Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1214 138 1e-26 seq1282 113 6e-19 >seq1214 Length=3694 Score = 138 bits (152), Expect = 1e-26 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| || ||| || || ||||||||||| ||||||| || Sbjct 2856 GCTTGGCCAGCTCACCGGGCAGGAGCAGACGGACAGCGGTCTGGATTTCGCGCGATGTGA 2797 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 |||| ||||||||| |||||||||| ||| ||||| | | ||||| |||| | Sbjct 2796 TCGTCGAGCGCTTGTTGTAGTGCGCCAGGCGGGATGCCTCCGCAGCAATGCGTTCGAAAA 2737 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 | ||||| ||||| |||||||| ||| | ||| |||||||| ||| |||| Sbjct 2736 TATCGTTCACAAAGCTGTTCATGATGCTCATAGCCTTCGACGAGATGCCAGTGTCCGGGT 2677 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 |||| ||||| ||||||||||||||| Sbjct 2676 GCACTTGCTTCAGCACCTTGTAGATG 2651 >seq1282 Length=1948688 Score = 113 bits (124), Expect = 6e-19 Identities = 142/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 1592106 AGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCA 1592165 ||||||||||||| |||||| ||||||| || || | | || || ||| | Sbjct 900834 AGAAGCGCACCGATGACATCAGCTCGTGGGATGCCGATTTCCTCAAGGTGGACCAGGGTA 900893 Query 1592166 CCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTG 1592225 |||| || ||| | || || || || ||||| | ||||| ||| ||||||||| | Sbjct 900894 CCCTGTTCGAGCTTATACTGGCGGCAAACTATTTGGACATAAAGGGACTGCTCGATGTGA 900953 Query 1592226 GGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCT 1592285 ||||||| | ||||| ||||||||||||||||| | || || ||||| ||||| || | Sbjct 900954 CGTGCAAGACGGTGGCAAACATGATCAAGGGCAAAACCCCGGAAGAGATTCGCAAAACGT 901013 Query 1592286 TTAACATCAAGTACG 1592300 | ||||| ||| ||| Sbjct 901014 TCAACATTAAGAACG 901028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107024965961264