Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq872 158 2e-33 seq628 118 2e-21 >seq872 Length=887634 Score = 158 bits (174), Expect = 2e-33 Identities = 604/935 (65%), Gaps = 34/935 (4%) Strand=Plus/Plus Query 221356 CACCGGACTCCCATCGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGACTG 221415 ||| |||| || || |||| |||||| ||||||| | || | ||| |||| | || Sbjct 221518 CACTGGACAACCTTCATACGTCTCGTATGGACCGTCCCGTGCAGCCAATTCGCA-GCTTG 221576 Query 221416 CGTC-AGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCT-CTT---GGCC 221470 | || || || | | ||||||||| ||||| || ||||||| || ||| |||| Sbjct 221577 CTTCCAGTGCTCCATAGTAGATGGTTTCAAATAT----TTGTTGATTCAGCTTTTGGGCC 221632 Query 221471 TCGGGAGAAGTGAAGGGCATA-CGCAGCATC-TGAAAGACGTCGGCCAGTCCCTGTACTC 221528 || | | || ||| |||| | |||| | | ||||||| ||||| || | Sbjct 221633 TCTTCGCTTTCGTATGG-ATAGCGCATTAAAATGAACG-CATCGGCCATGCCCTGCACAC 221690 Query 221529 CGATACCGATGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGT 221588 ||||||||||||||||||| | | |||||||| ||| || ||||| ||||| ||| Sbjct 221691 CGATACCGATGGGCCTGTGGCGCATGTTGGAACGCTTCGCCTCCGGCACCGGATAGTAGT 221750 Query 221589 TGACGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCT 221648 | | |||||| | ||||| || || | || | | || | || || ||||||| Sbjct 221751 TTATGTCGATGATTTTGTTCAGATTGCGTGTTACTATCTTGGCGACATCCTTCAGCTTT- 221809 Query 221649 GGTGATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAA 221708 || || ||| |||| | || || || || ||| || || | Sbjct 221810 -----------ACGAAATCGTA--CGTCCTATCGGATTTT-ACGAACATGTTCAGTGCGA 221855 Query 221709 CGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTAC 221768 |||||| || || || || | || ||||| | |||| | ||||| || | Sbjct 221856 TCGAGGCCAGATTGCAAACCGCAATTTCATCCTTCGACGAGTACTCCACAATCTCAGTGC 221915 Query 221769 AGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGT 221828 | | ||| ||||| ||||| || | || | || || ||||| ||| || | Sbjct 221916 ACAAGTTAGAACACTTAATGGTGCCAATGTTCTGCTGGTTGCTTTTGCGGTTGCATGCAT 221975 Query 221829 CCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGA 221888 ||||||| |||||| | || |||| || |||| ||| | | | ||| | ||| | Sbjct 221976 CCTTGTACAGCATATACGGTACGCCCGTTTCCACCTGCGATTCAATGATCGCGAACCACA 222035 Query 221889 GTTCTCTG-GCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAG 221947 || ||| || ||||| | | | |||||| ||| | || || || || Sbjct 222036 AATC-CTGTGCCTTCACCTGGCGAATAAAACGACCCTCTTTCT---CGTAGCCAGTGTAC 222091 Query 221948 AGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATC 222007 || || ||||||||||| | || || || ||||| | || ||||| Sbjct 222092 AGTGCCTCGAACTTTTCACCCCAGCTATCAGACAAACCGGGACAATCGTGAGGGCACATT 222151 Query 222008 AGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCC 222067 |||||||| | ||| | | |||| || |||||| || ||||| ||||||| || Sbjct 222152 AGACTCCACATTTCGTTCGCCTCCACCCGCTCCATGAACAGATCCGGAATCCACAAGGCG 222211 Query 222068 TGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAAC 222127 | ||| | || | | ||| |||||| |||| |||||||| ||||||||| |||| Sbjct 222212 TAAAACATGTCGCGTGCACGCACCTCCTCTTTGCCGGTGTTTTTCTTCAGATCCAGAAAC 222271 Query 222128 TCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTG 222187 || || | ||| |||||||||| || || |||| ||| | ||| || || ||||||||| Sbjct 222272 TCGAACACATCACCGTGCCACGGTTCGAGGTAGATGGCAAAAGCTCCCGGGCGCTTGTTG 222331 Query 222188 CCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCG 222247 |||||||||||||| | || | |||| | | ||| || | || |||| ||| Sbjct 222332 CCACCCTGATCCACGTATCGGGCCGTATTGTTGTACACGCGCAGCATTGGCACCAACCCG 222391 Query 222248 TTGGATCGACCGTTGGTGCCCTTAATGTACGCACC 222282 || || || || |||||| ||||||| ||| Sbjct 222392 TTTGAAATTCCATTCGTGCCCGAGATGTACGTACC 222426 >seq628 Length=1452984 Score = 118 bits (130), Expect = 2e-21 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 25819 AAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAG 25878 |||| |||||| ||||| |||| |||||| ||| ||| || | ||||||||| Sbjct 708397 AAGAAGAAGGCCGATTGGGCACTGAACTGGATCTCAAGCAAGAAGGCAAACTTTGGCGAG 708338 Query 25879 CGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATC 25938 || | || || ||||||||||| || || ||||| ||||||||| ||||| ||||| Sbjct 708337 CGTGTCGTCGCGTTTGCTGCTGTCGAAGGTATCTTCTTCAGCGGTAGCTTTGCCGCCATT 708278 Query 25939 TTCTGGCTCAAGCAGAAGGGGACC-ATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAG 25997 |||||||| ||| || | |||| ||||| || || ||| || |||||||| || Sbjct 708277 TTCTGGCTGAAGAAGC-GTGGACTGATGCCGGGACTTACCTTCTCGAACGAGCTGATTTC 708219 Query 25998 CAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTG 26034 | || || || || ||| | || |||||||||||| Sbjct 708218 GCGTGATGAAGGACTACACTGTGACTTTGCCTGCCTG 708182 Score = 93.3 bits (102), Expect = 8e-14 Identities = 158/227 (70%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 25512 CTGGACCGCCGAAGAGATTGATCTGGCCAAGGACATGGACGGCTGGTA--CGCTCTATCC 25569 |||||||| |||||| | |||||| ||||||||||| | | |||| | || | | || Sbjct 708778 CTGGACCGTGGAAGAGGTGGATCTGTCCAAGGACATGAAAGACTGGGATTCGTTGAAACC 708719 Query 25570 AAAGACGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATA 25629 | ||| | || ||| || | |||| | || |||||||| || || ||||| || Sbjct 708718 GAG--CGAACGCCACTTTATCTCGCACGTACTTGCCTTCTTTGCCGCATCCGATGGCATC 708661 Query 25630 GTGAACGAGAATCTGTGCGAGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGT 25689 |||||||| || ||| ||| | |||| | ||| || ||| ||| || ||| Sbjct 708660 GTGAACGAAAACCTGGTCGAACGTTTCAGCCAGGAGGTACAGGTAACGGAAGCTCGCTGT 708601 Query 25690 TTCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTA 25736 || ||||| || || || || || |||||||||||| ||| |||| Sbjct 708600 TTTTACGGCTTTCAAATAGCGATGGAAAATGTGCACAGCGAGATGTA 708554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928828638100480