Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq949 87.8 4e-12 >seq949 Length=1771395 Score = 87.8 bits (96), Expect = 4e-12 Identities = 161/235 (69%), Gaps = 1/235 (0%) Strand=Plus/Plus Query 192306 AATA-CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAAT 192364 |||| ||||| | ||||| | || | ||| | ||| | || || ||||| || | Sbjct 446665 AATATCCACCACGTAGACGAAGGACCAGATGGAGAGTCGATTCCTTCTGAATATTGTAGT 446724 Query 192365 CAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAG 192424 | || | || || |||| ||||| || || ||||||||||| | | ||| ||||| | Sbjct 446725 CCGACAGCGTACGGCCATCTTCCAACTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTG 446784 Query 192425 GTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATT 192484 |||| ||||| || ||||| || || || || ||||| || | ||| || | | Sbjct 446785 GTGGGATTCCCTCCTTATCCTGAATCTTGGCCTTAACATTCTCGATGGTATCGGATGGCT 446844 Query 192485 CTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | || || || || || || || ||||||| || || | || ||||||||||| Sbjct 446845 CAACCTCCAGGGTGATCGTCTTTCCAGTTAGAGTCTTGACGAAGATCTGCATTTT 446899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984462441799200