Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq1360 170 3e-37 >seq1360 Length=640366 Score = 170 bits (188), Expect = 3e-37 Identities = 349/519 (67%), Gaps = 0/519 (0%) Strand=Plus/Minus Query 47788 CCTGTGGCAATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCCTCG 47847 || || ||||| ||||| || || |||| || || || | ||| | |||||| || ||| Sbjct 380913 CCCGTCGCAATTACAAAGTCTTCCGGTTTGTCCTGCTGCATCATAAGCCACATCGCTTCG 380854 Query 47848 ACATAATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATAAACAG 47907 || |||||| | || || ||||||||||| | || ||||| || || | | | | Sbjct 380853 ACGTAATCTTTTGCGTGGCCCCAGTCACGTTTCGAGTCGAGATTACCCAGCTCCAGATAC 380794 Query 47908 TCTTGCTTACCTTCAGAGATTGCTTTTAATGCTCTTGTAATCTTACGAGTTACAAAAGTT 47967 ||||||| || || ||| | | | | ||||| || || ||||||||| || Sbjct 380793 TCTTGCTGGCCGAGCGAAATTTTTGCCACCGAGCGGGTAATTTTGCGCGTTACAAAATTT 380734 Query 47968 TCACCACGTCTTGGAGATTCATGATTAAAAAGAATACCACTACAGGCATACATTCCGTAT 48027 || || || | || || || || ||||| ||||| || | ||||| |||| |||| Sbjct 380733 TCTCCCCGGCGCGGTGACTCGTGGTTAAAGAGAATCCCGTTGCAGGCGAACATGTCGTAC 380674 Query 48028 GATTCACGATAGTTCTTTACTATCCAGTACCCATAGAGTTTTGCAACACCATAAGGAGAA 48087 | ||| |||||||| | || |||||||| || || | || ||| | | || || || Sbjct 380673 GCTTCGCGATAGTTTATCACAATCCAGTATCCGTACATCTTCGCACAAGCGTACGGTGAG 380614 Query 48088 CGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCTTACCATAAAGTTCA 48147 ||||||||||| || || | || ||||||| ||||| |||||| || || || || Sbjct 380613 CGTGGATAGAACGGAGTCTTTTCGTTCTGTGGTGTCTCGGCCACCTTTCCGTACAGCTCC 380554 Query 48148 CTGGTGGATGCTTGATAGATACGAACCCTATCTTCCATCTCAAGCAAACGGACTGCCTCA 48207 ||||| ||||| |||| || || | | |||| | | | ||||| || || Sbjct 380553 GACGTGGAAGCTTGGTAGAAGCGGACAGTCTTTTCCTGCCCGACGGTACGGATGGCATCT 380494 Query 48208 AGCACTCTCAGGGTGCCTATGGCATCTGTCTGACCAGTATACTCGGGCATCTCAAACGAA 48267 |||| | || || || | |||||| || | ||||| ||| || || ||||| Sbjct 380493 AGCAAACGTAGTGTACCGACAGCATCTACCTCCGCCGTATATTCGCTCAAATCGAACGAT 380434 Query 48268 ACCTTTACATGACTCTGTGCCCCAAGATTATAAATCTCA 48306 | ||| || || || || || | ||||| || || ||| Sbjct 380433 ATCTTGACGTGGCTTTGGGCGGCCAGATTGTAGATTTCA 380395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665482820397440