Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq561 113 3e-20 seq575 98.7 8e-16 seq949 96.9 3e-15 seq672 96.9 3e-15 >seq561 Length=1311501 Score = 113 bits (124), Expect = 3e-20 Identities = 178/253 (70%), Gaps = 8/253 (3%) Strand=Plus/Minus Query 8991 TTAATTAGTACCGGTTGACCCAAACCCTCCCTCTCCGCGATTGGTGTCAGT---CGT-GG 9046 |||||| |||||||| || ||||| ||||| | || || | ||||| || ||| || Sbjct 776060 TTAATTCGTACCGGTAGATCCAAAACCTCCTGCACCTCGTTCTGTGTCCGTAAGCGTCGG 776001 Query 9047 AAGTAACCTCTACCAGTGTGGGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGT 9106 ||| |||| ||| ||||| |||| || ||||| || || || || | | Sbjct 776000 AAG----CTCTTCCAAATCTGGATACGCTATTTTCTCGCAAATGAACTGTGCGATACGAT 775945 Query 9107 CCCCCTTATTCACGACAAAGTCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTAC 9166 | || || || || | |||||| || || |||||||||||||| || || ||||||| Sbjct 775944 CACCTTTCTTGACTTCGAAGTCTACTTCCGAGTGATTGAACAGCACTACACCAACGTTAC 775885 Query 9167 CCCTGTAATCCTCATCGATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTC 9226 | | ||| |||||||| | || || || ||||| |||||||| | ||| || || | | Sbjct 775884 CGCGGTAGTCCTCATCAACGACGCCGGCTCCCACATCGATGAAATTCTTCACAGCCAACC 775825 Query 9227 CAGAGCGGGGCGC 9239 |||| || || || Sbjct 775824 CAGAACGAGGAGC 775812 >seq575 Length=281738 Score = 98.7 bits (108), Expect = 8e-16 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||| ||| || || ||| || ||||| || || ||||| || | || Sbjct 24163 AGGCGAAGCACCAGATGAAGGGTCGACTCCTTCTGAATGTTATAGTCAGACAGTGTGCGT 24104 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||||||||| || |||| ||||| ||||||| || | ||||||| Sbjct 24103 CCATCCTCCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCCGGCGGGATGCCCTCC 24044 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||||| || ||| | | | || || | ||| ||||| | ||| Sbjct 24043 TTATCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTA 23984 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || || || ||||| | ||||| || || |||||||||||| Sbjct 23983 ATAGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCGTG 23942 >seq949 Length=1771395 Score = 96.9 bits (106), Expect = 3e-15 Identities = 163/233 (70%), Gaps = 10/233 (4%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGT-GCTCTCTTTTTGAATATTGTAATCAG 48597 ||| ||| | || || | ||||| ||| | ||| | || | | || ||||||||||||| Sbjct 448950 GCCACCCTTAAGTCGAAGCACCAGATGCATCGTCGATC-CATGCTGGATATTGTAATCAG 449008 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 ||| | ||||| | ||||| ||||| || |||||||| || | ||||| || |||| | Sbjct 449009 ATATAATTCGACCCTCGTCTAACTGTTTGCCGGCAAAGATAATACGCTGCTGGTCCGGTG 449068 Query 48658 GAACGCCCTCCTTGTCGCTAAT----CTTTTGTTTTACAGAACCCACAGACTCTGACGCC 48713 || ||||| || || ||||| | | ||||||| | || || || Sbjct 449069 CAATACCCTCACGTTCCAAGATTTTATTTTTGATGTCCAGAACC----GTTTCCGAAGCA 449124 Query 48714 TCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 | || || | || |||||||| ||||| || ||||||||||| |||||||| Sbjct 449125 ACAACATCAAGGGTGATCGTTTTACCCGTTAATGTTTTTACAAAGATCTGCAT 449177 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || | ||| || | |||| ||| || || || || ||||||||||| || || Sbjct 446670 CCACCACGTAGACGAAGGACCAGATGGAGAGTCGATTCCTTCTGAATATTGTAGTCCGAC 446729 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || | || ||||||||||| || ||||| ||||| ||||| ||||| | || Sbjct 446730 AGCGTACGGCCATCTTCCAACTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTGGTGGG 446789 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||| || |||||| || ||| | | | || || | ||| ||| Sbjct 446790 ATTCCCTCCTTATCCTGAATCTTGGCCTTAACATTCTCGATGGTATCGGATGGCTCAACC 446849 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || ||||| ||||| || | ||| || || || |||||||| Sbjct 446850 TCCAGGGTGATCGTCTTTCCAGTTAGAGTCTTGACGAAGATCTGCAT 446896 >seq672 Length=1102954 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||| ||| || || || || ||||| ||||| || || ||| | || Sbjct 391586 AGTCGCAGCACCAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCCGACAGAGTGCGG 391645 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||||||||| || || || ||||| ||||| | ||||| || ||| Sbjct 391646 CCATCCTCCAGCTGCTTACCGGCGAAGATGAGACGCTGCTGATCTGGGGGAATTCCTTCC 391705 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||||||| || ||| | | | || || | ||| ||||| | || Sbjct 391706 TTATCCTGAATCTTTGCCTTCACATTTTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTG 391765 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | ||||| || ||||||||||| Sbjct 391766 ATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCAT 391803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380931137393616