Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28]
1,392 sequences; 225,223,604 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq335 123 2e-22
seq451 86.0 5e-11
>seq335
Length=1493947
Score = 123 bits (136), Expect = 2e-22
Identities = 184/258 (71%), Gaps = 6/258 (2%)
Strand=Plus/Minus
Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057
||||| ||| | || || || || || ||||| || |||| || | |||||||| |||
Sbjct 63717 GGTATTGATCTGGGCACGACCTACAGCTGTGTCGGAGTTTTCCAGCACGGTAAAGTAGAA 63658
Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117
|| || |||||||| || |||||| |||| || ||||| ||||| | ||||| || ||
Sbjct 63657 ATCATCGCCAATGACCAGGGTAACCGAACCACGCCATCGTATGTGGCCTTCACTGACACG 63598
Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCAAG---CCACTGGTAATCCTACCAATACT 550174
|| | | | |||| ||||| || || | || | ||| || || || ||||| ||
Sbjct 63597 GAGCGTCTGATTGGCGATGCTGCCAAGAACCAGGTTGCCA-TG--AACCCGACCAACACG 63541
Query 550175 ATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGAT 550234
|| || ||||| || ||| | ||||| | | ||| | ||| | | | ||||| ||
Sbjct 63540 ATCTTCGATGCCAAGCGTCTGATTGGTCGCAAGTTTGACGATCCCGCCATCCAGGCTGAC 63481
Query 550235 ATGAAGCATTGGCCTTTC 550252
|||||||||||||| |||
Sbjct 63480 ATGAAGCATTGGCCGTTC 63463
>seq451
Length=710502
Score = 86.0 bits (94), Expect = 5e-11
Identities = 146/209 (70%), Gaps = 6/209 (3%)
Strand=Plus/Plus
Query 549976 AATGTCAAACAAAGTAGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGT 550035
|||| |||| | | ||| | ||||||||| | || || || || |||||||||||
Sbjct 406787 AATGGCAAAGACACCAGCGGTCGGTATAGATCTTGGCACGACCTACTCGTGTGTTGGTGT 406846
Query 550036 TTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATC 550095
| || | || || || || || ||||| |||||||| || ||| | ||||| || ||
Sbjct 406847 GTTCCAGCACGGCAAGGTGGACATCATTGCTAATGATCAGGGCAACCGGACTACCCCCTC 406906
Query 550096 TTATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCA---AGC 550152
||||| | ||||| || | |||| || |||| ||||| || || |||| ||
Sbjct 406907 CTATGTGGCATTCACCGATTCGGAACGGTTGATTGGGGATGCTGCCAAGAATCAGGTGGC 406966
Query 550153 CACTGGTAATCCTACCAATACTATTTTTG 550181
|| || ||||| | ||| || |||||||
Sbjct 406967 CA-TG--AATCCAAACAACACCATTTTTG 406992
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4029222384762080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |