Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28]
1,392 sequences; 225,223,604 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq561 113 3e-20
seq575 98.7 8e-16
seq949 96.9 3e-15
seq672 96.9 3e-15
>seq561
Length=1311501
Score = 113 bits (124), Expect = 3e-20
Identities = 178/253 (70%), Gaps = 8/253 (3%)
Strand=Plus/Minus
Query 8991 TTAATTAGTACCGGTTGACCCAAACCCTCCCTCTCCGCGATTGGTGTCAGT---CGT-GG 9046
|||||| |||||||| || ||||| ||||| | || || | ||||| || ||| ||
Sbjct 776060 TTAATTCGTACCGGTAGATCCAAAACCTCCTGCACCTCGTTCTGTGTCCGTAAGCGTCGG 776001
Query 9047 AAGTAACCTCTACCAGTGTGGGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGT 9106
||| |||| ||| ||||| |||| || ||||| || || || || | |
Sbjct 776000 AAG----CTCTTCCAAATCTGGATACGCTATTTTCTCGCAAATGAACTGTGCGATACGAT 775945
Query 9107 CCCCCTTATTCACGACAAAGTCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTAC 9166
| || || || || | |||||| || || |||||||||||||| || || |||||||
Sbjct 775944 CACCTTTCTTGACTTCGAAGTCTACTTCCGAGTGATTGAACAGCACTACACCAACGTTAC 775885
Query 9167 CCCTGTAATCCTCATCGATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTC 9226
| | ||| |||||||| | || || || ||||| |||||||| | ||| || || | |
Sbjct 775884 CGCGGTAGTCCTCATCAACGACGCCGGCTCCCACATCGATGAAATTCTTCACAGCCAACC 775825
Query 9227 CAGAGCGGGGCGC 9239
|||| || || ||
Sbjct 775824 CAGAACGAGGAGC 775812
>seq575
Length=281738
Score = 98.7 bits (108), Expect = 8e-16
Identities = 155/222 (70%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| || | ||||| ||| || || ||| || ||||| || || ||||| || | ||
Sbjct 24163 AGGCGAAGCACCAGATGAAGGGTCGACTCCTTCTGAATGTTATAGTCAGACAGTGTGCGT 24104
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || |||| |||||||||||| || |||| ||||| ||||||| || | |||||||
Sbjct 24103 CCATCCTCCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCCGGCGGGATGCCCTCC 24044
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
|| || ||||| || ||| | | | || || | ||| ||||| | |||
Sbjct 24043 TTATCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTA 23984
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770
|| || || ||||| | ||||| || || ||||||||||||
Sbjct 23983 ATAGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCGTG 23942
>seq949
Length=1771395
Score = 96.9 bits (106), Expect = 3e-15
Identities = 163/233 (70%), Gaps = 10/233 (4%)
Strand=Plus/Plus
Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGT-GCTCTCTTTTTGAATATTGTAATCAG 48597
||| ||| | || || | ||||| ||| | ||| | || | | || |||||||||||||
Sbjct 448950 GCCACCCTTAAGTCGAAGCACCAGATGCATCGTCGATC-CATGCTGGATATTGTAATCAG 449008
Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657
||| | ||||| | ||||| ||||| || |||||||| || | ||||| || |||| |
Sbjct 449009 ATATAATTCGACCCTCGTCTAACTGTTTGCCGGCAAAGATAATACGCTGCTGGTCCGGTG 449068
Query 48658 GAACGCCCTCCTTGTCGCTAAT----CTTTTGTTTTACAGAACCCACAGACTCTGACGCC 48713
|| ||||| || || ||||| | | ||||||| | || || ||
Sbjct 449069 CAATACCCTCACGTTCCAAGATTTTATTTTTGATGTCCAGAACC----GTTTCCGAAGCA 449124
Query 48714 TCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
| || || | || |||||||| ||||| || ||||||||||| ||||||||
Sbjct 449125 ACAACATCAAGGGTGATCGTTTTACCCGTTAATGTTTTTACAAAGATCTGCAT 449177
Score = 95.1 bits (104), Expect = 9e-15
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
|| || | ||| || | |||| ||| || || || || ||||||||||| || ||
Sbjct 446670 CCACCACGTAGACGAAGGACCAGATGGAGAGTCGATTCCTTCTGAATATTGTAGTCCGAC 446729
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
|| | || | || ||||||||||| || ||||| ||||| ||||| ||||| | ||
Sbjct 446730 AGCGTACGGCCATCTTCCAACTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTGGTGGG 446789
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719
| |||||||| || |||||| || ||| | | | || || | ||| |||
Sbjct 446790 ATTCCCTCCTTATCCTGAATCTTGGCCTTAACATTCTCGATGGTATCGGATGGCTCAACC 446849
Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|||| || ||||| ||||| || | ||| || || || ||||||||
Sbjct 446850 TCCAGGGTGATCGTCTTTCCAGTTAGAGTCTTGACGAAGATCTGCAT 446896
>seq672
Length=1102954
Score = 96.9 bits (106), Expect = 3e-15
Identities = 152/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| |||| ||||| ||| || || || || ||||| ||||| || || ||| | ||
Sbjct 391586 AGTCGCAGCACCAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCCGACAGAGTGCGG 391645
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || |||| |||||||||||| || || || ||||| ||||| | ||||| || |||
Sbjct 391646 CCATCCTCCAGCTGCTTACCGGCGAAGATGAGACGCTGCTGATCTGGGGGAATTCCTTCC 391705
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
|| || ||||||| || ||| | | | || || | ||| ||||| | ||
Sbjct 391706 TTATCCTGAATCTTTGCCTTCACATTTTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTG 391765
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || || || || | ||||| || |||||||||||
Sbjct 391766 ATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCAT 391803
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380931137393616
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |