Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq575 100 2e-16 seq949 95.1 8e-15 seq672 91.5 1e-13 >seq575 Length=281738 Score = 100 bits (110), Expect = 2e-16 Identities = 139/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||||||||| || || | ||| |||| |||||||| || ||||| || Sbjct 24136 TCCTTCTGAATGTTATAGTCAGACAGTGTGCGTCCATCCTCCAGCTGCTTACCGGCGAAG 24077 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | || ||||| || |||| | |||||||| || |||||| || || || Sbjct 24076 ATCAAACGCTGCTGATCCGGCGGGATGCCCTCCTTATCCTGGATCTTCGCCTTCAC--AT 24019 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || |||| || || ||| || || | ||| || || || |||||||| || || | Sbjct 24018 TCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATAGTCTTACCCGTGAGGGTTTTGA 23959 Query 34969 CAAAGATCTGCAT 34981 | ||||||||||| Sbjct 23958 CGAAGATCTGCAT 23946 >seq949 Length=1771395 Score = 95.1 bits (104), Expect = 8e-15 Identities = 141/200 (71%), Gaps = 10/200 (5%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| |||||||| || |||||||| || | || |||| |||| ||| || || ||||| Sbjct 446705 TTCCTTCTGAATATTGTAGTCCGACAGCGTACGGCCATCTTCCAACTGCTTGCCAGCAAA 446764 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACG-- 34907 || || || ||||| ||| | || | |||||||| || |||||| || || Sbjct 446765 GATCAGACGCTGCTGATCTGGTGGGATTCCCTCCTTATCCTGAATCTTGGCCTTAACATT 446824 Query 34908 ---GATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTC 34964 |||| ||||| | | |||||| || | ||| || || ||||| || |||||| Sbjct 446825 CTCGATGGTATCGGAT-----GGCTCAACCTCCAGGGTGATCGTCTTTCCAGTTAGAGTC 446879 Query 34965 TTCACAAAGATCTGCATATT 34984 || || ||||||||||| || Sbjct 446880 TTGACGAAGATCTGCATTTT 446899 >seq672 Length=1102954 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/197 (71%), Gaps = 1/197 (1%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||||||||| |||||||| || | || |||| |||||||| || ||||| || Sbjct 391612 TTCCTTCTGAATGTTGTAGTCCGACAGAGTGCGGCCATCCTCCAGCTGCTTACCGGCGAA 391671 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || ||||| ||| | || | || ||||| || |||||| || || Sbjct 391672 GATGAGACGCTGCTGATCTGGGGGAATTCCTTCCTTATCCTGAATCTTTGCCTTCACATT 391731 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | | |||| || | ||| || || | || ||||| || || ||||| || ||||| Sbjct 391732 TTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCAC 391791 Query 34970 AAAGATCTGCAT-ATTC 34985 || |||||||| |||| Sbjct 391792 GAAAATCTGCATGATTC 391808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324628092590976