Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq872 183 5e-41 >seq872 Length=887634 Score = 183 bits (202), Expect = 5e-41 Identities = 343/499 (69%), Gaps = 4/499 (1%) Strand=Plus/Plus Query 203833 CTTCGTCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTA 203892 |||||| ||||||||||| || || ||||| || ||||| || || | | ||| ||||| Sbjct 220933 CTTCGTTTTGTCCACCGTAAATTGGATGGCATTTACGGCCGGTTTGGTGCGCAGGTAGTA 220992 Query 203893 CATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCAC 203952 |||||| |||||||| ||| ||| |||| |||| | || || || | ||| |||| Sbjct 220993 CATGCCCGTCTTTAGTCCCATCTTCCACGCGTAGAAATGGATCGACGTCAGCTTGCCATA 221052 Query 203953 GTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATC 204012 ||| || ||||||| ||| ||||| | || || || ||||| || | ||||||| Sbjct 221053 GTTCGGCTCGGCCACGTGTATGTTAAATGATTGTGACTGATCGATAAACGCTCCCCGATC 221112 Query 204013 TGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCT 204072 || ||||| ||||| || ||| ||| |||||||| ||||||||| ||| ||| | Sbjct 221113 GGCCGCCATTTTGATGGATGTTTTCACCGAGATCTCCCATACCGTCTTGTACAGGTCGCG 221172 Query 204073 GGTGTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCA 204131 | | | | || | | | | | || || ||||| ||||||| || || | | Sbjct 221173 GATTTCCTTTGGTA-TTGATTCAATGTTTTGAATCGATCCGTTGTTGGACAAGATGTTGT 221231 Query 204132 TCCTCGTCTCCTCCCCCCACATGCCCAAC-CTGATCAGCTCCCGCACCAGGTGGGGGTTG 204190 || || | || |||||| |||| | ||| | || || ||| ||| || |||| Sbjct 221232 TCTTCATGTCAAGATCCCACAAACCCATCGCTG-TTAGATCTTGCAGCAGATGATGGTTC 221290 Query 204191 ATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCG 204250 | | ||| || || || || ||||| | |||| || | | ||| ||| | || ||| Sbjct 221291 ACCACCTGGAACTCGCCCGATAGCACACGTCGGTTGTAAACGTTCGACGTGTACGGCTCG 221350 Query 204251 AACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGC 204310 || | ||| |||||||| || || || || || || || ||||| || ||||| || Sbjct 221351 AAGGACTCATTGTTGCCCAATATTTGTGCCGTCGAAGCTGTCGGCATCGGTGCCAGCAGT 221410 Query 204311 AGGGAGTTGCGCACACCGT 204329 || ||||| || | ||||| Sbjct 221411 AGCGAGTTACGAATACCGT 221429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795141364299520