Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28]
1,392 sequences; 225,223,604 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq335 192 4e-43
seq451 109 4e-18
seq672 102 5e-16
seq506 89.7 3e-12
>seq335
Length=1493947
Score = 192 bits (212), Expect = 4e-43
Identities = 376/551 (68%), Gaps = 6/551 (1%)
Strand=Plus/Minus
Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388
||| ||||||||||| | || || || ||||| ||||| | |||| || | ||||||
Sbjct 63723 GCAGTTGGTATTGATCTGGGCACGACCTACAGCTGTGTCGGAGTTTTCCAGCACGGTAAA 63664
Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448
|||||||| || ||||||||||| ||||| |||| || ||||| ||||| | || |||
Sbjct 63663 GTAGAAATCATCGCCAATGACCAGGGTAACCGAACCACGCCATCGTATGTGGCCTTCACT 63604
Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508
|| || || | ||| ||||| |||||||| || | || | ||| || || ||
Sbjct 63603 GACACGGAGCGTCTGATTGGCGATGCTGCCAAGAACCAGGTTGCCATGAACCCGACCAAC 63544
Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCT 474568
|| || || ||||| || | |||||||||| || ||||| ||| || | |||| ||
Sbjct 63543 ACGATCTTCGATGCCAAGCGTCTGATTGGTCGCAAGTTTGACGATCCCGCCATCCAGGCT 63484
Query 474569 GATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAG-- 474626
|| ||| |||||||| || ||||| | | | || |||||| | || | |
Sbjct 63483 GACATGAAGCATTGGCCGTTCGAGGTGGAATCGATCGAGGGCAAACCAAAGATTGCGGTC 63424
Query 474627 CAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAG 474686
| |||| | || || | ||| || | ||||| | | || ||||| |
Sbjct 63423 GAGTACAAG--GGCGAGAAGAAATCGTTCTTCCCGGAGGAGGTCAGCTCGATGGTGCTGA 63366
Query 474687 CCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGA-AGTAACTGATGCAGTAATT 474745
|||| ||||| |||| || |||| | ||| ||||| || || |||| || |||
Sbjct 63365 CCAAGATGAAGGAAACGGCCGAAGCATA-CCTGGGCAAGACTGTGACGAATGCCGTCATT 63307
Query 474746 ACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATT 474805
|| || ||||| || || || ||||| || || || || || || ||||| |||| |||
Sbjct 63306 ACCGTGCCAGCCTACTTCAACGATTCGCAGCGCCAGGCGACGAAGGATGCCGGAACCATT 63247
Query 474806 GCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGT 474865
|||| | || || | ||||| || || || || || || ||||| | || || |||
Sbjct 63246 TCAGGATTGAACGTGCTGCGTATCATCAACGAGCCGACCGCGGCCGCCATCGCCTACGGT 63187
Query 474866 CTTGATAAGAA 474876
|| || |||||
Sbjct 63186 CTGGACAAGAA 63176
>seq451
Length=710502
Score = 109 bits (120), Expect = 4e-18
Identities = 244/362 (67%), Gaps = 6/362 (2%)
Strand=Plus/Plus
Query 474518 GATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATATGCGT 474577
||||| || | |||| |||||||| ||||| || | || || || ||||||
Sbjct 407069 GATGCGAAGCGTCTGATCGGTCGTAAGTTTGACGACGCAACCGTACAGAGCGATATGAAG 407128
Query 474578 CATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGCAA--TACACG 474635
|||||||| || ||||||| | || ||||| ||||| | | | | | |||| |
Sbjct 407129 CATTGGCCGTTCGAGGTGATCAGTGACGGTGGCAAACCGAAGCTGCAGGTAGAGTACAAG 407188
Query 474636 CAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGA 474695
|| || | || || | ||||| || |||| || ||||| | |||| ||||
Sbjct 407189 --GGCGATAAGAAGTCCTTCTTCCCGGAGGAAGTTTCCTCGATGGTGCTGACCAAGATGA 407246
Query 474696 AACAAACCGCGAGCTCATATCTTGGACAAGAAG-TAACTGATGCAGTAATTACTGTTCCA 474754
| |||| || | || || || ||||| | | ||||||| || || || |||
Sbjct 407247 AGGAAACGGCCGAAGCGTACCTGGG-CAAGAGCATCGCCAATGCAGTCATCACGGTCCCA 407305
Query 474755 GCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTT 474814
|| || || || ||||| |||||||| || ||||||||||| || || || ||| |
Sbjct 407306 GCGTACTTCAACGATTCGCAACGTCAGGCCACTAAAGATGCTGGTGCGATCGCCGGTTTG 407365
Query 474815 AATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAG 474874
||||| | || || ||||| ||||| || ||||| || |||| || || || || |||
Sbjct 407366 AATGTGCTGCGCATCATTAACGAACCGACGGCAGCGGCCATTGCGTACGGGCTGGACAAG 407425
Query 474875 AA 474876
||
Sbjct 407426 AA 407427
>seq672
Length=1102954
Score = 102 bits (112), Expect = 5e-16
Identities = 154/219 (70%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
|||||| || || || |||||||| ||| ||| || || || || || | |||||
Sbjct 391582 ACGAAGTCGCAGCACCAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCCGACAGAGT 391641
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
| | ||| || || ||||| || || || || ||||| || ||||| || ||||||||
Sbjct 391642 GCGGCCATCCTCCAGCTGCTTACCGGCGAAGATGAGACGCTGCTGATCTGGGGGAATTCC 391701
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730
|||||| || ||||||||| || ||| ||| || || || | | |||||
Sbjct 391702 TTCCTTATCCTGAATCTTTGCCTTCACATTTTCGATCGTGTCCGAAGGCTCGACCTCAAG 391761
Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|| || || || |||||||| || || |||||||| ||
Sbjct 391762 TGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTG 391800
>seq506
Length=1292245
Score = 89.7 bits (98), Expect = 3e-12
Identities = 118/164 (72%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 817098 TAGATTTTTCATCTCCAAATATTGCAAAGGAAATGCATATTGGACACTTGAGATCTACAA 817157
|||| || || || || ||| | || || ||||||||| |||| || || | || || |
Sbjct 1076234 TAGACTTCTCGTCGCCCAATGTGGCGAAAGAAATGCATGTTGGCCATTTACGTTCGACCA 1076293
Query 817158 TAATTGGTGAATCTCTTTGTAGAATATATGAATTTTGTGGATGTGAAGTACAAAGAATAA 817217
|||||||||| || ||||| | | |||||| ||| ||| ||| | ||||
Sbjct 1076294 TAATTGGTGATTCGATTTGTCGTTTCCTGGAATTTGTTGGCCATGATGTATTGCGCATAA 1076353
Query 817218 ATCATATTGGTGATTGGGGAACACAATTTGGTATGTTAATTGCA 817261
| || || ||||| |||||||| || || || ||||||||||||
Sbjct 1076354 ACCACATCGGTGACTGGGGAACGCAGTTCGGCATGTTAATTGCA 1076397
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3268119490366016
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |