Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_018874.1 Length=211518 Score E Sequences producing significant alignments: (Bits) Value seq336 131 2e-25 >seq336 Length=532411 Score = 131 bits (144), Expect = 2e-25 Identities = 190/264 (72%), Gaps = 6/264 (2%) Strand=Plus/Plus Query 197022 CAGATCCTCGTCGCTAAAGCCCGTACCGATCTTACAAATGGATTCGTACATCTGGTTGTC 197081 |||||| || ||| ||| |||||||||||||| || || | | ||| | ||| || Sbjct 386725 CAGATCTTCATCGGAAAATCCCGTACCGATCTTGCAGATCGTCTGATACTCTTCGTTCTC 386784 Query 197082 GGGATTGTAACAGGCGAGTAAGAAAGCGCCGTAGGTTCCCGTTCTCTTTC--CCACCCCG 197139 | | ||| |||||||| | |||| ||||||| ||||| || | ||||| | ||||| Sbjct 386785 GTCGTCGTAGCAGGCGAGCAGGAAACCGCCGTACGTTCCGGTACGCTTTCCGCGTCCCCG 386844 Query 197140 TTGAAGCCTCCGATAACCACCAGATCCAGAGTGTCGCACACCCCTTCCATGTAATCTTTC 197199 | | || ||||| || |||| ||| || | |||| |||||| || || || ||| Sbjct 386845 AT--AACCACCGATTACAACCAAATCGAGCGAATCGCCCACCCCGGTCAGATAGTCCTTC 386902 Query 197200 TTCAGTTTGAGCCAGCTTCTAGATCTCTTGGCAATCTCGTAGGTTGCGTTTACGT-CCAG 197258 ||||| || | ||| | | |||| || || || ||||| |||||| | |||| |||| Sbjct 386903 TTCAGCTTCAACCAATTGCGCGATCGTTTCGCGATTTCGTACGTTGCG-TCACGTGCCAG 386961 Query 197259 GGTCTTGATCATCAATCCCTCGCA 197282 ||||| | ||||| ||||||||| Sbjct 386962 CGTCTTCACCATCAGTCCCTCGCA 386985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 676717824904960