Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28]
1,392 sequences; 225,223,604 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq872 167 4e-36
seq628 118 2e-21
>seq872
Length=887634
Score = 167 bits (184), Expect = 4e-36
Identities = 763/1183 (64%), Gaps = 64/1183 (5%)
Strand=Plus/Plus
Query 212900 CAGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGA 212959
||| ||| |||| || | |||||| || || || ||||| | | | ||||| ||| ||
Sbjct 221278 CAGATGATGGTTCACCACCTGGAACTCGCCCGATAGCACACGTCGGTTGTAAACGTTCGA 221337
Query 212960 AGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCAT 213019
||||| ||||||| | ||| ||||| |||| || ||||| || ||||| |||||
Sbjct 221338 CGTGTACGGCTCGAAGGACTCATTGTTGCCCAATATTTGTGCCGTCGAAGCTGTCGGCAT 221397
Query 213020 GGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGC 213079
|| |||| ||| || ||| | | ||||||| | || | | |||||
Sbjct 221398 CGGTGCCAGCAGTAGCGAGTTACGAATACCGTGCTTTGCAATCTTCTCCTTCAACTCTGT 221457
Query 213080 CCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGAT 213139
||||| ||| |||| ||| || ||| ||||||||| || |||| | ||
Sbjct 221458 CCAGTTCCA-----CAGATCCGTCG--GTTCTTT--GTTCCACATTTCGTACTGTAGGAC 221508
Query 213140 GCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTG--GCCAGC 213197
|| |||||||| || | || | || | ||| || || | | | || ||||
Sbjct 221509 ACCCTTGCTCACTGGACAACCTTCATACGTCTCGTATGGACCGTCC--CGTGCAGCCAAT 221566
Query 213198 TCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTC 213257
|||||| || | ||| || | |||||||||||||||||||| | || |||||
Sbjct 221567 TCGCAGCTTGCTTCCAGTGCTCCATAGTAGATGGTTTCAAATATTTGTTGATTCAGCTTT 221626
Query 213258 TTGGCCTCTGGGGA--CGT---GA-AGGGCATCATCATGCGTTGGAACACATCAGCCAGC 213311
| ||||||| | ||| || || |||| | ||| ||| |||| ||||
Sbjct 221627 TGGGCCTCTTCGCTTTCGTATGGATAGCGCATTAAAATG------AACGCATCGGCCATG 221680
Query 213312 CCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGA---CTTGGAGCACTCCTCC 213368
||||| || ||||| |||||||| ||||| | || ||| || ||| | |||| |
Sbjct 221681 CCCTGCACACCGATACCGATGGGCCTGTGGCGCATGTTGGAACGCTTCGC---CTCCGGC 221737
Query 213369 AAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACA 213428
| || || |||| ||||||||| ||||| || ||||| || | | |||| ||||
Sbjct 221738 ACCGGATAGTAGTTTATGTCGATGATTTTGTTCAGATTGCGTGTTACTATCTTGGCGACA 221797
Query 213429 TGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCG 213488
| ||| | || || | || || | || | || ||| ||| |||
Sbjct 221798 TCCTTCAGCTTTACGAAATCGTAC--GTC-CTATCGGATTTTACGAACATGTTCAGTGCG 221854
Query 213489 ATGCTGGCCAGGTTGCAAACGGCCA---CCTCCTGAGAGTCTGTGTACTCCATGATCTCG 213545
|| |||||| |||||||| || | | |||| || | |||||||| |||||
Sbjct 221855 ATCGAGGCCAGATTGCAAACCGCAATTTCATCCTTCGAC---GAGTACTCCACAATCTCA 221911
Query 213546 GTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCA 213605
||||||| ||| || |||||||| | |||||| ||||| | |||||| | |||
Sbjct 221912 GTGCACAAGTTAGAACACTTAATGGTGCCAATGTTCTGCTGGTT-GCTTTTGCGGTTGCA 221970
Query 213606 -GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCT 213664
| ||||||||| ||||| || || || || || | ||| || | | ||| |
Sbjct 221971 TGCATCCTTGTACAGCATATACGGTACGCCCGTTTCCACCTGCGATTCAATGATCGCGAA 222030
Query 213665 CCAGAGGTACCTG-GCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTA--CTG 213721
||| | | |||| ||||| ||| || | | | || | |||||| | |
Sbjct 222031 CCACAAAT-CCTGTGCCTTCACCTGGCGAATAAAACGACCCTCTTT---CTCGTAGCCAG 222086
Query 213722 TTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTC---CAGTCCCGGACAGGA-TG 213777
| ||| || | | ||| | | |||||| || || || || ||||| ||
Sbjct 222087 T--GTACAGTGCCTCGAACTTTTCACCCCAG---CTATCAGACAAACCGGGACAATCGTG 222141
Query 213778 CGGGACACATGAGGCTCCAGTCCCCGT-CATCTCTGACTCTCTGCATGAACAGGTCCGGG 213836
||| ||||| || ||||| ||| | ||| || | || ||||||||| |||||
Sbjct 222142 AGGG-CACATTAGACTCCACATTTCGTTCGCCTCC-ACCCGCTCCATGAACAGATCCGGA 222199
Query 213837 ACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGC 213896
| ||||| ||| |||| ||| | | | | ||| || || | |||||| |
Sbjct 222200 ATCCACAAGGCGTAAAACATGTCGCGTGCACGCACCTCCTCTTTGCCGGTGTTTTTCTTC 222259
Query 213897 AGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCC 213956
||||| ||||| || || | || |||||||||| || | |||||||||||| || |||
Sbjct 222260 AGATCCAGAAACTCGAACACATCACCGTGCCACGGTTCGAGGTAGATGGCAAAAGCTCCC 222319
Query 213957 G---GCCTCTTGCCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACG 214013
| || | ||||| ||||| ||||| | |||| ||||| | | |||||| |
Sbjct 222320 GGGCGCTTGTTGCCACCCTGATCCACGTATCGGGCCGTATTGTTGTACACGCGCAGCATT 222379
Query 214014 GGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACG 214056
|| |||| |||||| || ||| || || |||| || ||||
Sbjct 222380 GGCACCAACCCGTTTGAAATTCCATTCGTGCCCGAGATGTACG 222422
>seq628
Length=1452984
Score = 118 bits (130), Expect = 2e-21
Identities = 277/415 (67%), Gaps = 5/415 (1%)
Strand=Plus/Plus
Query 47953 CAGCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTAT 48012
||||| |||| || ||| |||| ||||| | |||||| || | |||||| || |
Sbjct 708011 CAGCAAACGATCGGCTACGAACTCAATGTACTGTGACATCAGATCGCAGTTCATACCGAG 708070
Query 48013 GAGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCA-CGGCTTCCCCCA 48071
| || |||| || || || | ||| |||| ||| || |||| | || || | |
Sbjct 708071 CATATCGACTGGCAGTGCTTTCGTCAAAAATTCCTGCTCGAT-TGCAACCGCATCACGGA 708129
Query 48072 CAATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGC 48131
|| | | ||||| || || ||||| | ||| | ||| | | | || ||
Sbjct 708130 TGATGGCCGTCACGCGCTCCTTCGAAGGTTTCTGTACCAGATACTT---AAACATCAGGC 708186
Query 48132 AGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGAC 48191
|||||||||| | ||| | ||||| || || || ||| |||| |||||| || |
Sbjct 708187 AGGCAAAGTCACAGTGTAGTCCTTCATCACGCGAAATCAGCTCGTTCGAGAAGGTAAGTC 708246
Query 48192 CAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGA 48251
| ||||| | || | || || ||||||||||| || || || || ||||||||
Sbjct 708247 CCGGCATCAGTCCACGCTTCTTCAGCCAGAAAATGGCGGCAAAGCTACCGCTGAAGAAGA 708306
Query 48252 TGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGA 48311
| || || || || || |||||| || | ||| || || || |||||| |||||
Sbjct 708307 TACCTTCGACAGCAGCAAACGCGACGACACGCTCGCCAAAGTTTGCCTTCTTGCTTGAGA 708366
Query 48312 TCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGC 48366
||||| || ||||| || ||||||||||| | ||| |||| ||| || || ||
Sbjct 708367 TCCAGTTCAGTGCCCAATCGGCCTTCTTCTTCACGCACGGCAGCGTTTCAATTGC 708421
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931516591329280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |