Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq672 127 2e-24 seq575 118 1e-21 seq949 96.9 3e-15 >seq672 Length=1102954 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||||| ||||| ||| | ||||| || || ||||| ||||| || | Sbjct 391577 CCACCACGAAGTCGCAGCACCAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCCGAC 391636 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| || || ||| |||| | ||||||||||| || || Sbjct 391637 AGAGTGCGGCCATCCTCCAGCTGCTTACCGGCGAAGATGAGACGCTGCTGATCTGGGGGA 391696 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTG-CTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || ||||| ||| ||| | | || ||| | | ||||| ||||||| | |||||| Sbjct 391697 ATTCCTTCCTTATCC-TGAATCTTTGCCTTCACATTTTCGATCGTGTCCGAAGGCTCGAC 391755 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | || |||||||| || ||||| || |||||||||||| Sbjct 391756 CTCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCATG 391804 >seq575 Length=281738 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || |||||||| | || | ||||| ||| | || ||||| || ||||| || || || Sbjct 24175 GCACCACCGCGCAGGCGAAGCACCAGATGAAGGGTCGACTCCTTCTGAATGTTATAGTCA 24116 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || ||||| ||| || ||||| || || ||| ||||||| ||||||||||| || Sbjct 24115 GACAGTGTGCGTCCATCCTCCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCCGGC 24056 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || ||||||||||| ||| ||| ||| ||| | | |||| || |||| |||| Sbjct 24055 GGGATGCCCTCCTTATCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCG 23996 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || | ||| | || || || || || ||||| || || |||||||| Sbjct 23995 ACCTCAAGGGTAATAGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 23946 >seq949 Length=1771395 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| |||| || | |||| ||| | || || || || ||||||||||| || Sbjct 446669 TCCACCACGTAGACGAAGGACCAGATGGAGAGTCGATTCCTTCTGAATATTGTAGTCCGA 446728 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || ||| || ||| || | ||| || ||||| |||||| ||||||||||| || || Sbjct 446729 CAGCGTACGGCCATCTTCCAACTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTGGTGG 446788 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||| ||| || || ||| | | |||| ||| || | ||| || Sbjct 446789 GATTCCCTCCTTATCCTGAATCTTGGCCTTAACATTCTCGATGGTATCGGATGGCTCAAC 446848 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | ||| || || || ||||| || || || |||||||| Sbjct 446849 CTCCAGGGTGATCGTCTTTCCAGTTAGAGTCTTGACGAAGATCTGCAT 446896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475492526286080