGCCAATCC 153206
| || | || || || | |||||| | ||| | ||||||||| | ||| | |
Sbjct 221405 AGCAGTAGCGAGTTACGAATACCGTGCTTTGCAATCTTCTCCTTCAACTCTGTCCAGTTC 221464
Query 153207 CACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTA--ACACTCCTCGACTGGCGG 153264
||||| ||| |||| ||||||||| |||||||||| |||| ||| | || | |
Sbjct 221465 CACAGATCCGTCGGTTCTTTGTTCCACATTTCGTACTGTAGGACAC-CCTTG-CTCACTG 221522
Query 153265 GACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAGCCTCGA 153324
||| || || |||| ||| ||||| ||| |||| ||||||||| || || |
Sbjct 221523 GACAACCTTCATACGTCTCGTATGGACCGTCCCGTGCAGCCAATTCGCAGCTTGCTTCCA 221582
Query 153325 GCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTTCTTCGCTCT 153384
| || |||||||| |||||||| ||||||| ||| || || |||||||| |
Sbjct 221583 GTGCTCCATAGTAGATGGTTTCAAATATTTGTTGATTCAGCTTTTGGGCCTCTTCGCTTT 221642
Query 153385 CGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATGG 153444
|||| || ||||| | | || || ||||||| ||||| | ||||| |||||||
Sbjct 221643 CGTATGGATAGCGCATTAAAATGAACGCATCGGCCATGCCCTGCACACCGATACCGATGG 221702
Query 153445 GTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCGCTATGGGATAGTGATTGCGATCGATAA 153504
| | || | |||| ||| |||| || | ||||||| || ||||| |
Sbjct 221703 GCCTGTGGCGCATGTTGGAACGCTTCGCCTCCGGCACCGGATAGTAGTTTATGTCGATGA 221762
Query 153505 TTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCATAGG 153564
||||||| || ||||| || | || | | |||| || || ||||||| || |
Sbjct 221763 TTTTGTTCAGATTGCGTGTTACTATCTTGGCGACATCCTTCAGCTTTACGAAATCGTACG 221822
Query 153565 TCATTTCGTCGACGCGTACGCATCGATTCACGGCAATAGACGCCAGATTACAGACGGCCG 153624
|| | ||| || |||| | |||| || || || |||||||| || || ||
Sbjct 221823 TCCTATCG--GATTT-TACGAACATGTTCAGTGCGATCGAGGCCAGATTGCAAACCGCAA 221879
Query 153625 TCTCTTCGG-CGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACG 153683
| || || || || ||||| ||| ||||| | ||| | ||| || || ||| |
Sbjct 221880 TTTCATCCTTCGACGA-GTACTCCACAATCTCAGTGCACAAGTTAGAACACTTAATGGTG 221938
Query 153684 CCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCG 153743
|| | || ||||| ||||||||||| ||||| || || ||| | ||||| |||||| ||
Sbjct 221939 CCAATGTTCTGCTGGTTGCTTTTGCGGTTGCATGCATCCTTGTACAGCATATACGGTACG 221998
Query 153744 CCGGTCTCGACTTGCGTTTCGACGAT---AAACCTATGCAGGTCCTGCGCTCGCACCCGC 153800
|| || || || |||| ||| | ||| |||| || ||||| || |||| |
Sbjct 221999 CCCGTTTCCACCTGCGATTCAATGATCGCGAACC---ACAAATCCTGTGCCTTCACCTGG 222055
Query 153801 TGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGTAG 153860
| | | || ||||| ||||||| | ||||||| ||| |||| || || ||
Sbjct 222056 CGAATAAAACGACCCTCTTTCTCGTAGCCAGTGTACAGTGCCTCGAACTTTTCACCCCAG 222115
Query 153861 CAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATCGTCGGCGTTG 153920
| || | | |||||||| | || || ||||| || |||||| |||| || |
Sbjct 222116 CTATCAGACAAACCGGGACAATCGTGAGGGCACATTAGACTCCACATTTCGTTCGCCTCC 222175
Query 153921 ACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCA- 153979
|| || ||||||||||||||| | ||| | ||||| | | |||||| | | |||
Sbjct 222176 ACCCGCTCCATGAACAGATCCGGAATCCACAAGGCGTAAAACATGTCGCGTG-CACGCAC 222234
Query 153980 ATCCTCCGCGCCCATGTTGCGTTTCAGATTGAG-CACGCTATAGATGTCGGCGTGCCAGG 154038
||||| ||| |||| ||||||| || || | | | | || ||||||| |
Sbjct 222235 CTCCTCTTTGCCGGTGTTTTTCTTCAGATCCAGAAACTCGA-ACACATCACCGTGCCACG 222293
Query 154039 GTTCAATGTAGACGGCCAGGGCACCTTTACGC---TTTCCGCCCTGATCGACGTGGCGCA 154095
|||| | ||||| ||| | || || ||| || || |||||||| |||| ||
Sbjct 222294 GTTCGAGGTAGATGGCAAAAGCTCCCGGGCGCTTGTTGCCACCCTGATCCACGTATCGGG 222353
Query 154096 CCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGGT---CG 154152
|| |||||||| | ||||||| ||| || ||| ||| ||| | || || || ||
Sbjct 222354 CCGTATTGTTGTACACGCGCAGCATTGGCACCAACCCGTTTGAAATTCCATTCGTGCCCG 222413
Query 154153 AATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAATGCCGCCGCCGT 154212
| ||| | | || ||||| | |||||||| | ||||| ||||| |
Sbjct 222414 A---GATGTACGTACCTTTCGCGCGAATACAGTGCACGTTCAGCCCAATTCCGCCAGCAG 222470
Query 154213 ACTTTGATATGGCAGCGCAGTC-GC-CCAGCGTCCTGTAGATGCCGTCGATGCTATCGTC 154270
| ||||| || ||| ||| | || |||||| |||||| || || ||||| |||||
Sbjct 222471 ATTTTGAAAT--CAGTGCACACTGCTTCAGCGTATCGTAGATACCTTCAATGCTGTCGTC 222528
Query 154271 GCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATGCGCGTTCCCGCCGAAAAGAG 154330
| | |||||||||||| || ||| |||||| |||| |||||| ||| |
Sbjct 222529 CGACATGGTGAGCAAGAAACAGGACGACAACTGCGGACGTTGCGTAGCCGCCGCAAACAT 222588
Query 154331 GGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTC----ATCATGCGGTACGTTTCGATGG 154386
||| || || || ||||| | |||| | || ||| || ||||| |
Sbjct 222589 GGTCGGTGAGGCATGGGTAAA----GTAGCGCTCCGAAAGCAGATTGTAAGTCTCGATTG 222644
Query 154387 CGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCTGCGGAC 154446
| | ||||| || || || |||||||||| ||| |||||||| | ||| |||||||| |
Sbjct 222645 CTGCATCGATGTCTTCACCATGAATGCCGATCGCAACGCGCATCAACATATGCTGCGGTC 222704
Query 154447 GTTCGGCGACTCTATTG---TCAATCTTCAAGAGATATCCATTTTCGAGGGTTTTGTAAC 154503
| || ||| | ||| | |||||||| | || || | |||||| | |
Sbjct 222705 GCTCAACGA---TCTTGCCCTTGATCTTCAACAAGTAGGACCGCTCTAAAGTTTTGAAGC 222761
Query 154504 CGAAATACTTGTATTCAAAATCTAGCTCAT 154533
||||||| ||||| ||||||| | ||||
Sbjct 222762 CGAAATAGTTGTACCCAAAATCGCGATCAT 222791
>seq628
Length=1452984
Score = 100 bits (110), Expect = 3e-16
Identities = 272/409 (67%), Gaps = 7/409 (2%)
Strand=Plus/Minus
Query 52327 TGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCCA 52386
|||||||||| || ||||| | |||||| |||| |||||| ||| | | || |
Sbjct 708408 TGCCGTGCGTGAAGAAGAAGGCCGATTGGGCACTGAACTGGATCTCAAGCAAGAAGGCAA 708349
Query 52387 CGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCT 52446
| | |||||| | || || || || ||||| || | || || ||| ||||
Sbjct 708348 ACTTTGGCGAGCGTGTCGTCGCGTTTGCTGCTGTCGAAGGTATCTTCTTCAGCGGTAGCT 708289
Query 52447 TTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACG 52506
|||||||||| || | | || | | || | ||||| || || || ||| ||||
Sbjct 708288 TTGCCGCCATTTTCTGGCTGAAGAAGCGTGGACTGATGCCGGGACTTACCTTCTCGAACG 708229
Query 52507 AGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGC 52566
|| |||| ||||| || |||||||| ||| |||||||| ||||| | ||| |
Sbjct 708228 AGCTGATTTCGCGTGATGAAGGACTACACTGTGACTTTGCCTGCCTGATGTTTAAGTATC 708169
Query 52567 GCGTGACCGAAAAATTGGATTCGGA-CACGATCCTGAGCATGTTCAAGGAGGCGGTGGCT 52625
|| || |||| || || ||| | || | | ||| || || ||||| ||
Sbjct 708168 TGGT-ACAGAAACCTTCGA--AGGAGCGCG-TGACGGCCATCATCCGTGATGCGGTTGCA 708113
Query 52626 ATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAAC-GCGCA 52684
||||| |||| ||||| ||| || ||||| ||||| |||| || |||||| ||| |
Sbjct 708112 ATCGAGCAGGAATTTTTGACGAAAGCACTGCCAGTCGATATGCTCGGTATGAACTGCG-A 708054
Query 52685 GTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAG 52733
|||| ||||||| ||||| || || |||||| || || || ||
Sbjct 708053 TCTGATGTCACAGTACATTGAGTTCGTAGCCGATCGTTTGCTGTTGGAG 708005
>seq672
Length=1102954
Score = 91.5 bits (100), Expect = 1e-13
Identities = 152/217 (70%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG 138459
|||| || | ||| | | | || ||||| |||||||||||||| || ||| ||
Sbjct 391589 CGCAGCACCAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCCGACAGAGTGCGGCCA 391648
Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519
||||| || || ||||||| |||| |||||||| || || || || || ||||| ||
Sbjct 391649 TCCTCCAGCTGCTTACCGGCGAAGATGAGACGCTGCTGATCTGGGGGAATTCCTTCCTTA 391708
Query 138520 TCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAG 138578
|| ||| | |||| || | | ||| | ||||| | | ||| ||||| | || |
Sbjct 391709 TC-CTGAATCTTTGCCTTCACATTTTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTGAT 391767
Query 138579 CGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615
|| || || || || ||||| || ||||||||||||
Sbjct 391768 GGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCATG 391804
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496253765034240
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