Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28]
1,392 sequences; 225,223,604 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq872 233 2e-56
>seq872
Length=887634
Score = 233 bits (258), Expect = 2e-56
Identities = 1171/1851 (63%), Gaps = 36/1851 (2%)
Strand=Plus/Minus
Query 122841 TACAAATATTTTGGATACAAAACGTTAGAAAACGGA--TATTTGaaaaaaaTCGAGGAAA 122898
||||| ||||| || | |||||| ||||| ||| || ||| || ||| ||| |
Sbjct 222774 TACAACTATTTCGGCTTCAAAACTTTAGAG--CGGTCCTACTTGTTGAAGATCAAGGGCA 222717
Query 122899 AGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGCG 122958
|| ||| || || || |||||| | |||||||| || || ||| | || || |
Sbjct 222716 AGATCGTTGAGCGACCGCAGCATATGTTGATGCGCGTTGCGATCGGCATTCATGGTGAAG 222657
Query 122959 ACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCGA 123018
||||||| || | ||| |||||| || || | || | | || || || ||
Sbjct 222656 ACATCGATGCAGCAATCGAGACTTACAATCTGCTTTCGGAGCGCTACTTTACCCATGCCT 222597
Query 123019 GTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTCA 123078
|| || |||| || || | ||| | || |||||||| || ||||| |||||||
Sbjct 222596 CACCGACCATGTTTGCGGCGGCTACGCAACGTCCGCAGTTGTCGTCCTGTTTCTTGCTCA 222537
Query 123079 CCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGATTT 123138
|| || || |||||||| |||||||| || || || | || || ||||||
Sbjct 222536 CCATGTCGGACGACAGCATTGAAGGTATCTACGATACGCTGAAGCAGTGTGCACTGATTT 222477
Query 123139 CCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGC--CG 123196
| |||| || ||||| || || ||||||||||| ||| | |||| ||| ||
Sbjct 222476 CAAAATCTGCTGGCGGAATTGGGCTGAACGTGCACT--GTATTCG--CGCGAAAGGTACG 222421
Query 123197 --CATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAAT 123254
|||| |||| | ||||| | |||| | | | |||||||| || |||||
Sbjct 222420 TACATCTCGGGCACGAATGGAATTTCAAACGGGTTGGTGCCAATGCTGCGCGTGTACAAC 222361
Query 123255 AACGCCGTGCGGCACGTCGACCAGGGCGGCAAA---CGCAAAGGCGCGATGGCGATCTAT 123311
|| | | || |||| || ||||| ||||| ||| || || | || |||||
Sbjct 222360 AATACGGCCCGATACGTGGATCAGGGTGGCAACAAGCGCCCGGGAGCTTTTGCCATCTAC 222301
Query 123312 CTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGCAACATGGGGGCG 123371
|| ||||||||||||| |||||||| ||| ||| | || | || |||| ||
Sbjct 222300 CTCGAACCGTGGCACGGTGATGTGTTCGAGTTTCTGGATCTGAAGAAAAACACCGGCAAA 222241
Query 123372 GAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCGA 123431
|| || | || ||||| |||| ||||| || ||| | || ||| |||| |||
Sbjct 222240 GAGGAGGTGCGTGCACGCGACATGTTTTACGCCTTGTGGATTCCGGATCTGTTCATGGAG 222181
Query 123432 CGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCC---CGATCGGTGTCCCGGCTTG 123488
|| || | | ||| ||||| || ||||| || |||| |||||||| |||
Sbjct 222180 CGGGTGGAGGCGAACGAAATGTGGAGTCTAATGTGCCCTCACGAT---TGTCCCGGTTTG 222124
Query 123489 AGCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGGCAAA 123548
|| | || | |||| || | ||||| | |||||| || ||
Sbjct 222123 TCTGATAGCTGGGGTGAAAAGTTCGAGGCACTGTACACTGGCTACGAGAAAGAGGGTCGT 222064
Query 123549 CAGGTTAGTCAGGTTCCGGCACGTGATTTGTTCAAATTTATTATCGAAACACAAGTCGAA 123608
|| | ||||| ||||| ||||||| || || ||| | || || |||
Sbjct 222063 TTTATTCGCCAGGTGAAGGCACAGGATTTGTGGTTCGCGATCATTGAATCGCAGGTGGAA 222004
Query 123609 ACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGCAAC 123668
|| || ||||| ||||| ||||| || || |||||| | |||| ||| ||| |||
Sbjct 222003 ACGGGCGTACCGTATATGCTGTACAAGGATGCATGCAACCGCAAAAGCAACCAGCAGAAC 221944
Query 123669 TTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAG--CGATGCCG 123726
| || || || || ||| ||| | ||| | || ||| | || ||| ||| | |
Sbjct 221943 ATTGGCACCATTAAGTGTTCTAACTTGTGCACTGAGATTGTGGAGTACTCGTCGAAG--G 221886
Query 123727 ATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAATCGTTGCGTCGAAAACG--- 123783
|| || | || || || ||| |||| ||||| |||| | ||| || ||
Sbjct 221885 ATGAAATTGCGGTTTGCAATCTGGCCTCGATCGCACTGAACATGTTCGTAAAATCCGATA 221826
Query 123784 GCGCTTTTAATTTCCAAACGCTCAAACGCATAACAAAAACTGTAGTAAAGAATTTGAACA 123843
| | | ||||| || ||| || | | || | ||| | ||| ||||||
Sbjct 221825 GGACGTACGATTTCGTAAAGCTGAAGGATGTCGCCAAGATAGTAACACGCAATCTGAACA 221766
Query 123844 AAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCG---CGTTTGTCTAATTTGAAAC 123900
|||| ||||| | || | ||||| || ||| ||| |||| | || || |
Sbjct 221765 AAATCATCGACATAAACTACTATCCGGTGCCGGAGGCGAAGCGTT---CCAACATGCGCC 221709
Query 123901 ACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCTGCGCATGC 123960
|||| || |||| | || | || || ||||||| ||||| | | ||||| |
Sbjct 221708 ACAGGCCCATCGGTATCGGTGTGCAGGGCATGGCCGATGCGTTCATTTTAATGCGCTATC 221649
Query 123961 CGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACAATTTATTACG 124020
| ||||||||||| || || | ||| ||| |||||| ||||| || || || |
Sbjct 221648 CATACGAAAGCGAAGAGGCCCAAAAGCTGAATCAACAAATATTTGAAACCATCTACTATG 221589
Query 124021 GCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAAAGTTACGCGG 124080
| || |||| || ||||||||| | || | |||| | ||||| | || | |
Sbjct 221588 GAGCACTGGAAGCAAGCTGCGAATTGGCTGCACGGGACGGTCCATACGAGACGTATGAAG 221529
Query 124081 GCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTACACCGACAAATT 124140
| | || | |||| ||| | | |||||||| |||||||| |||||| ||
Sbjct 221528 GTTGTCCAGTGAGCAAGGGTGTCCTACAGTACGAAATGTGGAACAAAGAACCGACGGATC 221469
Query 124141 TGTGGGACTGGAGCGTTTTAAAACAACGCATATCGACGCACGGTTTGCGTAACTCGCTGT 124200
||||| |||||| | || || | || | | ||||||| | |||||||||||
Sbjct 221468 TGTGGAACTGGACAGAGTTGAAGGAGAAGATTGCAAAGCACGGTATTCGTAACTCGCTAC 221409
Query 124201 TGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAATCCTTCG 124260
|| |||| |||||||| || | || || ||||| || || ||||| || |||||||
Sbjct 221408 TGCTGGCACCGATGCCGACAGCTTCGACGGCACAAATATTGGGCAACAATGAGTCCTTCG 221349
Query 124261 AGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGCCGGCGATTTTCAAGTGATAA 124320
|||||| ||| || | ||| ||||| ||| || | ||||| || || ||| | |
Sbjct 221348 AGCCGTACACGTCGAACGTTTACAACCGACGTGTGCTATCGGGCGAGTTCCAGGTGGTGA 221289
Query 124321 ATCATCATTTGGTGGACGACTTGGTGGCGTTAAATTTGTACGATGAAAACATGCGCAACG 124380
| |||||| || || | || | ||| | ||||| ||| ||||| |||
Sbjct 221288 ACCATCATCTGCTGCAAGATCTAACAGCGATGGGTTTGTGGGATCTTGACATGAAGAACA 221229
Query 124381 AAATTATTGCGGCCGGTGGCAGCG-TGCAGCGCATCGCTTCGATTCCGGAACACGTCAAG 124439
| || | | | || | || | || ||| | || || || | | ||
Sbjct 221228 ACATCTTGTCCAACAACGG-ATCGATTCAAAACATTGAATCAATACCAAAGGAAATCCGC 221170
Query 124440 CAACTGTACAAAACCGTGTGGGAAATGAAAAATAAACGATTAATTGAAATGGCCGTCGAC 124499
| |||||||| || || ||||| || ||| || || ||||||| | |||
Sbjct 221169 GACCTGTACAAGACGGTATGGGAGATCTCGGTGAAAACATCCATCAAAATGGCGGCCGAT 221110
Query 124500 CGAGGCGCGTACACGGATCAAAGTCAATCTTTTAACGTGTTTGTAGCGGAACCCACCTAC 124559
|| || |||| | ||||| ||||| |||||| | || || || || | |||
Sbjct 221109 CGGGGAGCGTTTATCGATCAGTCACAATCATTTAACATACACGTGGCCGAGCCGAACTAT 221050
Query 124560 GCCCGCATGACCAGCATACACATGCACGCGTGGAGCAGCGGACTCAAAACGGGCATGTAT 124619
| | |||| || || | ||||||||| | ||||| || |||||||||||
Sbjct 221049 GGCAAGCTGACGTCGATCCATTTCTACGCGTGGAAGATGGGACTAAAGACGGGCATGTAC 220990
Query 124620 TACTTAAGAACCAAACCGGCGGCCGATGCCATTCAATTTACCGTCGACAAA 124670
||| | | ||||||||||| | ||||||| |||||||| || ||||||
Sbjct 220989 TACCTGCGCACCAAACCGGCCGTAAATGCCATCCAATTTACGGTGGACAAA 220939
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451995335144320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |