Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq872 98.7 1e-15 >seq872 Length=887634 Score = 98.7 bits (108), Expect = 1e-15 Identities = 664/1053 (63%), Gaps = 27/1053 (3%) Strand=Plus/Plus Query 109407 GCGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGA 109466 ||| || || ||||| ||||| || || || |||||| ||||| | ||| || || | Sbjct 220981 GCGCAGGTAGTACATGCCCGTCTTTAGTCCCATCTTCCACGCGTAGAAATGGATCGACGT 221040 Query 109467 GAGTTTGGAA-AGTGTCGGACTCT-CCATAAACAAGTTCATCGACTGAGACTGATCGATG 109524 || ||| | ||| |||| ||| ||| | ||| | || || ||||||||||| Sbjct 221041 CAGCTTGCCATAGT-TCGG-CTCGGCCACGTGTATGTTAAATGATTGTGACTGATCGATA 221098 Query 109525 AATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTA-ATTTCCCAGACAGT 109583 || || ||||| |||||||| | |||| | ||| | | || ||||| || || Sbjct 221099 AACGCTCCCCGATCGGCCGCCATTTTGATGG-ATGTTTTCACCGAGATCTCCCATACCGT 221157 Query 109584 CTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGC 109643 |||||||| | ||| || | || || | ||||||||||| || || Sbjct 221158 CTTGTACAGGTCGCGGATTTCCTTTGGTATTGATTCAATGTTTTGAATCGATCCGTTGTT 221217 Query 109644 CTTCACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTCAAC 109703 || ||| | |||||| || ||| | ||| | | | | ||||| | | Sbjct 221218 GGACAAGATGTTGTTCTTCATGTCAAGATCCCACAAACCCATCGCTGTTAGATCTTGCAG 221277 Query 109704 AAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGT 109763 ||||| | ||| ||||| || || || | || |||||| ||| | ||| | Sbjct 221278 CAGATGATGGTTCACCACCTGGAACTCGCCCGATAGCACACGTCGGTTGTAAACGTTCGA 221337 Query 109764 CGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCAT 109823 |||||| || ||||| ||||||||||||| | |||||||| || |||||||| ||||| Sbjct 221338 CGTGTACGGCTCGAAGGACTCATTGTTGCCCAATATTTGTGCCGTCGAAGCTGTCGGCAT 221397 Query 109824 GGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATTGCGTC 109883 || |||| || || ||| || | ||| | | | | | ||| || | Sbjct 221398 CGGTGCCAGCAGTAGCGAGTTACGAATACCGTGCTTTGCAATCTTCTCCTTCAACTCTGT 221457 Query 109884 CCAATCATAACGACCACTAAATT--TAGTCTCACCATCCCACATATCTGGTTGAAGTACA 109941 ||| | |||| | || | | || | |||||| || || || ||| Sbjct 221458 CCAGTT-------CCAC-AGATCCGTCGGTTCTTTGTTCCACATTTCGTACTGTAGGACA 221509 Query 109942 CCCTCAGCAGCAGGAGAACCCTTGAAAC-TCTCGTACGACCCCTCAACCTCGGCCAACTC 110000 |||| | ||| |||| || | || ||||||| | || || | ||||| || Sbjct 221510 CCCTTGCTCACTGGACAACC-TTCATACGTCTCGTATGGACCGTCCCGTGCAGCCAATTC 221568 Query 110001 GGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGAGGCG 110060 | | || || ||||| ||| || || || ||||| || || ||||| | Sbjct 221569 GCAGCTTGCTTCCAGTGCTCCATAGTAGATGGTTTCAAATATTTGTTGATTCAGCTTTTG 221628 Query 110061 AGACTCTTCACAGTCGAAGGGA-AGACCACAAAGAATAAACACATCCGCTAGACCCTGAA 110119 | |||||| | ||| | ||| || || || ||| ||| |||| || | ||||| | Sbjct 221629 GGCCTCTTCGCTTTCGTATGGATAGCGCATTAA-AATGAACGCATCGGCCATGCCCTGCA 221687 Query 110120 CACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAA 110179 |||||| ||| ||||| | || |||||| || || || || || || Sbjct 221688 CACCGATACCGATGGGCCTGTGGCGCATGTTGGAACGCTTCGCCTCCGGCACCGGATAGT 221747 Query 110180 AGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTT 110239 |||| |||||||| || ||||| || || |||| | || || | || | Sbjct 221748 AGTTTATGTCGATGATTTTGTTCAGATTGCGTGTTACTATCTTGGCGACATCCTTCAGCT 221807 Query 110240 TGTCGTAATCGAACGT--TTTCGTCTCCTTATTGACATATTTGGGGAGAGCAATAGACGC 110297 | || ||||| |||| | ||| | ||| |||| || || || || || || Sbjct 221808 TTACGAAATCGTACGTCCTATCGGATT-TTACGAACATGTTC----AGTGCGATCGAGGC 221862 Query 110298 AAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACACAAGTT 110357 |||||||| || | | | || || || | ||| |||| ||| || || |||||||| Sbjct 221863 CAGATTGCAAACCGCAATTTCATCCTTCGACGAGTACTCCACAATCTCAGTGCACAAGTT 221922 Query 110358 GGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATA 110417 |||| ||||||| || | ||||| ||| || |||| ||||||||||||||| || Sbjct 221923 AGAACACTTAATGGTGCCAATGTTCTGCTGGTTGCTTTTGCGGTTGCATGCATCCTTGTA 221982 Query 110418 GAGCATGTATGGGGTACCAGTTTCCGTCTGTGA 110450 ||||| || || || |||||| ||| || Sbjct 221983 CAGCATATACGGTACGCCCGTTTCCACCTGCGA 222015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588965751817600