Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq872 125 9e-24 >seq872 Length=887634 Score = 125 bits (138), Expect = 9e-24 Identities = 665/1042 (64%), Gaps = 29/1042 (3%) Strand=Plus/Plus Query 115558 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 115617 || ||||||||||| |||||||| || ||| |||||| || || | ||| || || | | Sbjct 220982 CGCAGGTAGTACATGCCCGTCTTTAGTCCCATCTTCCACGCGTAGAAATGGATCGACGTC 221041 Query 115618 AACTTGGAGAGTGTTGGACTTT-CCATGAAGAGGTTCATACTTTGGGATTGATCGATGAA 115676 | |||| | ||| | || ||| | | ||| | ||| || |||||||| || Sbjct 221042 AGCTTGCC-ATAGTTCGGCTCGGCCACGTGTATGTTAAATGATTGTGACTGATCGATAAA 221100 Query 115677 GCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCT 115736 ||||||||| |||||||| | || |||| | ||| ||||| || || | Sbjct 221101 CGCTCCCCGATCGGCCGCCATTTTGATGGATGTTTTCACCGAGATCTCCCATACCGTCTT 221160 Query 115737 GTAGAGGTTCTTAATATCATCTGGGAT--ATCCACGATATTTTGGATAGAGCCACCTGCC 115794 ||| |||| || || | ||| || || || || ||||| || || || || Sbjct 221161 GTACAGGTCGCGGATTTCCTTTGGTATTGATTCA--ATGTTTTGAATCGATCCGT-TGT- 221216 Query 115795 TTGACCA--TGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCA 115852 | ||| | || | |||||| || ||| | ||| ||| | ||||| | || Sbjct 221217 TGGACAAGATGTTGTTCTTCATGTCAAGATCCCACAAACCCATCGCTGTTAGATCTTGCA 221276 Query 115853 CGAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGG 115912 || || | || || || ||||| |||| || |||| || | ||| | Sbjct 221277 GCAGATGATGGTTCACCACCTGGAACTCGCCCGATAGCACACGTCGGTTGTAAACGTTCG 221336 Query 115913 TCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCA 115972 |||||| ||||| ||| |||||||||| ||||| ||||| || || || ||||| |||| Sbjct 221337 ACGTGTACGGCTCGAAGGACTCATTGTTGCCCAATATTTGTGCCGTCGAAGCTGTCGGCA 221396 Query 115973 TGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGT 116032 | ||||||| || || ||| || | ||| | ||| ||||| | | Sbjct 221397 TCGGTGCCAGCAGTAGCGAGTTACGAATACCGTGCTTTGCAATCTTCTCCTTCAACTCTG 221456 Query 116033 CCCAGT--CGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTG 116090 ||||| | || | | | | || | |||||| || |||| |||| ||| | Sbjct 221457 TCCAGTTCCACAGATCCG--TCGGTTCTTTGTTCCACATTTCGTACTGTAGGACACCCTT 221514 Query 116091 GGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCT 116150 | | |||| | || ||| | ||||| ||||| || || | ||||||||| |||| Sbjct 221515 GCTCACTGGACAACCTTCATACGTCTCGTATGGACCGTCCCGTGCAGCCAATTCGCAGCT 221574 Query 116151 CGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTT--GGCC 116208 || || || ||| | | || || || ||||| || | ||||| || || |||| Sbjct 221575 TGCTTCCAGTGCTCCATAGTAGATGGTTTCAAATATTTGTTGATTCA--GCTTTTGGGCC 221632 Query 116209 TCGTCGGAATCAAACGCGAGACGGCAC-AAAATAAATACATCCGCGAGACCTTGGACACC 116267 || ||| || | | || | ||| ||||| || |||| || | || || ||||| Sbjct 221633 TCTTCGCTTTCGTATG-GATAGCGCATTAAAATGAACGCATCGGCCATGCCCTGCACACC 221691 Query 116268 GAGGCCAATTGGGCGATGTCTCATATTAGACT--TTCGAGCGGTCTCCACGGGATAAAAA 116325 || || || || | || | ||| || || |||| | | ||| ||||| | Sbjct 221692 GATACCGATGGGCCTGTGGCGCATGTTGGAACGCTTCG--CCTCCGGCACCGGATAGTAG 221749 Query 116326 TTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTT 116385 || | ||||| | | || ||||| || || | ||| | || || | |||||| Sbjct 221750 TTTATGTCGATGATTTTGTTCAGATTGCGTGTTACTATCTTGGCGACATCCTTCAGCTTT 221809 Query 116386 TCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGA 116445 || |||| | | | | || || || || | || ||||| || |||||| Sbjct 221810 ACGAAATCGTACGTCCTA---TCGGATTTTACGAACATGTTCAGTGCGATCGAGGCCAGA 221866 Query 116446 TTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAA 116505 || || || | | |||||||| | |||||| | ||| || || ||||| || ||| Sbjct 221867 TTGCAAACCGCAATTTCATCCTTCGACGAGTACTCCACAATCTCAGTGCACAAGTTAGAA 221926 Query 116506 CTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTG-TGTTACACGCATCCTTGTAGAG 116564 | |||||||||||| | ||||| || ||| |||| ||| || ||||||||||| || Sbjct 221927 CACTTAATGGTGCCAATGTTCTGCTG-GTTGCTTTTGCGGTTGCATGCATCCTTGTACAG 221985 Query 116565 CATATATGGCGTCCCCGTCTCC 116586 |||||| || ||||| ||| Sbjct 221986 CATATACGGTACGCCCGTTTCC 222007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613496524974720