Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28]
1,392 sequences; 225,223,604 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq872 125 9e-24
>seq872
Length=887634
Score = 125 bits (138), Expect = 9e-24
Identities = 665/1042 (64%), Gaps = 29/1042 (3%)
Strand=Plus/Plus
Query 115558 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 115617
|| ||||||||||| |||||||| || ||| |||||| || || | ||| || || | |
Sbjct 220982 CGCAGGTAGTACATGCCCGTCTTTAGTCCCATCTTCCACGCGTAGAAATGGATCGACGTC 221041
Query 115618 AACTTGGAGAGTGTTGGACTTT-CCATGAAGAGGTTCATACTTTGGGATTGATCGATGAA 115676
| |||| | ||| | || ||| | | ||| | ||| || |||||||| ||
Sbjct 221042 AGCTTGCC-ATAGTTCGGCTCGGCCACGTGTATGTTAAATGATTGTGACTGATCGATAAA 221100
Query 115677 GCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCT 115736
||||||||| |||||||| | || |||| | ||| ||||| || || |
Sbjct 221101 CGCTCCCCGATCGGCCGCCATTTTGATGGATGTTTTCACCGAGATCTCCCATACCGTCTT 221160
Query 115737 GTAGAGGTTCTTAATATCATCTGGGAT--ATCCACGATATTTTGGATAGAGCCACCTGCC 115794
||| |||| || || | ||| || || || || ||||| || || || ||
Sbjct 221161 GTACAGGTCGCGGATTTCCTTTGGTATTGATTCA--ATGTTTTGAATCGATCCGT-TGT- 221216
Query 115795 TTGACCA--TGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCA 115852
| ||| | || | |||||| || ||| | ||| ||| | ||||| | ||
Sbjct 221217 TGGACAAGATGTTGTTCTTCATGTCAAGATCCCACAAACCCATCGCTGTTAGATCTTGCA 221276
Query 115853 CGAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGG 115912
|| || | || || || ||||| |||| || |||| || | ||| |
Sbjct 221277 GCAGATGATGGTTCACCACCTGGAACTCGCCCGATAGCACACGTCGGTTGTAAACGTTCG 221336
Query 115913 TCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCA 115972
|||||| ||||| ||| |||||||||| ||||| ||||| || || || ||||| ||||
Sbjct 221337 ACGTGTACGGCTCGAAGGACTCATTGTTGCCCAATATTTGTGCCGTCGAAGCTGTCGGCA 221396
Query 115973 TGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGT 116032
| ||||||| || || ||| || | ||| | ||| ||||| | |
Sbjct 221397 TCGGTGCCAGCAGTAGCGAGTTACGAATACCGTGCTTTGCAATCTTCTCCTTCAACTCTG 221456
Query 116033 CCCAGT--CGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTG 116090
||||| | || | | | | || | |||||| || |||| |||| ||| |
Sbjct 221457 TCCAGTTCCACAGATCCG--TCGGTTCTTTGTTCCACATTTCGTACTGTAGGACACCCTT 221514
Query 116091 GGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCT 116150
| | |||| | || ||| | ||||| ||||| || || | ||||||||| ||||
Sbjct 221515 GCTCACTGGACAACCTTCATACGTCTCGTATGGACCGTCCCGTGCAGCCAATTCGCAGCT 221574
Query 116151 CGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTT--GGCC 116208
|| || || ||| | | || || || ||||| || | ||||| || || ||||
Sbjct 221575 TGCTTCCAGTGCTCCATAGTAGATGGTTTCAAATATTTGTTGATTCA--GCTTTTGGGCC 221632
Query 116209 TCGTCGGAATCAAACGCGAGACGGCAC-AAAATAAATACATCCGCGAGACCTTGGACACC 116267
|| ||| || | | || | ||| ||||| || |||| || | || || |||||
Sbjct 221633 TCTTCGCTTTCGTATG-GATAGCGCATTAAAATGAACGCATCGGCCATGCCCTGCACACC 221691
Query 116268 GAGGCCAATTGGGCGATGTCTCATATTAGACT--TTCGAGCGGTCTCCACGGGATAAAAA 116325
|| || || || | || | ||| || || |||| | | ||| ||||| |
Sbjct 221692 GATACCGATGGGCCTGTGGCGCATGTTGGAACGCTTCG--CCTCCGGCACCGGATAGTAG 221749
Query 116326 TTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTT 116385
|| | ||||| | | || ||||| || || | ||| | || || | ||||||
Sbjct 221750 TTTATGTCGATGATTTTGTTCAGATTGCGTGTTACTATCTTGGCGACATCCTTCAGCTTT 221809
Query 116386 TCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGA 116445
|| |||| | | | | || || || || | || ||||| || ||||||
Sbjct 221810 ACGAAATCGTACGTCCTA---TCGGATTTTACGAACATGTTCAGTGCGATCGAGGCCAGA 221866
Query 116446 TTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAA 116505
|| || || | | |||||||| | |||||| | ||| || || ||||| || |||
Sbjct 221867 TTGCAAACCGCAATTTCATCCTTCGACGAGTACTCCACAATCTCAGTGCACAAGTTAGAA 221926
Query 116506 CTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTG-TGTTACACGCATCCTTGTAGAG 116564
| |||||||||||| | ||||| || ||| |||| ||| || ||||||||||| ||
Sbjct 221927 CACTTAATGGTGCCAATGTTCTGCTG-GTTGCTTTTGCGGTTGCATGCATCCTTGTACAG 221985
Query 116565 CATATATGGCGTCCCCGTCTCC 116586
|||||| || ||||| |||
Sbjct 221986 CATATACGGTACGCCCGTTTCC 222007
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613496524974720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |