Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1171 105 8e-18 seq628 98.7 1e-15 seq574 87.8 2e-12 >seq1171 Length=2124680 Score = 105 bits (116), Expect = 8e-18 Identities = 278/416 (67%), Gaps = 10/416 (2%) Strand=Plus/Plus Query 15878 GATCTTACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATT 15937 ||||| |||||| ||||| || || || | || || | || ||||| ||||| || || Sbjct 1105543 GATCTGACGATCGAAGCGTCCCGGTCGTAACAGTGCCTTGTCGAGGATGTCAACACGGTT 1105602 Query 15938 CGTTGCGGCGATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAG 15997 ||| ||||| | || || | | ||| | | ||| ||||||||||| ||| || Sbjct 1105603 CGTCGCGGCCAGCACTACCACATTGGTTGTAGTGTTAAATCCATCCATCTCCACCAACAG 1105662 Query 15998 CTGGTTAATAGTTTGTTCCCGTTCATCATT--CGCTG--GCATACCACCAGCACTGCGTT 16053 || |||| || | ||| | || || ||| | || | ||| ||| || || Sbjct 1105663 TTGATTAAGGGTATTTTCTTGCTCCGAATGTCCGCCGAAGCTTTTG-CCACCAC-GCTTT 1105720 Query 16054 GCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGA 16113 | || |||||||| || || || ||||| | ||||| ||| |||| ||| || | Sbjct 1105721 CGT--CCAACGGCATCGATTTCGTCGATGAATAGAATGCACGGTGCGTTTTTGCGTGCCA 1105778 Query 16114 CTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG 16173 | |||| | || ||||||||| | || |||||||||||||| |||| ||| | | Sbjct 1105779 TTGCAAACATGTCGCGTACACGCGACGGTCCTACACCAACAAACATTTCCAAAAACTCCG 1105838 Query 16174 CGGCGGA-ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGA 16232 |||| || | |||||||| || || | |||||| ||| | || ||||| | Sbjct 1105839 AACCGGACACGGT-AATGAAGGGTACGTTTGCTTCACCGGCAGTTGCCTTTGCGAGCAAC 1105897 Query 16233 GTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 16288 || || |||||||||||| |||| | | ||| ||| ||||| || || || Sbjct 1105898 GTTTTGCCCGTACCTGGCGGGCCCGTTAACATGGCGCCTTTGGGAATTTTTGCTCC 1105953 >seq628 Length=1452984 Score = 98.7 bits (108), Expect = 1e-15 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 102173 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 102232 ||||| ||||| || |||| ||||| ||| || |||||||||||| ||| ||| Sbjct 708347 CTTTGGCGAGCGTGTCGTCGCGTTTGCTGCTGTCGAAGGTATCTTCTTCAGCGGTAGCTT 708288 Query 102233 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 102292 ||| |||| ||||| |||||||| || || ||||| || || |||||| ||||| Sbjct 708287 TGCCGCCATTTTCTGGCTGAAGAAGCGTGGACTGATGCCGGGACTTACCTTCTCGAACGA 708228 Query 102293 GCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 ||| || || ||||| || ||||| ||| || ||||| Sbjct 708227 GCTGATTTCGCGTGATGAAGGACTACACTGTGACTTTGC 708189 >seq574 Length=269012 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 175994 GTAAAGATATACCTCGTTTGAGACGC-ATCCTTACCACCCATGAGACGCGTACCAAACTG 176052 || ||||||||||| | || ||| |||||| || ||| | | |||||||||||||| Sbjct 37960 GTGAAGATATACCTGGGGCTAG-CGCTATCCTTTCCGCCCGTCAAGCGCGTACCAAACTG 38018 Query 176053 ACCACACGGCTCAAGAAGATTGATATTGTTTGAACCCATGTAGTCATTCGCCAACTTGAC 176112 ||| | || | || |||||||| || || || | ||||| | ||||| || || Sbjct 38019 ACCGCCAGGATAGAGCAGATTGATGTTATTGCTTCCGACGTAGTTCTGTGCCAAATTTAC 38078 Query 176113 AATCGTGTCCGCG-AGAGAGACT--TCACCGTGGTGGTACGCACTCTTCTCTGCGACAAA 176169 ||||| || | | || || | ||||| || ||||| || ||||| ||||| | Sbjct 38079 GATCGT---CGAGCAAAGCGATTGCTCACCATGATGGTAAGCGGATTTCTCCGCGACCGA 38135 Query 176170 TGCCGCCAACTGCGCCACTTTCATCTCATCCTTG 176203 | |||||||||||||| |||| |||| |||| Sbjct 38136 ACCTGCCAACTGCGCCACCTTCACCTCACGCTTG 38169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620731599082240