Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28]
1,392 sequences; 225,223,604 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq672 141 7e-29
seq628 129 5e-25
seq575 95.1 1e-14
>seq672
Length=1102954
Score = 141 bits (156), Expect = 7e-29
Identities = 156/208 (75%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325
||||||||||||||| || || || ||||| || | | ||| | | |||| |||| ||
Sbjct 391600 ATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCCGACAGAGTGCGGCCATCCTCCAGCTG 391659
Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385
|||||| || || || | |||||| ||||| || ||||| ||||| ||||| ||||| ||
Sbjct 391660 CTTACCGGCGAAGATGAGACGCTGCTGATCTGGGGGAATTCCTTCCTTATCCTGAATCTT 391719
Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445
| || ||| |||| | ||||| || | || || ||||| |||| || ||||||||
Sbjct 391720 TGCCTTCACATTTTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTGATGGTCTTGCCGGT 391779
Query 101446 TAAAGTTTTTACAAATATCTGCATGGTT 101473
| ||||| || || ||||||||| ||
Sbjct 391780 GAGTGTTTTCACGAAAATCTGCATGATT 391807
>seq628
Length=1452984
Score = 129 bits (142), Expect = 5e-25
Identities = 217/305 (71%), Gaps = 8/305 (3%)
Strand=Plus/Minus
Query 13652 TTGAATTTTCGTTTACAACCTTCAAAATTCATGTGTCGTATTTTACCATAGATTGGTCGC 13711
|| ||||| || || || |||||| | ||||||| | ||||| || | ||| |||
Sbjct 270819 TTAAATTTACGCTTGCATCCTTCATAGTTCATGTACCTAATTTTGCCGAAAATTTCACGC 270760
Query 13712 TCCATCCAGGCACGATCGTGAGTTCC-GCATATTGACCACATGCAACCGGCATAACCGTT 13770
||| |||| | |||||||| | || ||| || ||||||||||||||| | ||||||||
Sbjct 270759 TCCTTCCATCCCTGATCGTGAATGCCCGCA-ATCGACCACATGCAACCGACGTAACCGTT 270701
Query 13771 GGGATCGCGTCCATCCAAACTGTATTTGTCGTTGAAATATATGG-CGTTGATTAA-AGCC 13828
|||||||||||||||| |||||| ||||| | ||| |||| |||| | || ||
Sbjct 270700 CGGATCGCGTCCATCCAGACTGTACCGATCGTTCAGATAGATGGCCGTT--TCAAGCGCT 270643
Query 13829 ACTGTAGGCGAAATAGACCATTCTAATAtttttttAGCCCAATATATTCTCATATATCCG 13888
| |||| | | ||| || | ||| ||||| ||||| || || || | | | |||
Sbjct 270642 TCCTCGGGCGTTTTTGTCCACTCGAGTATCTTTTTGGCCCAGTACATCCTTAGAAAGCCG 270583
Query 13889 TGCATTTTGCCTTGCGTTTTAAGCTGTGTCTGAGCAGCGTTCCACAATAT-GTCATGAGT 13947
|||||||| || | | || | ||| ||| || | |||||| || || ||| || ||
Sbjct 270582 TGCATTTTACCCTCCTTTACCATCTGCAGCTGGGCCGAGTTCCA-AAGATCGTCGTGCGT 270524
Query 13948 TTCGG 13952
|| ||
Sbjct 270523 TTTGG 270519
>seq575
Length=281738
Score = 95.1 bits (104), Expect = 1e-14
Identities = 145/207 (70%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325
||||||||| || || || || || || || || | | || | |||| |||| ||
Sbjct 24149 ATGAAGGGTCGACTCCTTCTGAATGTTATAGTCAGACAGTGTGCGTCCATCCTCCAGCTG 24090
Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385
|||||| || || ||||||||||| ||||| ||||| ||||| || ||||| || || ||
Sbjct 24089 CTTACCGGCGAAGATCAAACGCTGCTGATCCGGCGGGATGCCCTCCTTATCCTGGATCTT 24030
Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445
|| ||| | || | || || || | || || ||||| || | || || || ||
Sbjct 24029 CGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATAGTCTTACCCGT 23970
Query 101446 TAAAGTTTTTACAAATATCTGCATGGT 101472
| ||||| || || |||||||| ||
Sbjct 23969 GAGGGTTTTGACGAAGATCTGCATCGT 23943
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396271677136944
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |