Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq872 159 4e-34 seq1171 95.1 1e-14 seq628 82.4 9e-11 >seq872 Length=887634 Score = 159 bits (176), Expect = 4e-34 Identities = 461/702 (66%), Gaps = 17/702 (2%) Strand=Plus/Minus Query 75894 AATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGA 75953 |||| ||| ||| || || ||| |||||||| ||||||||||| || ||| || | Sbjct 222017 AATCGCAGGTGGAAACGGGCGTACCGTATATGCTGTACAAGGATGCATGCAACCGCAAAA 221958 Query 75954 GTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGT 76013 | ||||| |||| | || || || ||| | || || | ||||| || ||| | |||| Sbjct 221957 GCAACCAGCAGAACATTGGCACCATTAAGTGTTCTAACTTGTGCACTGAGATTGTGGAGT 221898 Query 76014 ACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATG 76073 || | |||||||| | || ||||||||| |||| || ||||| || | || | Sbjct 221897 ACTCGTCGAAGGATGAAATTGCGGTTTGCAATCTGGCCTCGATCGCACTGAACATGTTCG 221838 Query 76074 TCAATGAAGAGACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTA 76133 | || || | | || | |||| | ||| || | || || | ||||| || | Sbjct 221837 TAAAATCCGA---TAGGACGTACGATTTCGTAAAGCTGAAGGATGTCGCCAAGATAGTAA 221781 Query 76134 CCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGTTGAGACTG-CGCGAA-- 76190 | ||||| ||| | |||| |||| ||| | ||||| || | | | ||||| Sbjct 221780 CACGCAATCTGAACAAAATCATCGACATAAACTACTATCCGGT---GCCGGAGGCGAAGC 221724 Query 76191 AGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTA 76250 || || ||||| ||||| || || ||| | ||||| || || | || |||| || | Sbjct 221723 GTTCCAACATGCGCCACAGGCCCATCGGTATCGGTGTGCAGGGCATGGCCGATGCGTTCA 221664 Query 76251 TTTTGTGCCGCTACGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTG 76310 |||| ||||| ||| || || || ||| | || ||||| | || |||| Sbjct 221663 TTTTAATGCGCTATCCATACGAAAGCGAAGAGGCCCAAAAGCTGAATCAACAAATATTTG 221604 Query 76311 AAACCATGTATCACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCT 76370 ||||||| || | | | | ||||| || || || |||||||||| | | ||| | | Sbjct 221603 AAACCATCTACTATGGAGCACTGGAAGCAAGCTGCGAATTGGCTGCACGGGACGGTCCAT 221544 Query 76371 ATGAGACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAG 76430 | ||||| | ||| |||| ||| | | | | || || || |||| || |||||| | Sbjct 221543 ACGAGACGTATGAAGGTTGTCCAGTGAGCAAGGGTGTCCTACAGTACGAAATGTGGAACA 221484 Query 76431 GTGAAACCAAGCTCAACTACG--ACTGGGATGTTCTCAAGGAACGCAT--CAAGGAGAAG 76486 ||| | | | | || | ||||| | | ||||| || ||| || | Sbjct 221483 AAGAACCGA--CGGATCTGTGGAACTGGACAGAGTTGAAGGAGAAGATTGCAA--AGCAC 221428 Query 76487 GGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTG 76546 ||| |||||||| || || ||||||| ||||| ||||| || || |||||||| ||| Sbjct 221427 GGTATTCGTAACTCGCTACTGCTGGCACCGATGCCGACAGCTTCGACGGCACAAATATTG 221368 Query 76547 GGTAATAATGAATGCTTTGAACCATACACAACAAACATCTAC 76588 || || ||||| | ||| || || ||||| | ||| | ||| Sbjct 221367 GGCAACAATGAGTCCTTCGAGCCGTACACGTCGAACGTTTAC 221326 >seq1171 Length=2124680 Score = 95.1 bits (104), Expect = 1e-14 Identities = 322/488 (66%), Gaps = 23/488 (5%) Strand=Plus/Minus Query 175217 AAGAT-GAACTTGAAGAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGT 175275 ||||| ||| || ||| ||||| |||||||||| | ||| | ||| | | Sbjct 1106013 AAGATCGAAATTATGGAGTTTGTGAATTTTCTCAAAAACCCCCAACAATACATCGATCTC 1105954 Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 || || || || ||| ||||||| | | |||| |||||||||||| || || | Sbjct 1105953 GGAGCAAAAATTCCCAAAGGCGCCATGTTAACGGGCCCGCCAGGTACGGGCAAAACGTTG 1105894 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATC-CAGTGCTCTGCCGCAAA 175394 ||||| || | || |||||| |||| || || ||||| | ||| || | | | Sbjct 1105893 CTCGCAAAGGCAACTGCCGGTGAAGCAAACGTACCCTTCATTACCGTG-TCCGGTTCGGA 1105835 Query 175395 CTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGC 175454 ||| |||| |||||||||||||| || | | || ||||| | |||| ||| || Sbjct 1105834 GTTTTTGGAAATGTTTGTTGGTGTAGGACCGTCGCGTGTACGCGACATGTTTGCAATGGC 1105775 Query 175455 CCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACG 175514 ||| |||| ||| || ||| | ||||| || || || ||||| || || | | | Sbjct 1105774 ACGCAAAAACGCACCGTGCATTCTATTCATCGACGAAATCGATGCCGTTGG-ACGAA--- 1105719 Query 175515 CAGCGCTGGTGG--TATGC--CAGC--AAATGACGAGAGAGAACAAACAATTAATCAACT 175568 |||| |||||| | || | || | || ||| |||| | || |||||||||| Sbjct 1105718 -AGCG-TGGTGGCAAAAGCTTCGGCGGACATTCGGAGCAAGAAAATACCCTTAATCAACT 1105661 Query 175569 ACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGC-GGCC---A 175624 | ||||||||||| ||| ||| | || || ||||| || ||| |||| | Sbjct 1105660 GTTGGTGGAGATGGATGGATTTAACACT---ACAACCAATGTGG-TAGTGCTGGCCGCGA 1105605 Query 175625 CTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGATCGCAAGA 175684 | || || || || ||||| || | || || | || ||||| || || ||||| ||| Sbjct 1105604 CGAACCGTGTTGACATCCTCGACAAGGCACTGTTACGACCGGGACGCTTCGATCGTCAGA 1105545 Query 175685 TCCAAGTG 175692 || | ||| Sbjct 1105544 TCTACGTG 1105537 >seq628 Length=1452984 Score = 82.4 bits (90), Expect = 9e-11 Identities = 114/160 (71%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 65070 CTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATT 65129 ||| | |||||| | | |||||||| ||| || |||||||||||| ||| || Sbjct 708347 CTTTGGCGAGCGTGTCGTCGCGTTTGCTGCTGTCGAAGGTATCTTCTTCAGCGGTAGCTT 708288 Query 65130 CTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGA 65189 ||| |||| ||| |||||||||| || || ||||| || || |||||| || || Sbjct 708287 TGCCGCCATTTTCTGGCTGAAGAAGCGTGGACTGATGCCGGGACTTACCTTCTCGAACGA 708228 Query 65190 ACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCC 65229 || ||||| || ||||| || || ||| || |||||| Sbjct 708227 GCTGATTTCGCGTGATGAAGGACTACACTGTGACTTTGCC 708188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596559219688960