Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq872 233 2e-56 >seq872 Length=887634 Score = 233 bits (258), Expect = 2e-56 Identities = 1171/1851 (63%), Gaps = 36/1851 (2%) Strand=Plus/Minus Query 122841 TACAAATATTTTGGATACAAAACGTTAGAAAACGGA--TATTTGaaaaaaaTCGAGGAAA 122898 ||||| ||||| || | |||||| ||||| ||| || ||| || ||| ||| | Sbjct 222774 TACAACTATTTCGGCTTCAAAACTTTAGAG--CGGTCCTACTTGTTGAAGATCAAGGGCA 222717 Query 122899 AGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGCG 122958 || ||| || || || |||||| | |||||||| || || ||| | || || | Sbjct 222716 AGATCGTTGAGCGACCGCAGCATATGTTGATGCGCGTTGCGATCGGCATTCATGGTGAAG 222657 Query 122959 ACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCGA 123018 ||||||| || | ||| |||||| || || | || | | || || || || Sbjct 222656 ACATCGATGCAGCAATCGAGACTTACAATCTGCTTTCGGAGCGCTACTTTACCCATGCCT 222597 Query 123019 GTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTCA 123078 || || |||| || || | ||| | || |||||||| || ||||| ||||||| Sbjct 222596 CACCGACCATGTTTGCGGCGGCTACGCAACGTCCGCAGTTGTCGTCCTGTTTCTTGCTCA 222537 Query 123079 CCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGATTT 123138 || || || |||||||| |||||||| || || || | || || |||||| Sbjct 222536 CCATGTCGGACGACAGCATTGAAGGTATCTACGATACGCTGAAGCAGTGTGCACTGATTT 222477 Query 123139 CCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGC--CG 123196 | |||| || ||||| || || ||||||||||| ||| | |||| ||| || Sbjct 222476 CAAAATCTGCTGGCGGAATTGGGCTGAACGTGCACT--GTATTCG--CGCGAAAGGTACG 222421 Query 123197 --CATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAAT 123254 |||| |||| | ||||| | |||| | | | |||||||| || ||||| Sbjct 222420 TACATCTCGGGCACGAATGGAATTTCAAACGGGTTGGTGCCAATGCTGCGCGTGTACAAC 222361 Query 123255 AACGCCGTGCGGCACGTCGACCAGGGCGGCAAA---CGCAAAGGCGCGATGGCGATCTAT 123311 || | | || |||| || ||||| ||||| ||| || || | || ||||| Sbjct 222360 AATACGGCCCGATACGTGGATCAGGGTGGCAACAAGCGCCCGGGAGCTTTTGCCATCTAC 222301 Query 123312 CTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGCAACATGGGGGCG 123371 || ||||||||||||| |||||||| ||| ||| | || | || |||| || Sbjct 222300 CTCGAACCGTGGCACGGTGATGTGTTCGAGTTTCTGGATCTGAAGAAAAACACCGGCAAA 222241 Query 123372 GAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCGA 123431 || || | || ||||| |||| ||||| || ||| | || ||| |||| ||| Sbjct 222240 GAGGAGGTGCGTGCACGCGACATGTTTTACGCCTTGTGGATTCCGGATCTGTTCATGGAG 222181 Query 123432 CGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCC---CGATCGGTGTCCCGGCTTG 123488 || || | | ||| ||||| || ||||| || |||| |||||||| ||| Sbjct 222180 CGGGTGGAGGCGAACGAAATGTGGAGTCTAATGTGCCCTCACGAT---TGTCCCGGTTTG 222124 Query 123489 AGCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGGCAAA 123548 || | || | |||| || | ||||| | |||||| || || Sbjct 222123 TCTGATAGCTGGGGTGAAAAGTTCGAGGCACTGTACACTGGCTACGAGAAAGAGGGTCGT 222064 Query 123549 CAGGTTAGTCAGGTTCCGGCACGTGATTTGTTCAAATTTATTATCGAAACACAAGTCGAA 123608 || | ||||| ||||| ||||||| || || ||| | || || ||| Sbjct 222063 TTTATTCGCCAGGTGAAGGCACAGGATTTGTGGTTCGCGATCATTGAATCGCAGGTGGAA 222004 Query 123609 ACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGCAAC 123668 || || ||||| ||||| ||||| || || |||||| | |||| ||| ||| ||| Sbjct 222003 ACGGGCGTACCGTATATGCTGTACAAGGATGCATGCAACCGCAAAAGCAACCAGCAGAAC 221944 Query 123669 TTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAG--CGATGCCG 123726 | || || || || ||| ||| | ||| | || ||| | || ||| ||| | | Sbjct 221943 ATTGGCACCATTAAGTGTTCTAACTTGTGCACTGAGATTGTGGAGTACTCGTCGAAG--G 221886 Query 123727 ATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAATCGTTGCGTCGAAAACG--- 123783 || || | || || || ||| |||| ||||| |||| | ||| || || Sbjct 221885 ATGAAATTGCGGTTTGCAATCTGGCCTCGATCGCACTGAACATGTTCGTAAAATCCGATA 221826 Query 123784 GCGCTTTTAATTTCCAAACGCTCAAACGCATAACAAAAACTGTAGTAAAGAATTTGAACA 123843 | | | ||||| || ||| || | | || | ||| | ||| |||||| Sbjct 221825 GGACGTACGATTTCGTAAAGCTGAAGGATGTCGCCAAGATAGTAACACGCAATCTGAACA 221766 Query 123844 AAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCG---CGTTTGTCTAATTTGAAAC 123900 |||| ||||| | || | ||||| || ||| ||| |||| | || || | Sbjct 221765 AAATCATCGACATAAACTACTATCCGGTGCCGGAGGCGAAGCGTT---CCAACATGCGCC 221709 Query 123901 ACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCTGCGCATGC 123960 |||| || |||| | || | || || ||||||| ||||| | | ||||| | Sbjct 221708 ACAGGCCCATCGGTATCGGTGTGCAGGGCATGGCCGATGCGTTCATTTTAATGCGCTATC 221649 Query 123961 CGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACAATTTATTACG 124020 | ||||||||||| || || | ||| ||| |||||| ||||| || || || | Sbjct 221648 CATACGAAAGCGAAGAGGCCCAAAAGCTGAATCAACAAATATTTGAAACCATCTACTATG 221589 Query 124021 GCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAAAGTTACGCGG 124080 | || |||| || ||||||||| | || | |||| | ||||| | || | | Sbjct 221588 GAGCACTGGAAGCAAGCTGCGAATTGGCTGCACGGGACGGTCCATACGAGACGTATGAAG 221529 Query 124081 GCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTACACCGACAAATT 124140 | | || | |||| ||| | | |||||||| |||||||| |||||| || Sbjct 221528 GTTGTCCAGTGAGCAAGGGTGTCCTACAGTACGAAATGTGGAACAAAGAACCGACGGATC 221469 Query 124141 TGTGGGACTGGAGCGTTTTAAAACAACGCATATCGACGCACGGTTTGCGTAACTCGCTGT 124200 ||||| |||||| | || || | || | | ||||||| | ||||||||||| Sbjct 221468 TGTGGAACTGGACAGAGTTGAAGGAGAAGATTGCAAAGCACGGTATTCGTAACTCGCTAC 221409 Query 124201 TGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAATCCTTCG 124260 || |||| |||||||| || | || || ||||| || || ||||| || ||||||| Sbjct 221408 TGCTGGCACCGATGCCGACAGCTTCGACGGCACAAATATTGGGCAACAATGAGTCCTTCG 221349 Query 124261 AGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGCCGGCGATTTTCAAGTGATAA 124320 |||||| ||| || | ||| ||||| ||| || | ||||| || || ||| | | Sbjct 221348 AGCCGTACACGTCGAACGTTTACAACCGACGTGTGCTATCGGGCGAGTTCCAGGTGGTGA 221289 Query 124321 ATCATCATTTGGTGGACGACTTGGTGGCGTTAAATTTGTACGATGAAAACATGCGCAACG 124380 | |||||| || || | || | ||| | ||||| ||| ||||| ||| Sbjct 221288 ACCATCATCTGCTGCAAGATCTAACAGCGATGGGTTTGTGGGATCTTGACATGAAGAACA 221229 Query 124381 AAATTATTGCGGCCGGTGGCAGCG-TGCAGCGCATCGCTTCGATTCCGGAACACGTCAAG 124439 | || | | | || | || | || ||| | || || || | | || Sbjct 221228 ACATCTTGTCCAACAACGG-ATCGATTCAAAACATTGAATCAATACCAAAGGAAATCCGC 221170 Query 124440 CAACTGTACAAAACCGTGTGGGAAATGAAAAATAAACGATTAATTGAAATGGCCGTCGAC 124499 | |||||||| || || ||||| || ||| || || ||||||| | ||| Sbjct 221169 GACCTGTACAAGACGGTATGGGAGATCTCGGTGAAAACATCCATCAAAATGGCGGCCGAT 221110 Query 124500 CGAGGCGCGTACACGGATCAAAGTCAATCTTTTAACGTGTTTGTAGCGGAACCCACCTAC 124559 || || |||| | ||||| ||||| |||||| | || || || || | ||| Sbjct 221109 CGGGGAGCGTTTATCGATCAGTCACAATCATTTAACATACACGTGGCCGAGCCGAACTAT 221050 Query 124560 GCCCGCATGACCAGCATACACATGCACGCGTGGAGCAGCGGACTCAAAACGGGCATGTAT 124619 | | |||| || || | ||||||||| | ||||| || ||||||||||| Sbjct 221049 GGCAAGCTGACGTCGATCCATTTCTACGCGTGGAAGATGGGACTAAAGACGGGCATGTAC 220990 Query 124620 TACTTAAGAACCAAACCGGCGGCCGATGCCATTCAATTTACCGTCGACAAA 124670 ||| | | ||||||||||| | ||||||| |||||||| || |||||| Sbjct 220989 TACCTGCGCACCAAACCGGCCGTAAATGCCATCCAATTTACGGTGGACAAA 220939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451995335144320