Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq672 141 7e-29 seq628 129 5e-25 seq575 95.1 1e-14 >seq672 Length=1102954 Score = 141 bits (156), Expect = 7e-29 Identities = 156/208 (75%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||||||||||||||| || || || ||||| || | | ||| | | |||| |||| || Sbjct 391600 ATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCCGACAGAGTGCGGCCATCCTCCAGCTG 391659 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 |||||| || || || | |||||| ||||| || ||||| ||||| ||||| ||||| || Sbjct 391660 CTTACCGGCGAAGATGAGACGCTGCTGATCTGGGGGAATTCCTTCCTTATCCTGAATCTT 391719 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 | || ||| |||| | ||||| || | || || ||||| |||| || |||||||| Sbjct 391720 TGCCTTCACATTTTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTGATGGTCTTGCCGGT 391779 Query 101446 TAAAGTTTTTACAAATATCTGCATGGTT 101473 | ||||| || || ||||||||| || Sbjct 391780 GAGTGTTTTCACGAAAATCTGCATGATT 391807 >seq628 Length=1452984 Score = 129 bits (142), Expect = 5e-25 Identities = 217/305 (71%), Gaps = 8/305 (3%) Strand=Plus/Minus Query 13652 TTGAATTTTCGTTTACAACCTTCAAAATTCATGTGTCGTATTTTACCATAGATTGGTCGC 13711 || ||||| || || || |||||| | ||||||| | ||||| || | ||| ||| Sbjct 270819 TTAAATTTACGCTTGCATCCTTCATAGTTCATGTACCTAATTTTGCCGAAAATTTCACGC 270760 Query 13712 TCCATCCAGGCACGATCGTGAGTTCC-GCATATTGACCACATGCAACCGGCATAACCGTT 13770 ||| |||| | |||||||| | || ||| || ||||||||||||||| | |||||||| Sbjct 270759 TCCTTCCATCCCTGATCGTGAATGCCCGCA-ATCGACCACATGCAACCGACGTAACCGTT 270701 Query 13771 GGGATCGCGTCCATCCAAACTGTATTTGTCGTTGAAATATATGG-CGTTGATTAA-AGCC 13828 |||||||||||||||| |||||| ||||| | ||| |||| |||| | || || Sbjct 270700 CGGATCGCGTCCATCCAGACTGTACCGATCGTTCAGATAGATGGCCGTT--TCAAGCGCT 270643 Query 13829 ACTGTAGGCGAAATAGACCATTCTAATAtttttttAGCCCAATATATTCTCATATATCCG 13888 | |||| | | ||| || | ||| ||||| ||||| || || || | | | ||| Sbjct 270642 TCCTCGGGCGTTTTTGTCCACTCGAGTATCTTTTTGGCCCAGTACATCCTTAGAAAGCCG 270583 Query 13889 TGCATTTTGCCTTGCGTTTTAAGCTGTGTCTGAGCAGCGTTCCACAATAT-GTCATGAGT 13947 |||||||| || | | || | ||| ||| || | |||||| || || ||| || || Sbjct 270582 TGCATTTTACCCTCCTTTACCATCTGCAGCTGGGCCGAGTTCCA-AAGATCGTCGTGCGT 270524 Query 13948 TTCGG 13952 || || Sbjct 270523 TTTGG 270519 >seq575 Length=281738 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||||||||| || || || || || || || || | | || | |||| |||| || Sbjct 24149 ATGAAGGGTCGACTCCTTCTGAATGTTATAGTCAGACAGTGTGCGTCCATCCTCCAGCTG 24090 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 |||||| || || ||||||||||| ||||| ||||| ||||| || ||||| || || || Sbjct 24089 CTTACCGGCGAAGATCAAACGCTGCTGATCCGGCGGGATGCCCTCCTTATCCTGGATCTT 24030 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || ||| | || | || || || | || || ||||| || | || || || || Sbjct 24029 CGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATAGTCTTACCCGT 23970 Query 101446 TAAAGTTTTTACAAATATCTGCATGGT 101472 | ||||| || || |||||||| || Sbjct 23969 GAGGGTTTTGACGAAGATCTGCATCGT 23943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396271677136944