Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28]
1,392 sequences; 225,223,604 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq1214 138 1e-26
seq1282 113 6e-19
>seq1214
Length=3694
Score = 138 bits (152), Expect = 1e-26
Identities = 154/206 (75%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| || ||| ||| || ||| || || ||||||||||| ||||||| ||
Sbjct 2856 GCTTGGCCAGCTCACCGGGCAGGAGCAGACGGACAGCGGTCTGGATTTCGCGCGATGTGA 2797
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
|||| ||||||||| |||||||||| ||| ||||| | | ||||| |||| |
Sbjct 2796 TCGTCGAGCGCTTGTTGTAGTGCGCCAGGCGGGATGCCTCCGCAGCAATGCGTTCGAAAA 2737
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
| ||||| ||||| |||||||| ||| | ||| |||||||| ||| ||||
Sbjct 2736 TATCGTTCACAAAGCTGTTCATGATGCTCATAGCCTTCGACGAGATGCCAGTGTCCGGGT 2677
Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548
|||| ||||| |||||||||||||||
Sbjct 2676 GCACTTGCTTCAGCACCTTGTAGATG 2651
>seq1282
Length=1948688
Score = 113 bits (124), Expect = 6e-19
Identities = 142/195 (73%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 1592106 AGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCA 1592165
||||||||||||| |||||| ||||||| || || | | || || ||| |
Sbjct 900834 AGAAGCGCACCGATGACATCAGCTCGTGGGATGCCGATTTCCTCAAGGTGGACCAGGGTA 900893
Query 1592166 CCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTG 1592225
|||| || ||| | || || || || ||||| | ||||| ||| ||||||||| |
Sbjct 900894 CCCTGTTCGAGCTTATACTGGCGGCAAACTATTTGGACATAAAGGGACTGCTCGATGTGA 900953
Query 1592226 GGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCT 1592285
||||||| | ||||| ||||||||||||||||| | || || ||||| ||||| || |
Sbjct 900954 CGTGCAAGACGGTGGCAAACATGATCAAGGGCAAAACCCCGGAAGAGATTCGCAAAACGT 901013
Query 1592286 TTAACATCAAGTACG 1592300
| ||||| ||| |||
Sbjct 901014 TCAACATTAAGAACG 901028
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107024965961264
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |