Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq628 109 6e-19 >seq628 Length=1452984 Score = 109 bits (120), Expect = 6e-19 Identities = 184/264 (70%), Gaps = 2/264 (1%) Strand=Plus/Plus Query 18943 AGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAAT 19002 |||| |||||||||| || ||||| ||||| |||||||| || || | |||| Sbjct 708168 AGATACTTAAACATCAGGCAGGCAAAGTCACAGTGTAGTCCTTCATCACGCGAAATCAGC 708227 Query 19003 TCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCA 19062 || || || || || | || ||||||||||| | || || | |||||| || | ||| Sbjct 708228 TCGTTCGAGAAGGTAAGTCCCGGCATCAGTCCACGCTTCTTCAGCCAGAAAATGGCGGCA 708287 Query 19063 AATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAA 19122 || || ||||| |||||||| || || ||||| || || | | || ||| | Sbjct 708288 AAGCTACCGCTGAAGAAGATACCTTCGACAGCAGCAAACGCGACGACACGCTCGCCAAAG 708347 Query 19123 CTAGCATCATTATTATGA-ATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGG 19181 | || | || | ||| ||||| |||||||||||||| |||||||| || || || || Sbjct 708348 TTTGCCTTCTTGCT-TGAGATCCAGTTCAGTGCCCAATCGGCCTTCTTCTTCACGCACGG 708406 Query 19182 CATTGTCTCTATAGAATTAAATAG 19205 || || || || | ||| || || Sbjct 708407 CAGCGTTTCAATTGCATTGAACAG 708430 Score = 89.7 bits (98), Expect = 6e-13 Identities = 166/241 (69%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 19254 GTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTC 19313 |||||| || || | |||||| || || || ||||| ||||||||||| | ||||| Sbjct 708553 GTACATCTCGCTGTGCACATTTTCCATCGCTATTTGAAAGCCGTAAAAACAGCGAGCTTC 708612 Query 19314 TGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACT 19373 |||| |||||| || | || | |||||||| ||||| || || || ||||| Sbjct 708613 CGTTACCTGTACCTCCTGGCTGAAACGTTCGACCAGGTTTTCGTTCACGATGCCATCGGA 708672 Query 19374 AGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTT-AATGTAT 19432 || ||||| || || | ||| || ||||| || ||| || | || || | || Sbjct 708673 TGCGGCAAAGAAGGCAAGTACGTGCGAGATAAAGTGGCGTTC-GCTCGGTTTCAACGAAT 708731 Query 19433 TCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTG 19492 ||| || || || || || || | ||| || ||||| || ||||| || ||||| || | Sbjct 708732 CCCAGTCTTTCATGTCCTTGGACAGATCCACCTCTTCCACGGTCCAGAACGAAGCTTCCG 708791 Query 19493 C 19493 | Sbjct 708792 C 708792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562099019306880