Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq335 120 2e-21 seq506 100 2e-15 seq451 100 2e-15 >seq335 Length=1493947 Score = 120 bits (132), Expect = 2e-21 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 518503 ACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTT 518562 |||||| | || || ||||| || || || ||||| || || || ||| | || | || Sbjct 63514 ACCAATCAGACGCTTGGCATCGAAGATCGTGTTGGTCGGGTTCATGGCAACCTGGTTCTT 63573 Query 518563 GGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCG 518622 ||| ||||| ||||||||| | || || || || || | ||||| ||||| || || || Sbjct 63574 GGCAGCATCGCCAATCAGACGCTCCGTGTCAGTGAAGGCCACATACGATGGCGTGGTTCG 63633 Query 518623 ATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACT 518682 ||||| || ||||| || || ||||| |||||||| | || | || || ||||| || Sbjct 63634 GTTACCCTGGTCATTGGCGATGATTTCTACTTTACCGTGCTGGAAAACTCCGACACAGCT 63693 Query 518683 AAAAGTTGTTCCTAAATCAATACCAA 518708 | || || || | ||||||||||| Sbjct 63694 GTAGGTCGTGCCCAGATCAATACCAA 63719 >seq506 Length=1292245 Score = 100 bits (110), Expect = 2e-15 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 870812 TCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACATTTAAGATCAACTATTATTGGT 870871 || || || ||| | || |||||||||||| |||| |||||| | || || || |||||| Sbjct 1076242 TCGTCGCCCAATGTGGCGAAAGAAATGCATGTTGGCCATTTACGTTCGACCATAATTGGT 1076301 Query 870872 GAATCTATTTGTAGGGTATTAGAAATGTGTGGACACGATGTTTATCGTATTAATCATGTG 870931 || || |||||| | | | ||| | ||| || ||||| | || || || || | Sbjct 1076302 GATTCGATTTGTCGTTTCCTGGAATTTGTTGGCCATGATGTATTGCGCATAAACCACATC 1076361 Query 870932 GGTGATTGGGGAACTCAATTCGGTATGTTAATTGC 870966 ||||| |||||||| || ||||| ||||||||||| Sbjct 1076362 GGTGACTGGGGAACGCAGTTCGGCATGTTAATTGC 1076396 >seq451 Length=710502 Score = 100 bits (110), Expect = 2e-15 Identities = 298/458 (65%), Gaps = 4/458 (1%) Strand=Plus/Minus Query 517851 AATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTG 517910 |||| || || ||||||| ||||||| ||||| | | || ||||| | || |||| Sbjct 407741 AATCGATACCCTCGAACAGGGAATCAATCTCAATGCTTGCCTGGGTCGATGCGGACAGTG 407682 Query 517911 CACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCA 517970 ||| || || || || || || || | | | || || || ||| ||| | Sbjct 407681 TACGCTTTGCTCGCTCGCAAGCCGTACGCAACCGGCGCAACGCAC--GCTTGTTGCTCGT 407624 Query 517971 AATCTGTTTTATAT--TTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATC 518028 ||| | || | | || | ||| || ||||| ||| | | || | ||||| || Sbjct 407623 AATGTCCTTCTTGTGCTTGCGCTTAAACTCTTCGACAAAGTGGGACACCATGCGATTGTC 407564 Query 518029 AAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATC 518088 ||| || || || |||| | ||||| || | ||| | | |||| |||| ||||| Sbjct 407563 AAAGTCCTCCCCACCCAGGTGAGTATCGCCAGCCGTTGACTTAACTTCAAAAATGCCATC 407504 Query 518089 TTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT 518148 |||| | | | | |||||| || |||||||| | ||| || || |||||||| Sbjct 407503 CTCAATGGTAAGGATCGATACATCGAACGTACCACCACCAAGATCGAAGATCAGTACATT 407444 Query 518149 CATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATT 518208 || | || || || || || ||||||| || || || || ||||| || Sbjct 407443 ACGCTCGCCGGAACCCTTCTTGTCCAGCCCGTACGCAATGGCCGCTGCCGTCGGTTCGTT 407384 Query 518209 AATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTG 518268 ||| || | || ||||| | ||| || || || |||||||||||||| || | ||| Sbjct 407383 AATGATGCGCAGCACATTCAAACCGGCGATCGCACCAGCATCTTTAGTGGCCTGACGTTG 407324 Query 518269 TGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 518306 |||||||| || || || || || || || || |||| Sbjct 407323 CGAATCGTTGAAGTACGCTGGGACCGTGATGACTGCAT 407286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780753324374752