Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq872 167 4e-36 seq628 118 2e-21 >seq872 Length=887634 Score = 167 bits (184), Expect = 4e-36 Identities = 763/1183 (64%), Gaps = 64/1183 (5%) Strand=Plus/Plus Query 212900 CAGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGA 212959 ||| ||| |||| || | |||||| || || || ||||| | | | ||||| ||| || Sbjct 221278 CAGATGATGGTTCACCACCTGGAACTCGCCCGATAGCACACGTCGGTTGTAAACGTTCGA 221337 Query 212960 AGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCAT 213019 ||||| ||||||| | ||| ||||| |||| || ||||| || ||||| ||||| Sbjct 221338 CGTGTACGGCTCGAAGGACTCATTGTTGCCCAATATTTGTGCCGTCGAAGCTGTCGGCAT 221397 Query 213020 GGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGC 213079 || |||| ||| || ||| | | ||||||| | || | | ||||| Sbjct 221398 CGGTGCCAGCAGTAGCGAGTTACGAATACCGTGCTTTGCAATCTTCTCCTTCAACTCTGT 221457 Query 213080 CCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGAT 213139 ||||| ||| |||| ||| || ||| ||||||||| || |||| | || Sbjct 221458 CCAGTTCCA-----CAGATCCGTCG--GTTCTTT--GTTCCACATTTCGTACTGTAGGAC 221508 Query 213140 GCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTG--GCCAGC 213197 || |||||||| || | || | || | ||| || || | | | || |||| Sbjct 221509 ACCCTTGCTCACTGGACAACCTTCATACGTCTCGTATGGACCGTCC--CGTGCAGCCAAT 221566 Query 213198 TCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTC 213257 |||||| || | ||| || | |||||||||||||||||||| | || ||||| Sbjct 221567 TCGCAGCTTGCTTCCAGTGCTCCATAGTAGATGGTTTCAAATATTTGTTGATTCAGCTTT 221626 Query 213258 TTGGCCTCTGGGGA--CGT---GA-AGGGCATCATCATGCGTTGGAACACATCAGCCAGC 213311 | ||||||| | ||| || || |||| | ||| ||| |||| |||| Sbjct 221627 TGGGCCTCTTCGCTTTCGTATGGATAGCGCATTAAAATG------AACGCATCGGCCATG 221680 Query 213312 CCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGA---CTTGGAGCACTCCTCC 213368 ||||| || ||||| |||||||| ||||| | || ||| || ||| | |||| | Sbjct 221681 CCCTGCACACCGATACCGATGGGCCTGTGGCGCATGTTGGAACGCTTCGC---CTCCGGC 221737 Query 213369 AAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACA 213428 | || || |||| ||||||||| ||||| || ||||| || | | |||| |||| Sbjct 221738 ACCGGATAGTAGTTTATGTCGATGATTTTGTTCAGATTGCGTGTTACTATCTTGGCGACA 221797 Query 213429 TGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCG 213488 | ||| | || || | || || | || | || ||| ||| ||| Sbjct 221798 TCCTTCAGCTTTACGAAATCGTAC--GTC-CTATCGGATTTTACGAACATGTTCAGTGCG 221854 Query 213489 ATGCTGGCCAGGTTGCAAACGGCCA---CCTCCTGAGAGTCTGTGTACTCCATGATCTCG 213545 || |||||| |||||||| || | | |||| || | |||||||| ||||| Sbjct 221855 ATCGAGGCCAGATTGCAAACCGCAATTTCATCCTTCGAC---GAGTACTCCACAATCTCA 221911 Query 213546 GTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCA 213605 ||||||| ||| || |||||||| | |||||| ||||| | |||||| | ||| Sbjct 221912 GTGCACAAGTTAGAACACTTAATGGTGCCAATGTTCTGCTGGTT-GCTTTTGCGGTTGCA 221970 Query 213606 -GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCT 213664 | ||||||||| ||||| || || || || || | ||| || | | ||| | Sbjct 221971 TGCATCCTTGTACAGCATATACGGTACGCCCGTTTCCACCTGCGATTCAATGATCGCGAA 222030 Query 213665 CCAGAGGTACCTG-GCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTA--CTG 213721 ||| | | |||| ||||| ||| || | | | || | |||||| | | Sbjct 222031 CCACAAAT-CCTGTGCCTTCACCTGGCGAATAAAACGACCCTCTTT---CTCGTAGCCAG 222086 Query 213722 TTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTC---CAGTCCCGGACAGGA-TG 213777 | ||| || | | ||| | | |||||| || || || || ||||| || Sbjct 222087 T--GTACAGTGCCTCGAACTTTTCACCCCAG---CTATCAGACAAACCGGGACAATCGTG 222141 Query 213778 CGGGACACATGAGGCTCCAGTCCCCGT-CATCTCTGACTCTCTGCATGAACAGGTCCGGG 213836 ||| ||||| || ||||| ||| | ||| || | || ||||||||| ||||| Sbjct 222142 AGGG-CACATTAGACTCCACATTTCGTTCGCCTCC-ACCCGCTCCATGAACAGATCCGGA 222199 Query 213837 ACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGC 213896 | ||||| ||| |||| ||| | | | | ||| || || | |||||| | Sbjct 222200 ATCCACAAGGCGTAAAACATGTCGCGTGCACGCACCTCCTCTTTGCCGGTGTTTTTCTTC 222259 Query 213897 AGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCC 213956 ||||| ||||| || || | || |||||||||| || | |||||||||||| || ||| Sbjct 222260 AGATCCAGAAACTCGAACACATCACCGTGCCACGGTTCGAGGTAGATGGCAAAAGCTCCC 222319 Query 213957 G---GCCTCTTGCCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACG 214013 | || | ||||| ||||| ||||| | |||| ||||| | | |||||| | Sbjct 222320 GGGCGCTTGTTGCCACCCTGATCCACGTATCGGGCCGTATTGTTGTACACGCGCAGCATT 222379 Query 214014 GGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACG 214056 || |||| |||||| || ||| || || |||| || |||| Sbjct 222380 GGCACCAACCCGTTTGAAATTCCATTCGTGCCCGAGATGTACG 222422 >seq628 Length=1452984 Score = 118 bits (130), Expect = 2e-21 Identities = 277/415 (67%), Gaps = 5/415 (1%) Strand=Plus/Plus Query 47953 CAGCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTAT 48012 ||||| |||| || ||| |||| ||||| | |||||| || | |||||| || | Sbjct 708011 CAGCAAACGATCGGCTACGAACTCAATGTACTGTGACATCAGATCGCAGTTCATACCGAG 708070 Query 48013 GAGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCA-CGGCTTCCCCCA 48071 | || |||| || || || | ||| |||| ||| || |||| | || || | | Sbjct 708071 CATATCGACTGGCAGTGCTTTCGTCAAAAATTCCTGCTCGAT-TGCAACCGCATCACGGA 708129 Query 48072 CAATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGC 48131 || | | ||||| || || ||||| | ||| | ||| | | | || || Sbjct 708130 TGATGGCCGTCACGCGCTCCTTCGAAGGTTTCTGTACCAGATACTT---AAACATCAGGC 708186 Query 48132 AGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGAC 48191 |||||||||| | ||| | ||||| || || || ||| |||| |||||| || | Sbjct 708187 AGGCAAAGTCACAGTGTAGTCCTTCATCACGCGAAATCAGCTCGTTCGAGAAGGTAAGTC 708246 Query 48192 CAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGA 48251 | ||||| | || | || || ||||||||||| || || || || |||||||| Sbjct 708247 CCGGCATCAGTCCACGCTTCTTCAGCCAGAAAATGGCGGCAAAGCTACCGCTGAAGAAGA 708306 Query 48252 TGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGA 48311 | || || || || || |||||| || | ||| || || || |||||| ||||| Sbjct 708307 TACCTTCGACAGCAGCAAACGCGACGACACGCTCGCCAAAGTTTGCCTTCTTGCTTGAGA 708366 Query 48312 TCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGC 48366 ||||| || ||||| || ||||||||||| | ||| |||| ||| || || || Sbjct 708367 TCCAGTTCAGTGCCCAATCGGCCTTCTTCTTCACGCACGGCAGCGTTTCAATTGC 708421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931516591329280