Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq335 123 2e-22 seq451 86.0 5e-11 >seq335 Length=1493947 Score = 123 bits (136), Expect = 2e-22 Identities = 184/258 (71%), Gaps = 6/258 (2%) Strand=Plus/Minus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 ||||| ||| | || || || || || ||||| || |||| || | |||||||| ||| Sbjct 63717 GGTATTGATCTGGGCACGACCTACAGCTGTGTCGGAGTTTTCCAGCACGGTAAAGTAGAA 63658 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 || || |||||||| || |||||| |||| || ||||| ||||| | ||||| || || Sbjct 63657 ATCATCGCCAATGACCAGGGTAACCGAACCACGCCATCGTATGTGGCCTTCACTGACACG 63598 Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCAAG---CCACTGGTAATCCTACCAATACT 550174 || | | | |||| ||||| || || | || | ||| || || || ||||| || Sbjct 63597 GAGCGTCTGATTGGCGATGCTGCCAAGAACCAGGTTGCCA-TG--AACCCGACCAACACG 63541 Query 550175 ATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGAT 550234 || || ||||| || ||| | ||||| | | ||| | ||| | | | ||||| || Sbjct 63540 ATCTTCGATGCCAAGCGTCTGATTGGTCGCAAGTTTGACGATCCCGCCATCCAGGCTGAC 63481 Query 550235 ATGAAGCATTGGCCTTTC 550252 |||||||||||||| ||| Sbjct 63480 ATGAAGCATTGGCCGTTC 63463 >seq451 Length=710502 Score = 86.0 bits (94), Expect = 5e-11 Identities = 146/209 (70%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 549976 AATGTCAAACAAAGTAGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGT 550035 |||| |||| | | ||| | ||||||||| | || || || || ||||||||||| Sbjct 406787 AATGGCAAAGACACCAGCGGTCGGTATAGATCTTGGCACGACCTACTCGTGTGTTGGTGT 406846 Query 550036 TTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATC 550095 | || | || || || || || ||||| |||||||| || ||| | ||||| || || Sbjct 406847 GTTCCAGCACGGCAAGGTGGACATCATTGCTAATGATCAGGGCAACCGGACTACCCCCTC 406906 Query 550096 TTATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCA---AGC 550152 ||||| | ||||| || | |||| || |||| ||||| || || |||| || Sbjct 406907 CTATGTGGCATTCACCGATTCGGAACGGTTGATTGGGGATGCTGCCAAGAATCAGGTGGC 406966 Query 550153 CACTGGTAATCCTACCAATACTATTTTTG 550181 || || ||||| | ||| || ||||||| Sbjct 406967 CA-TG--AATCCAAACAACACCATTTTTG 406992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029222384762080