Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28]
1,392 sequences; 225,223,604 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq872 158 2e-33
seq628 118 2e-21
>seq872
Length=887634
Score = 158 bits (174), Expect = 2e-33
Identities = 604/935 (65%), Gaps = 34/935 (4%)
Strand=Plus/Plus
Query 221356 CACCGGACTCCCATCGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGACTG 221415
||| |||| || || |||| |||||| ||||||| | || | ||| |||| | ||
Sbjct 221518 CACTGGACAACCTTCATACGTCTCGTATGGACCGTCCCGTGCAGCCAATTCGCA-GCTTG 221576
Query 221416 CGTC-AGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCT-CTT---GGCC 221470
| || || || | | ||||||||| ||||| || ||||||| || ||| ||||
Sbjct 221577 CTTCCAGTGCTCCATAGTAGATGGTTTCAAATAT----TTGTTGATTCAGCTTTTGGGCC 221632
Query 221471 TCGGGAGAAGTGAAGGGCATA-CGCAGCATC-TGAAAGACGTCGGCCAGTCCCTGTACTC 221528
|| | | || ||| |||| | |||| | | ||||||| ||||| || |
Sbjct 221633 TCTTCGCTTTCGTATGG-ATAGCGCATTAAAATGAACG-CATCGGCCATGCCCTGCACAC 221690
Query 221529 CGATACCGATGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGT 221588
||||||||||||||||||| | | |||||||| ||| || ||||| ||||| |||
Sbjct 221691 CGATACCGATGGGCCTGTGGCGCATGTTGGAACGCTTCGCCTCCGGCACCGGATAGTAGT 221750
Query 221589 TGACGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCT 221648
| | |||||| | ||||| || || | || | | || | || || |||||||
Sbjct 221751 TTATGTCGATGATTTTGTTCAGATTGCGTGTTACTATCTTGGCGACATCCTTCAGCTTT- 221809
Query 221649 GGTGATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAA 221708
|| || ||| |||| | || || || || ||| || || |
Sbjct 221810 -----------ACGAAATCGTA--CGTCCTATCGGATTTT-ACGAACATGTTCAGTGCGA 221855
Query 221709 CGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTAC 221768
|||||| || || || || | || ||||| | |||| | ||||| || |
Sbjct 221856 TCGAGGCCAGATTGCAAACCGCAATTTCATCCTTCGACGAGTACTCCACAATCTCAGTGC 221915
Query 221769 AGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGT 221828
| | ||| ||||| ||||| || | || | || || ||||| ||| || |
Sbjct 221916 ACAAGTTAGAACACTTAATGGTGCCAATGTTCTGCTGGTTGCTTTTGCGGTTGCATGCAT 221975
Query 221829 CCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGA 221888
||||||| |||||| | || |||| || |||| ||| | | | ||| | ||| |
Sbjct 221976 CCTTGTACAGCATATACGGTACGCCCGTTTCCACCTGCGATTCAATGATCGCGAACCACA 222035
Query 221889 GTTCTCTG-GCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAG 221947
|| ||| || ||||| | | | |||||| ||| | || || || ||
Sbjct 222036 AATC-CTGTGCCTTCACCTGGCGAATAAAACGACCCTCTTTCT---CGTAGCCAGTGTAC 222091
Query 221948 AGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATC 222007
|| || ||||||||||| | || || || ||||| | || |||||
Sbjct 222092 AGTGCCTCGAACTTTTCACCCCAGCTATCAGACAAACCGGGACAATCGTGAGGGCACATT 222151
Query 222008 AGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCC 222067
|||||||| | ||| | | |||| || |||||| || ||||| ||||||| ||
Sbjct 222152 AGACTCCACATTTCGTTCGCCTCCACCCGCTCCATGAACAGATCCGGAATCCACAAGGCG 222211
Query 222068 TGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAAC 222127
| ||| | || | | ||| |||||| |||| |||||||| ||||||||| ||||
Sbjct 222212 TAAAACATGTCGCGTGCACGCACCTCCTCTTTGCCGGTGTTTTTCTTCAGATCCAGAAAC 222271
Query 222128 TCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTG 222187
|| || | ||| |||||||||| || || |||| ||| | ||| || || |||||||||
Sbjct 222272 TCGAACACATCACCGTGCCACGGTTCGAGGTAGATGGCAAAAGCTCCCGGGCGCTTGTTG 222331
Query 222188 CCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCG 222247
|||||||||||||| | || | |||| | | ||| || | || |||| |||
Sbjct 222332 CCACCCTGATCCACGTATCGGGCCGTATTGTTGTACACGCGCAGCATTGGCACCAACCCG 222391
Query 222248 TTGGATCGACCGTTGGTGCCCTTAATGTACGCACC 222282
|| || || || |||||| ||||||| |||
Sbjct 222392 TTTGAAATTCCATTCGTGCCCGAGATGTACGTACC 222426
>seq628
Length=1452984
Score = 118 bits (130), Expect = 2e-21
Identities = 158/217 (73%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 25819 AAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAG 25878
|||| |||||| ||||| |||| |||||| ||| ||| || | |||||||||
Sbjct 708397 AAGAAGAAGGCCGATTGGGCACTGAACTGGATCTCAAGCAAGAAGGCAAACTTTGGCGAG 708338
Query 25879 CGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATC 25938
|| | || || ||||||||||| || || ||||| ||||||||| ||||| |||||
Sbjct 708337 CGTGTCGTCGCGTTTGCTGCTGTCGAAGGTATCTTCTTCAGCGGTAGCTTTGCCGCCATT 708278
Query 25939 TTCTGGCTCAAGCAGAAGGGGACC-ATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAG 25997
|||||||| ||| || | |||| ||||| || || ||| || |||||||| ||
Sbjct 708277 TTCTGGCTGAAGAAGC-GTGGACTGATGCCGGGACTTACCTTCTCGAACGAGCTGATTTC 708219
Query 25998 CAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTG 26034
| || || || || ||| | || ||||||||||||
Sbjct 708218 GCGTGATGAAGGACTACACTGTGACTTTGCCTGCCTG 708182
Score = 93.3 bits (102), Expect = 8e-14
Identities = 158/227 (70%), Gaps = 4/227 (2%)
Strand=Plus/Minus
Query 25512 CTGGACCGCCGAAGAGATTGATCTGGCCAAGGACATGGACGGCTGGTA--CGCTCTATCC 25569
|||||||| |||||| | |||||| ||||||||||| | | |||| | || | | ||
Sbjct 708778 CTGGACCGTGGAAGAGGTGGATCTGTCCAAGGACATGAAAGACTGGGATTCGTTGAAACC 708719
Query 25570 AAAGACGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATA 25629
| ||| | || ||| || | |||| | || |||||||| || || ||||| ||
Sbjct 708718 GAG--CGAACGCCACTTTATCTCGCACGTACTTGCCTTCTTTGCCGCATCCGATGGCATC 708661
Query 25630 GTGAACGAGAATCTGTGCGAGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGT 25689
|||||||| || ||| ||| | |||| | ||| || ||| ||| || |||
Sbjct 708660 GTGAACGAAAACCTGGTCGAACGTTTCAGCCAGGAGGTACAGGTAACGGAAGCTCGCTGT 708601
Query 25690 TTCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTA 25736
|| ||||| || || || || || |||||||||||| ||| ||||
Sbjct 708600 TTTTACGGCTTTCAAATAGCGATGGAAAATGTGCACAGCGAGATGTA 708554
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928828638100480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |