Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1171 120 9e-22 seq531 102 2e-16 seq872 93.3 1e-13 >seq1171 Length=2124680 Score = 120 bits (132), Expect = 9e-22 Identities = 217/315 (69%), Gaps = 2/315 (1%) Strand=Plus/Plus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 ||||| ||||| |||||||| ||||| | | ||||| | |||| | || |||||| Sbjct 1105724 CCAACGGCATCGATTTCGTCGATGAATAGAATGCACGGTGCGTTTTTGCGTGCCATTGCA 1105783 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 || | || | |||||| || | ||| | ||||||| ||||||| | ||| || ||| || Sbjct 1105784 AACATGTCGCGTACACGCGACGGTCCTACACCAACAAACATTTCCAAAAACTCCGAACCG 1105843 Query 289150 GATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTA 289209 || || |||||| | ||| |||||||| || || |||| | || || | || || Sbjct 1105844 GACACGGTAATGAAGGGTACGTTTGCTTCACCGGCAGTTGCCTTTGCGAGCAACGTTTTG 1105903 Query 289210 CCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTA 289269 || || || || || ||| ||| | | || || || | |||||| || | | Sbjct 1105904 CCCGTACCTGGCGGGCCCGTTAACATGGCGCCTTTGGGAATTTTTGCTCCGAGATCGATG 1105963 Query 289270 TATTTCTCAGGGCTCTTTA-AAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATC 289328 |||| | ||| | || | ||||||| |||| ||| || ||| || ||||| || Sbjct 1105964 TATTGTTGGGGGTTTTTGAGAAAATTC-ACAAACTCCATAATTTCGATCTTGGCCTCCTC 1106022 Query 289329 ACATCCTGCTACATC 289343 |||||||||||||| Sbjct 1106023 GCATCCTGCTACATC 1106037 >seq531 Length=335862 Score = 102 bits (112), Expect = 2e-16 Identities = 182/263 (69%), Gaps = 6/263 (2%) Strand=Plus/Minus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| ||| || ||||||||||| || ||||||||| | ||||| ||||| ||| Sbjct 209850 TCCATAGCCTTTATCAAACGACGCTGGATGTAACCAGTTTCGGCGGTTTTGACAGCAGTA 209791 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCC 302694 || || ||||| ||||||| |||||||| || ||| | | || |||| | || Sbjct 209790 TCGATCAGACCTTCACGACCGCCCATAGCGTGAAAGTAGAATTCAGTCGGTGTCAAACCG 209731 Query 302695 CCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGTA 302751 ||| | ||| | || ||||| || || | || || || |||| || || || Sbjct 209730 GCAAGGTACGAGTTTTCCACGAAGCCTCGTGATTCAGGACCGTAATCATC---TTTAATA 209674 Query 302752 AAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGC 302811 ||||| || || || | ||| | ||| | || |||||||| || || ||||||||| Sbjct 209673 AAGTGGGGTAGTGTGCGTTTCCGGAAACCGAACGGAATACGCTTACCTTCTACGTTCTGC 209614 Query 302812 TGTCCCAGGCACGAAATCATCTG 302834 ||||| | || | ||| | ||| Sbjct 209613 TGTCCGACACAAGCAATAACCTG 209591 Score = 84.2 bits (92), Expect = 6e-11 Identities = 116/158 (73%), Gaps = 11/158 (7%) Strand=Plus/Minus Query 303628 TGGGGCATATGTAAATTCATCTCATCACCGTCAAAATCAGCATTATACGGCTTTGTGTCC 303687 || |||| || | |||||||||||| ||||| ||||| ||||| ||||| || | Sbjct 208698 TGTGGCACGTGCAGATTCATCTCATCTCCGTCGAAATCGGCATTGTACGGTGAGGTA-CA 208640 Query 303688 GCAACG-TTCATCCGGAAAGT--ATCACC-CTGCATCATAACACGGGCTTTATGACACAT 303743 || | | |||||||| ||||| | ||| | ||| | | ||||| ||| | ||| Sbjct 208639 GCTAAGATTCATCCGAAAAGTGGACCACGGCAGCACCTTCACACG------ATGCCCCAT 208586 Query 303744 CATAGACATTCTGTGTAGAGTTGGCTGACGATTGAAAA 303781 |||| |||| ||||||| || |||||||||||||||| Sbjct 208585 CATACTCATTTTGTGTAGCGTGGGCTGACGATTGAAAA 208548 >seq872 Length=887634 Score = 93.3 bits (102), Expect = 1e-13 Identities = 130/180 (72%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 155568 TTTACAAACATACCAAGACCAATAGACGCCAGATTACATACCGCAGTCTCCTTGT-CGTC 155626 ||||| ||||| || | || || |||||||| || |||||| | || | | || | Sbjct 221834 TTTACGAACATGTTCAGTGCGATCGAGGCCAGATTGCAAACCGCAATTTCATCCTTCGAC 221893 Query 155627 GCTGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTG 155686 | ||| || ||||||||| ||||| |||||||| ||| |||||||| | |||| ||| Sbjct 221894 GA-GTACTCCACAATCTCAGTGCACAAGTTAGAACACTTAATGGTGCCAATGTTCTGCTG 221952 Query 155687 GTTAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTG 155746 ||| ||| | ||| || ||||||||||| || || || || || || |||| ||| Sbjct 221953 GTTGCTTTTGCGGTTGCATGCATCCTTGTACAGCATATACGGTACGCCCGTTTCCACCTG 222012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471791350133104