Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28]
1,392 sequences; 225,223,604 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq672 163 7e-35
seq949 125 2e-23
seq575 120 7e-22
>seq672
Length=1102954
Score = 163 bits (180), Expect = 7e-35
Identities = 167/218 (77%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||||| ||| || || || || || || ||||| || | ||||||||| | || |||
Sbjct 391583 CGAAGTCGCAGCACCAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCCGACAGAGTG 391642
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| ||||| ||||||||||| ||||||||||||||||||||||| || || |||||||
Sbjct 391643 CGGCCATCCTCCAGCTGCTTACCGGCGAAGATGAGACGCTGCTGATCTGGGGGAATTCCT 391702
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| |||||||||||| |||||| ||||| ||||| | | || || || |
Sbjct 391703 TCCTTATCCTGAATCTTTGCCTTCACATTTTCGATCGTGTCCGAAGGCTCGACCTCAAGT 391762
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| ||||| || ||||| |||||||| ||||| ||
Sbjct 391763 GTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTG 391800
>seq949
Length=1771395
Score = 125 bits (138), Expect = 2e-23
Identities = 159/218 (73%), Gaps = 3/218 (1%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| || ||||||||||| ||||| || | |||||||| | || || | ||||||
Sbjct 446685 AGGACCAGATGGAGAGTCGATTCCTTCTGAATATTGTAGTCCGACAGCGTACGGCCATCT 446744
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|||| |||||| || || ||||| ||||||||||| || || ||||| || |||
Sbjct 446745 TCCAACTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTGGTGGGATTCCCTCCTTATCC 446804
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|||||||| ||| || |||| ||| || | || || || |||| |||||||||
Sbjct 446805 TGAATCTTGGCCTTAACATTCTCGATGGTATCGGATGGCTCAACCTCCAGGGTGATCGTC 446864
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635
|| || || ||||| || || || || || ||||||
Sbjct 446865 TTTCCAGTTAGAGTCTTGACGAAGATCTG---CATTTT 446899
>seq575
Length=281738
Score = 120 bits (132), Expect = 7e-22
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| || || || || ||||||||||| || | ||| ||||||| || || | ||||||
Sbjct 24157 AGCACCAGATGAAGGGTCGACTCCTTCTGAATGTTATAGTCAGACAGTGTGCGTCCATCC 24098
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
||||||||||| ||||||||||| | ||||||||| ||||| || || || |||
Sbjct 24097 TCCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCCGGCGGGATGCCCTCCTTATCC 24038
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| |||||| |||| || || | | || || || | || || |||
Sbjct 24037 TGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATAGTC 23978
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||||||||| ||||| || || || ||
Sbjct 23977 TTACCCGTGAGGGTTTTGACGAAGATCTG 23949
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178900573933264
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |