Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28]
1,392 sequences; 225,223,604 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq575 100 2e-16
seq949 95.1 8e-15
seq672 91.5 1e-13
>seq575
Length=281738
Score = 100 bits (110), Expect = 2e-16
Identities = 139/193 (72%), Gaps = 4/193 (2%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||||||||||||||| || || | ||| |||| |||||||| || ||||| ||
Sbjct 24136 TCCTTCTGAATGTTATAGTCAGACAGTGTGCGTCCATCCTCCAGCTGCTTACCGGCGAAG 24077
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| | || ||||| || |||| | |||||||| || |||||| || || ||
Sbjct 24076 ATCAAACGCTGCTGATCCGGCGGGATGCCCTCCTTATCCTGGATCTTCGCCTTCAC--AT 24019
Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968
|| |||| || || ||| || || | ||| || || || |||||||| || || |
Sbjct 24018 TCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATAGTCTTACCCGTGAGGGTTTTGA 23959
Query 34969 CAAAGATCTGCAT 34981
| |||||||||||
Sbjct 23958 CGAAGATCTGCAT 23946
>seq949
Length=1771395
Score = 95.1 bits (104), Expect = 8e-15
Identities = 141/200 (71%), Gaps = 10/200 (5%)
Strand=Plus/Plus
Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849
||| |||||||| || |||||||| || | || |||| |||| ||| || || |||||
Sbjct 446705 TTCCTTCTGAATATTGTAGTCCGACAGCGTACGGCCATCTTCCAACTGCTTGCCAGCAAA 446764
Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACG-- 34907
|| || || ||||| ||| | || | |||||||| || |||||| || ||
Sbjct 446765 GATCAGACGCTGCTGATCTGGTGGGATTCCCTCCTTATCCTGAATCTTGGCCTTAACATT 446824
Query 34908 ---GATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTC 34964
|||| ||||| | | |||||| || | ||| || || ||||| || ||||||
Sbjct 446825 CTCGATGGTATCGGAT-----GGCTCAACCTCCAGGGTGATCGTCTTTCCAGTTAGAGTC 446879
Query 34965 TTCACAAAGATCTGCATATT 34984
|| || ||||||||||| ||
Sbjct 446880 TTGACGAAGATCTGCATTTT 446899
>seq672
Length=1102954
Score = 91.5 bits (100), Expect = 1e-13
Identities = 139/197 (71%), Gaps = 1/197 (1%)
Strand=Plus/Plus
Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849
||| ||||||||||| |||||||| || | || |||| |||||||| || ||||| ||
Sbjct 391612 TTCCTTCTGAATGTTGTAGTCCGACAGAGTGCGGCCATCCTCCAGCTGCTTACCGGCGAA 391671
Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909
|| || || ||||| ||| | || | || ||||| || |||||| || ||
Sbjct 391672 GATGAGACGCTGCTGATCTGGGGGAATTCCTTCCTTATCCTGAATCTTTGCCTTCACATT 391731
Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969
| | |||| || | ||| || || | || ||||| || || ||||| || |||||
Sbjct 391732 TTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCAC 391791
Query 34970 AAAGATCTGCAT-ATTC 34985
|| |||||||| ||||
Sbjct 391792 GAAAATCTGCATGATTC 391808
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324628092590976
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |