Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq872 176 5e-39 seq1171 111 2e-19 seq628 82.4 9e-11 >seq872 Length=887634 Score = 176 bits (194), Expect = 5e-39 Identities = 881/1381 (64%), Gaps = 38/1381 (3%) Strand=Plus/Plus Query 105940 GTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGT 105999 ||||| |||||| || || ||| | ||||| || ||||| |||||||| || || ||||| Sbjct 221332 GTTCGACGTGTACGGCTCGAAGGACTCATTGTTGCCCAATATTTGTGCCGTCGAAGCTGT 221391 Query 106000 TGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTG--ATGCGTTCCTTG 106057 ||||| ||||||| || || |||||||| ||| | | ||| || ||||| Sbjct 221392 CGGCATCGGTGCCAGCAGTAGCGAGTTACGAATACCGTGCT--TTGCAATCTTCTCCTTC 221449 Query 106058 AGAACATCCCAGT--CGTAGTTGAGCTTGGTTTCACCTTCCCACATATCAAATTGAAGCA 106115 | | ||||| | || | | | | ||| | |||||| || | || || | Sbjct 221450 AACTCTGTCCAGTTCCACAGATCCG--TCGGTTCTTTGTTCCACATTTCGTACTGTAGGA 221507 Query 106116 CCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATT 106175 | || | | | ||| |||| ||| | ||||| || | ||| | | ||||||||| Sbjct 221508 CACCCTTGCTCACTGGACAACCTTCATACGTCTCGTATGGACCGTCCCGTGCAGCCAATT 221567 Query 106176 CACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCT 106235 | ||||| || ||||| | | | | || ||||||||||| || | ||||| || | Sbjct 221568 CGCAGCTTGCTTCCAGTGCTCCATAGTAGATGGTTTCAAATATTTGTTGATTCAGCTTTT 221627 Query 106236 TGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAA 106295 ||| || || || ||| ||||| ||||| || |||| || | || || | Sbjct 221628 GGGCCTCTTCGCTTTCGTATGGATAGCGCATTAAAATGAACGCATCGGCCATGCCCTGCA 221687 Query 106296 CACCCAAACCAATAGGTCTGTGTCGCATATTAGACT--TTCGCG-CAGTCTCAACGGGAT 106352 |||| | ||| || || ||||| ||||| || || ||||| | | | || |||| Sbjct 221688 CACCGATACCGATGGGCCTGTGGCGCATGTTGGAACGCTTCGCCTCCGGC---ACCGGAT 221744 Query 106353 AAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAA 106412 | | ||| |||| |||| | ||| ||||| || || ||||| | || || | | Sbjct 221745 AGTAGTTTATGTCGATGATTTTGTTCAGATTGCGTGTTACTATCTTGGCGACATCCTTCA 221804 Query 106413 GTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATG 106472 | ||| | |||| | || | | || || || || | || ||||| || | Sbjct 221805 GCTTTACGAAATCGTACGTCCTA---TCGGATTTTACGAACATGTTCAGTGCGATCGAGG 221861 Query 106473 CCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGT 106532 ||| ||||||||| || | |||||||| | |||||| | ||| || || ||||||| Sbjct 221862 CCAGATTGCAAACCGCAATTTCATCCTTCGACGAGTACTCCACAATCTCAGTGCACAAGT 221921 Query 106533 TGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGT 106592 | |||| |||||| || || | |||| ||||| || || |||||| |||||||||| Sbjct 221922 TAGAACACTTAATGGTGCCAATGTTCTGCTGGTTGCTTTTGCGGTTGCATGCATCCTTGT 221981 Query 106593 AGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACATCGG 106652 | ||||| || || ||||| ||| ||| || | | || || ||||| ||| Sbjct 221982 ACAGCATATACGGTACGCCCGTTTCCACCTGCGATTCAATGATCGCGAACCACAAATCCT 222041 Query 106653 CGGCTGGTACAATGGCG-TTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCA 106711 || || ||||| | || ||||| |||||| ||||| || || || Sbjct 222042 GTGCCTTCAC-CTGGCGAATAAAACGACCCTCTTTCTCGTAGCCAGTGTACAGTGCCTCG 222100 Query 106712 AACTCCTCACCCACCGC-GTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCA 106770 |||| |||||| | || || || | ||| || | || || || | ||| ||| Sbjct 222101 AACTTTTCACCC-CAGCTATCAGACAAACCGGGACAATCGTGAGGGCACATTAGACTCCA 222159 Query 106771 TTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAG 106830 | | |||| ||||||| |||||| || || |||||||||| || |||| | Sbjct 222160 CATTTCGTTCGCCTCCACCCGCTCCATGAACAGATCCGGAATCCACAAGGCGTAAAACAT 222219 Query 106831 ATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT-AACTCAAGGAACTCCATG 106888 || | | || || |||| || | || ||| || | | || || ||||| | Sbjct 222220 GTCGCGTGCA-CGCACCTCCTCTTTGCCGGTGTT-TTTCTTCAGATCCAGAAACTCGAAC 222277 Query 106889 ATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCA 106942 | ||| ||||||| || || || |||| || | || |||| | ||| ||| Sbjct 222278 ACATCACCGTGCCACGGTTCGAGGTAGATGGCAAAAGCTCCC---GGGCGCTTGTTGCCA 222334 Query 106943 GCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCT 107002 | |||| || || || || || ||| | ||||| |||||||| | | || | | Sbjct 222335 CCCTGATCCACGTATCGGGCCGTATTGTTGTACACGCGCAGCATTGGCACCAACCCGTTT 222394 Query 107003 GATTGACCATTTGT-CCCCCGA-ATACGAGATTTATTGGCTCTCACATCATGGATGTGCA 107060 || ||||| || ||| || |||| | || || | | | || | || || Sbjct 222395 GAAATTCCATTCGTGCCCGAGATGTACGTACCT--TTCGCGCGAATACAGTGCACGTTCA 222452 Query 107061 TCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATAC 107120 |||||| || ||||| | ||||| || | ||||||| | | || || | ||||||| Sbjct 222453 GCCCAATTCCGCCAGCAGATTTTGAAATCAGTGCACACTGCTTCAGCGTATCGTAGATAC 222512 Query 107121 CGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTG 107180 | | || ||| ||| ||| || | ||| || |||| |||||| | | | | Sbjct 222513 CTTCAATGCTGTCGTCCGACATGGTGAGCAAGAAACAGGACGACAACTGCGGACGTTGCG 222572 Query 107181 TACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGT 107240 || | || || | ||| |||| || || | || | | || | | | || Sbjct 222573 TAGCCGCCGCAAACATGGTCGGTGAGGCATGGGTAAAGTAGCGCTCCGAAAGCAGATTGT 222632 Query 107241 ATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACA 107300 | ||||| | | | ||| |||||||| || || |||||||| || || ||||| |||| Sbjct 222633 AAGTCTCGATTGCTGCATCGATGTCTTCACCATGAATGCCGATCGCAACGCGCATCAACA 222692 Query 107301 T 107301 | Sbjct 222693 T 222693 >seq1171 Length=2124680 Score = 111 bits (122), Expect = 2e-19 Identities = 306/461 (66%), Gaps = 10/461 (2%) Strand=Plus/Plus Query 9185 GATCTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATT 9244 ||||| |||||| ||||| || || || | || || | || ||||| ||||| || || Sbjct 1105543 GATCTGACGATCGAAGCGTCCCGGTCGTAACAGTGCCTTGTCGAGGATGTCAACACGGTT 1105602 Query 9245 CGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAG 9304 ||||||||| | || || | | ||| | | | ||| ||||||||||| ||| || Sbjct 1105603 CGTCGCGGCCAGCACTACCACATTGGTTGTAGTGTTAAATCCATCCATCTCCACCAACAG 1105662 Query 9305 TTGGTTAATAGTTTGTTCCCGTTCATCATT--CGCTG--GCATACCACCAGCACTGCGTT 9360 ||| |||| || | ||| | || || ||| | || | ||| ||| || || Sbjct 1105663 TTGATTAAGGGTATTTTCTTGCTCCGAATGTCCGCCGAAGCTTTTG-CCACCAC-GCTTT 1105720 Query 9361 GCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGA 9420 | || |||||||| || || || ||||| | ||| || ||| |||| ||| || | Sbjct 1105721 CGT--CCAACGGCATCGATTTCGTCGATGAATAGAATGCACGGTGCGTTTTTGCGTGCCA 1105778 Query 9421 TTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG 9480 || |||| | ||||| || | | || |||||||||||||| |||| ||| | | Sbjct 1105779 TTGCAAACATGTCGCGTACACGCGACGGTCCTACACCAACAAACATTTCCAAAAACTCCG 1105838 Query 9481 CGGCGGA-ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGA 9539 |||| || | |||||||| || || | |||||| ||| | || ||||| | Sbjct 1105839 AACCGGACACGGT-AATGAAGGGTACGTTTGCTTCACCGGCAGTTGCCTTTGCGAGCAAC 1105897 Query 9540 GTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCACTT 9599 || || |||||||||||| |||| | | ||| || ||||| || || || Sbjct 1105898 GTTTTGCCCGTACCTGGCGGGCCCGTTAACATGGCGCCTTTGGGAATTTTTGCTCCGAGA 1105957 Query 9600 CCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCTC 9640 | | |||| | || | |||||||||| ||||| ||| Sbjct 1105958 TCGATGTATTGTTGGGGGTTTTTGAGAAAATTCACAAACTC 1105998 >seq628 Length=1452984 Score = 82.4 bits (90), Expect = 9e-11 Identities = 114/160 (71%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332 |||||| || ||| || || ||||| || ||||| || || || |||||| || || Sbjct 708188 GGCAAAGTCACAGTGTAGTCCTTCATCACGCGAAATCAGCTCGTTCGAGAAGGTAAGTCC 708247 Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 117392 ||||| || || |||||||||| ||| |||| ||| || ||| ||||||||| Sbjct 708248 CGGCATCAGTCCACGCTTCTTCAGCCAGAAAATGGCGGCAAAGCTACCGCTGAAGAAGAT 708307 Query 117393 ACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAG 117432 ||| || ||| |||||||| | | |||||| | ||| Sbjct 708308 ACCTTCGACAGCAGCAAACGCGACGACACGCTCGCCAAAG 708347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589970534334080