Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq335 192 4e-43 seq451 109 4e-18 seq672 102 5e-16 seq506 89.7 3e-12 >seq335 Length=1493947 Score = 192 bits (212), Expect = 4e-43 Identities = 376/551 (68%), Gaps = 6/551 (1%) Strand=Plus/Minus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 ||| ||||||||||| | || || || ||||| ||||| | |||| || | |||||| Sbjct 63723 GCAGTTGGTATTGATCTGGGCACGACCTACAGCTGTGTCGGAGTTTTCCAGCACGGTAAA 63664 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 |||||||| || ||||||||||| ||||| |||| || ||||| ||||| | || ||| Sbjct 63663 GTAGAAATCATCGCCAATGACCAGGGTAACCGAACCACGCCATCGTATGTGGCCTTCACT 63604 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || || || | ||| ||||| |||||||| || | || | ||| || || || Sbjct 63603 GACACGGAGCGTCTGATTGGCGATGCTGCCAAGAACCAGGTTGCCATGAACCCGACCAAC 63544 Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCT 474568 || || || ||||| || | |||||||||| || ||||| ||| || | |||| || Sbjct 63543 ACGATCTTCGATGCCAAGCGTCTGATTGGTCGCAAGTTTGACGATCCCGCCATCCAGGCT 63484 Query 474569 GATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAG-- 474626 || ||| |||||||| || ||||| | | | || |||||| | || | | Sbjct 63483 GACATGAAGCATTGGCCGTTCGAGGTGGAATCGATCGAGGGCAAACCAAAGATTGCGGTC 63424 Query 474627 CAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAG 474686 | |||| | || || | ||| || | ||||| | | || ||||| | Sbjct 63423 GAGTACAAG--GGCGAGAAGAAATCGTTCTTCCCGGAGGAGGTCAGCTCGATGGTGCTGA 63366 Query 474687 CCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGA-AGTAACTGATGCAGTAATT 474745 |||| ||||| |||| || |||| | ||| ||||| || || |||| || ||| Sbjct 63365 CCAAGATGAAGGAAACGGCCGAAGCATA-CCTGGGCAAGACTGTGACGAATGCCGTCATT 63307 Query 474746 ACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATT 474805 || || ||||| || || || ||||| || || || || || || ||||| |||| ||| Sbjct 63306 ACCGTGCCAGCCTACTTCAACGATTCGCAGCGCCAGGCGACGAAGGATGCCGGAACCATT 63247 Query 474806 GCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGT 474865 |||| | || || | ||||| || || || || || || ||||| | || || ||| Sbjct 63246 TCAGGATTGAACGTGCTGCGTATCATCAACGAGCCGACCGCGGCCGCCATCGCCTACGGT 63187 Query 474866 CTTGATAAGAA 474876 || || ||||| Sbjct 63186 CTGGACAAGAA 63176 >seq451 Length=710502 Score = 109 bits (120), Expect = 4e-18 Identities = 244/362 (67%), Gaps = 6/362 (2%) Strand=Plus/Plus Query 474518 GATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATATGCGT 474577 ||||| || | |||| |||||||| ||||| || | || || || |||||| Sbjct 407069 GATGCGAAGCGTCTGATCGGTCGTAAGTTTGACGACGCAACCGTACAGAGCGATATGAAG 407128 Query 474578 CATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGCAA--TACACG 474635 |||||||| || ||||||| | || ||||| ||||| | | | | | |||| | Sbjct 407129 CATTGGCCGTTCGAGGTGATCAGTGACGGTGGCAAACCGAAGCTGCAGGTAGAGTACAAG 407188 Query 474636 CAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGA 474695 || || | || || | ||||| || |||| || ||||| | |||| |||| Sbjct 407189 --GGCGATAAGAAGTCCTTCTTCCCGGAGGAAGTTTCCTCGATGGTGCTGACCAAGATGA 407246 Query 474696 AACAAACCGCGAGCTCATATCTTGGACAAGAAG-TAACTGATGCAGTAATTACTGTTCCA 474754 | |||| || | || || || ||||| | | ||||||| || || || ||| Sbjct 407247 AGGAAACGGCCGAAGCGTACCTGGG-CAAGAGCATCGCCAATGCAGTCATCACGGTCCCA 407305 Query 474755 GCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTT 474814 || || || || ||||| |||||||| || ||||||||||| || || || ||| | Sbjct 407306 GCGTACTTCAACGATTCGCAACGTCAGGCCACTAAAGATGCTGGTGCGATCGCCGGTTTG 407365 Query 474815 AATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAG 474874 ||||| | || || ||||| ||||| || ||||| || |||| || || || || ||| Sbjct 407366 AATGTGCTGCGCATCATTAACGAACCGACGGCAGCGGCCATTGCGTACGGGCTGGACAAG 407425 Query 474875 AA 474876 || Sbjct 407426 AA 407427 >seq672 Length=1102954 Score = 102 bits (112), Expect = 5e-16 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||| || || || |||||||| ||| ||| || || || || || | ||||| Sbjct 391582 ACGAAGTCGCAGCACCAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCCGACAGAGT 391641 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | ||| || || ||||| || || || || ||||| || ||||| || |||||||| Sbjct 391642 GCGGCCATCCTCCAGCTGCTTACCGGCGAAGATGAGACGCTGCTGATCTGGGGGAATTCC 391701 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 |||||| || ||||||||| || ||| ||| || || || | | ||||| Sbjct 391702 TTCCTTATCCTGAATCTTTGCCTTCACATTTTCGATCGTGTCCGAAGGCTCGACCTCAAG 391761 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || |||||||| || || |||||||| || Sbjct 391762 TGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTG 391800 >seq506 Length=1292245 Score = 89.7 bits (98), Expect = 3e-12 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 817098 TAGATTTTTCATCTCCAAATATTGCAAAGGAAATGCATATTGGACACTTGAGATCTACAA 817157 |||| || || || || ||| | || || ||||||||| |||| || || | || || | Sbjct 1076234 TAGACTTCTCGTCGCCCAATGTGGCGAAAGAAATGCATGTTGGCCATTTACGTTCGACCA 1076293 Query 817158 TAATTGGTGAATCTCTTTGTAGAATATATGAATTTTGTGGATGTGAAGTACAAAGAATAA 817217 |||||||||| || ||||| | | |||||| ||| ||| ||| | |||| Sbjct 1076294 TAATTGGTGATTCGATTTGTCGTTTCCTGGAATTTGTTGGCCATGATGTATTGCGCATAA 1076353 Query 817218 ATCATATTGGTGATTGGGGAACACAATTTGGTATGTTAATTGCA 817261 | || || ||||| |||||||| || || || |||||||||||| Sbjct 1076354 ACCACATCGGTGACTGGGGAACGCAGTTCGGCATGTTAATTGCA 1076397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268119490366016