Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28]
1,392 sequences; 225,223,604 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq628 109 6e-19
>seq628
Length=1452984
Score = 109 bits (120), Expect = 6e-19
Identities = 184/264 (70%), Gaps = 2/264 (1%)
Strand=Plus/Plus
Query 18943 AGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAAT 19002
|||| |||||||||| || ||||| ||||| |||||||| || || | ||||
Sbjct 708168 AGATACTTAAACATCAGGCAGGCAAAGTCACAGTGTAGTCCTTCATCACGCGAAATCAGC 708227
Query 19003 TCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCA 19062
|| || || || || | || ||||||||||| | || || | |||||| || | |||
Sbjct 708228 TCGTTCGAGAAGGTAAGTCCCGGCATCAGTCCACGCTTCTTCAGCCAGAAAATGGCGGCA 708287
Query 19063 AATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAA 19122
|| || ||||| |||||||| || || ||||| || || | | || ||| |
Sbjct 708288 AAGCTACCGCTGAAGAAGATACCTTCGACAGCAGCAAACGCGACGACACGCTCGCCAAAG 708347
Query 19123 CTAGCATCATTATTATGA-ATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGG 19181
| || | || | ||| ||||| |||||||||||||| |||||||| || || || ||
Sbjct 708348 TTTGCCTTCTTGCT-TGAGATCCAGTTCAGTGCCCAATCGGCCTTCTTCTTCACGCACGG 708406
Query 19182 CATTGTCTCTATAGAATTAAATAG 19205
|| || || || | ||| || ||
Sbjct 708407 CAGCGTTTCAATTGCATTGAACAG 708430
Score = 89.7 bits (98), Expect = 6e-13
Identities = 166/241 (69%), Gaps = 2/241 (1%)
Strand=Plus/Plus
Query 19254 GTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTC 19313
|||||| || || | |||||| || || || ||||| ||||||||||| | |||||
Sbjct 708553 GTACATCTCGCTGTGCACATTTTCCATCGCTATTTGAAAGCCGTAAAAACAGCGAGCTTC 708612
Query 19314 TGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACT 19373
|||| |||||| || | || | |||||||| ||||| || || || |||||
Sbjct 708613 CGTTACCTGTACCTCCTGGCTGAAACGTTCGACCAGGTTTTCGTTCACGATGCCATCGGA 708672
Query 19374 AGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTT-AATGTAT 19432
|| ||||| || || | ||| || ||||| || ||| || | || || | ||
Sbjct 708673 TGCGGCAAAGAAGGCAAGTACGTGCGAGATAAAGTGGCGTTC-GCTCGGTTTCAACGAAT 708731
Query 19433 TCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTG 19492
||| || || || || || || | ||| || ||||| || ||||| || ||||| || |
Sbjct 708732 CCCAGTCTTTCATGTCCTTGGACAGATCCACCTCTTCCACGGTCCAGAACGAAGCTTCCG 708791
Query 19493 C 19493
|
Sbjct 708792 C 708792
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562099019306880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |