Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28]
1,392 sequences; 225,223,604 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq1171 120 9e-22
seq531 102 2e-16
seq872 93.3 1e-13
>seq1171
Length=2124680
Score = 120 bits (132), Expect = 9e-22
Identities = 217/315 (69%), Gaps = 2/315 (1%)
Strand=Plus/Plus
Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089
||||| ||||| |||||||| ||||| | | ||||| | |||| | || ||||||
Sbjct 1105724 CCAACGGCATCGATTTCGTCGATGAATAGAATGCACGGTGCGTTTTTGCGTGCCATTGCA 1105783
Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149
|| | || | |||||| || | ||| | ||||||| ||||||| | ||| || ||| ||
Sbjct 1105784 AACATGTCGCGTACACGCGACGGTCCTACACCAACAAACATTTCCAAAAACTCCGAACCG 1105843
Query 289150 GATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTA 289209
|| || |||||| | ||| |||||||| || || |||| | || || | || ||
Sbjct 1105844 GACACGGTAATGAAGGGTACGTTTGCTTCACCGGCAGTTGCCTTTGCGAGCAACGTTTTG 1105903
Query 289210 CCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTA 289269
|| || || || || ||| ||| | | || || || | |||||| || | |
Sbjct 1105904 CCCGTACCTGGCGGGCCCGTTAACATGGCGCCTTTGGGAATTTTTGCTCCGAGATCGATG 1105963
Query 289270 TATTTCTCAGGGCTCTTTA-AAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATC 289328
|||| | ||| | || | ||||||| |||| ||| || ||| || ||||| ||
Sbjct 1105964 TATTGTTGGGGGTTTTTGAGAAAATTC-ACAAACTCCATAATTTCGATCTTGGCCTCCTC 1106022
Query 289329 ACATCCTGCTACATC 289343
||||||||||||||
Sbjct 1106023 GCATCCTGCTACATC 1106037
>seq531
Length=335862
Score = 102 bits (112), Expect = 2e-16
Identities = 182/263 (69%), Gaps = 6/263 (2%)
Strand=Plus/Minus
Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634
|||||| ||| || ||||||||||| || ||||||||| | ||||| ||||| |||
Sbjct 209850 TCCATAGCCTTTATCAAACGACGCTGGATGTAACCAGTTTCGGCGGTTTTGACAGCAGTA 209791
Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCC 302694
|| || ||||| ||||||| |||||||| || ||| | | || |||| | ||
Sbjct 209790 TCGATCAGACCTTCACGACCGCCCATAGCGTGAAAGTAGAATTCAGTCGGTGTCAAACCG 209731
Query 302695 CCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGTA 302751
||| | ||| | || ||||| || || | || || || |||| || || ||
Sbjct 209730 GCAAGGTACGAGTTTTCCACGAAGCCTCGTGATTCAGGACCGTAATCATC---TTTAATA 209674
Query 302752 AAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGC 302811
||||| || || || | ||| | ||| | || |||||||| || || |||||||||
Sbjct 209673 AAGTGGGGTAGTGTGCGTTTCCGGAAACCGAACGGAATACGCTTACCTTCTACGTTCTGC 209614
Query 302812 TGTCCCAGGCACGAAATCATCTG 302834
||||| | || | ||| | |||
Sbjct 209613 TGTCCGACACAAGCAATAACCTG 209591
Score = 84.2 bits (92), Expect = 6e-11
Identities = 116/158 (73%), Gaps = 11/158 (7%)
Strand=Plus/Minus
Query 303628 TGGGGCATATGTAAATTCATCTCATCACCGTCAAAATCAGCATTATACGGCTTTGTGTCC 303687
|| |||| || | |||||||||||| ||||| ||||| ||||| ||||| || |
Sbjct 208698 TGTGGCACGTGCAGATTCATCTCATCTCCGTCGAAATCGGCATTGTACGGTGAGGTA-CA 208640
Query 303688 GCAACG-TTCATCCGGAAAGT--ATCACC-CTGCATCATAACACGGGCTTTATGACACAT 303743
|| | | |||||||| ||||| | ||| | ||| | | ||||| ||| | |||
Sbjct 208639 GCTAAGATTCATCCGAAAAGTGGACCACGGCAGCACCTTCACACG------ATGCCCCAT 208586
Query 303744 CATAGACATTCTGTGTAGAGTTGGCTGACGATTGAAAA 303781
|||| |||| ||||||| || ||||||||||||||||
Sbjct 208585 CATACTCATTTTGTGTAGCGTGGGCTGACGATTGAAAA 208548
>seq872
Length=887634
Score = 93.3 bits (102), Expect = 1e-13
Identities = 130/180 (72%), Gaps = 2/180 (1%)
Strand=Plus/Plus
Query 155568 TTTACAAACATACCAAGACCAATAGACGCCAGATTACATACCGCAGTCTCCTTGT-CGTC 155626
||||| ||||| || | || || |||||||| || |||||| | || | | || |
Sbjct 221834 TTTACGAACATGTTCAGTGCGATCGAGGCCAGATTGCAAACCGCAATTTCATCCTTCGAC 221893
Query 155627 GCTGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTG 155686
| ||| || ||||||||| ||||| |||||||| ||| |||||||| | |||| |||
Sbjct 221894 GA-GTACTCCACAATCTCAGTGCACAAGTTAGAACACTTAATGGTGCCAATGTTCTGCTG 221952
Query 155687 GTTAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTG 155746
||| ||| | ||| || ||||||||||| || || || || || || |||| |||
Sbjct 221953 GTTGCTTTTGCGGTTGCATGCATCCTTGTACAGCATATACGGTACGCCCGTTTCCACCTG 222012
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471791350133104
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |