Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28]
1,392 sequences; 225,223,604 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq872 370 1e-97
seq575 143 2e-29
seq672 122 8e-23
seq949 96.9 3e-15
>seq872
Length=887634
Score = 370 bits (410), Expect = 1e-97
Identities = 1103/1677 (66%), Gaps = 47/1677 (3%)
Strand=Plus/Plus
Query 138153 TTTATCTACAGTAAACTTTATGGCATCAGCGGCTGGTTTCGTTCTCAGATAATACATTCC 138212
||| || || ||||| | ||||||| |||| ||||| || | ||| || ||||| ||
Sbjct 220939 TTTGTCCACCGTAAATTGGATGGCATTTACGGCCGGTTTGGTGCGCAGGTAGTACATGCC 220998
Query 138213 CGTTTTTAA-CCCATTTTCCCAGGCGTACATGTGTATCGAAGTGAGTAACGCGTAAGTCG 138271
||| |||| ||||| |||| | ||||| | || ||||| || || | || |||
Sbjct 220999 CGTCTTTAGTCCCATCTTCC-ACGCGTAGAAATGGATCGACGTCAGCTTGCCATAGTTCG 221057
Query 138272 GTTTCGCCAGAAATATGTTAAACGATTGACTCTGATCGATGAAAGCGCCTCGATCAATGG 138331
| | |||| ||||||||| ||||| ||||||||| || || || ||||| |
Sbjct 221058 GCTCGGCCACGTGTATGTTAAATGATTGTGACTGATCGATAAACGCTCCCCGATCGGCCG 221117
Query 138332 CCATGTTAATTAAATTTTTACTTTTCATCTCCCACACGGTCTTGTATAGATCACGAATAT 138391
|||| || || | |||| |||||||| || |||||||| || || || || |
Sbjct 221118 CCATTTTGATGGATGTTTTCACCGAGATCTCCCATACCGTCTTGTACAGGTCGCGGATTT 221177
Query 138392 GTCGCGGTATTGTTGCAATATTTTGAATGCTCCCGTTGGCCGCAATGATGCGATTTCTCA 138451
||||||| | |||| |||||||| |||||| | | |||| || |||
Sbjct 221178 CCTTTGGTATTGATTCAATGTTTTGAATCGATCCGTTGTTGGACAAGATGTTGTTCTTCA 221237
Query 138452 TGTCATCGTTGTACAGATTCAACTTGATCAAGTCGTTTATCAGATATCTGTTTATGACCT 138511
||||| | ||| | || | | | || | | ||||| ||| | ||||
Sbjct 221238 TGTCAAGATCCCACAAACCCATCGCTGTTAGATCTTGCAGCAGATGATGGTTCACCACCT 221297
Query 138512 GAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAACGATT 138571
| || || || | | || || || ||||| ||| ||| | ||||| || || |
Sbjct 221298 GGAACTCGCCCGATAGCACACGTCGGTTGTAAACGTTCGACGTGTACGGCTCGAAGGACT 221357
Query 138572 CGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGAGAAT 138631
| ||||| |||| || || ||||| | || |||||||| |||| || || || |
Sbjct 221358 CATTGTTGCCCAATATTTGTGCCGTCGAAGCTGTCGGCATCGGTGCCAGCAGTAGCGAGT 221417
Query 138632 TCCGTAAACCGTGAAGCTTG-ATTCGT-TCCTTGAGCGACGACCAGTCCCACAAATCGCT 138689
| || | |||||| ||| | || | ||||| | | | ||||| ||||| ||| |
Sbjct 221418 TACGAATACCGTGCT--TTGCAATCTTCTCCTTCAACTCTGTCCAGTTCCACAGATCCGT 221475
Query 138690 AGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCTTCGTA 138749
|||| |||||||||||| |||||||||| | ||| || | |||| ||||| ||
Sbjct 221476 CGGTTCTTTGTTCCACATTTCGTACTGTAGGACACCCTTGCTCACTGGACAACCTTCATA 221535
Query 138750 CGAATCGTATACACCAAACTCTTGC-GCCAACTCGTTGCTCGCCTCGAGCGCACCATAGT 138808
|| |||||| ||| | | ||| ||||| ||| ||| || || || || |||||||
Sbjct 221536 CGTCTCGTATGGACC-GTCCCGTGCAGCCAATTCGCAGCTTGCTTCCAGTGCTCCATAGT 221594
Query 138809 AAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGCATGC 138868
| || ||||| || || ||||| ||| | ||||||| |||| ||||| || ||
Sbjct 221595 AGATGGTTTCAAATATTTGTTGATTCAGCTTTTGGGCCTCTTCGCTTTCGTATGGATAGC 221654
Query 138869 GGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCA 138928
| | | ||||||| ||||||| || ||||| || | |||| || | |||||||
Sbjct 221655 GCATTAAAATGAACGCATCGGCCATGCCCTGCACACCGATACCGATGGGCCTGTGGCGCA 221714
Query 138929 GATTTG-ACGCTTTTGCGGCTTCG--ATAGGATAATAGTTTACATCGATGATTTTGTTTA 138985
|| | |||||| || || || | ||||| ||||||| |||||||||||||| |
Sbjct 221715 TGTTGGAACGCTT---CGCCTCCGGCACCGGATAGTAGTTTATGTCGATGATTTTGTTCA 221771
Query 138986 AATTTCGCACGACCACCTTAGTCGTATGCTTTAATCGTTCAAAATCGTATGTGCCCCCGT 139045
||| || || | ||| | || ||| | | | |||||||| || |
Sbjct 221772 GATTGCGTGTTACTATCTTGGCGACATCCTTCAGCTTTACGAAATCGTACGTCC------ 221825
Query 139046 TGTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACCGCCA 139105
| ||| || | || || |||| | |||||||| | ||||| ||||| |
Sbjct 221826 TATCG--GA----TTTTACGAACATGTTCAGTGCGATCGAGGCCAGATTGCAAACCGCAA 221879
Query 139106 CTTCGT-CGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTA 139164
||| | | | || ||| || ||||| || | ||||| ||| |||||| || ||
Sbjct 221880 TTTCATCCTTCGACG-AGTACTCCACAATCTCAGTGCACAAGTTAGAACACTTAATGGTG 221938
Query 139165 CCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTG 139224
|| | || || || |||||||| ||||| || ||||| ||||| |||||||||||| |
Sbjct 221939 CCAATGTTCTGCTGGTTGCTTTTGCGGTTGCATGCATCCTTGTACAGCATATACGGTACG 221998
Query 139225 CCAGTTTCCACTTGTGTCTCTATAAT---GAATTTGAACAAGTCCCTAGCTTGTATTTGA 139281
|| |||||||| || | || || || ||| |||| ||| || | | ||
Sbjct 221999 CCCGTTTCCACCTGCGATTCAATGATCGCGAA---CCACAAATCCTGTGCCTTCACCTGG 222055
Query 139282 CGCACGTAAAGTTCGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAG 139341
|| | || | | || |||||| ||| ||| | ||||| |||||| ||
Sbjct 222056 CGAATAAAACGACCCTCTTTCTCGTAGCCAGTGTACAGTGCCTCGAACTTTTCACCCCAG 222115
Query 139342 GCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTG 139401
||||| | | || |||| | || ||| ||||| || ||| | |||||||||
Sbjct 222116 CTATCAGACAAACCGGGACAATCGTGAGGGCACATTAGACTCCACATTTCGTTCGCCTCC 222175
Query 139402 ACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTA 139461
|| ||| |||||||||||||||||||||||| ||| | | || ||||| || |
Sbjct 222176 ACCCGCTCCATGAACAGATCCGGAATCCACAAGGCGTAAAACATGTCGCGTGCACGCACC 222235
Query 139462 TCTTCCGAACCCATGTTACGTTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGT 139521
|| || || |||| |||| | || || || || || ||| ||||||| |||
Sbjct 222236 TCCTCTTTGCCGGTGTTTTTCTTCAGATCCAGAAACTCGAACACATCACCGTGCCACGGT 222295
Query 139522 TCCAGATAGATGGCCATTGCGCCTTTCCG---TTTGCCACCTTGATCGACGTGTCGTACA 139578
|| || |||||||| | || || || |||||||| ||||| |||| ||| |
Sbjct 222296 TCGAGGTAGATGGCAAAAGCTCCCGGGCGCTTGTTGCCACCCTGATCCACGTATCGGGCC 222355
Query 139579 GCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGG 139638
| ||| ||| | ||||||| ||| ||| ||| ||| | | |||| || |||| |
Sbjct 222356 GTATTGTTGTACACGCGCAGCATTGGCACCAACCCGTTTGAAATTCCATTCGTGCCCGAG 222415
Query 139639 ATG---GGACTGTTGCGAGCTCGGACGTCA-TGTACATTGATGCCGATTCCGCCGCCAAA 139694
||| | || || || || || || || || || | || |||||||| || |
Sbjct 222416 ATGTACGTAC-CTTTCGCGC---GAATACAGTGCACGTTCAGCCCAATTCCGCCAGCAGA 222471
Query 139695 TTTGGATATTAAAACGCAATCGCGT-AATGTCTCGTATATACCTCTTATGCTGTCGTCCT 139753
||| || || | | || | || | | || ||||| |||||| ||||||||||||
Sbjct 222472 TTTTGAAATCAGTGCACACT-GCTTCAGCGTATCGTAGATACCTTCAATGCTGTCGTCCG 222530
Query 139754 GCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACA 139810
||| |||| || || || ||||| | ||||| ||| ||| | || |||||||
Sbjct 222531 ACATGGTGAGCAAGAAACAGGACGACAACTGCGGACGTTGCGTAGCCGCCGCAAACA 222587
>seq575
Length=281738
Score = 143 bits (158), Expect = 2e-29
Identities = 172/231 (74%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760
|||||||||||||| | ||||| || || ||||| |||||||| || || || || ||
Sbjct 23943 ACGATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACTATTACCCTTGAGGTCGAGCCC 24002
Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820
| || || | || | || || |||||||| || || || || || || || |||
Sbjct 24003 TCGGATACGATCGAGAATGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCGCCGGAT 24062
Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA-TGTCAGATTA 24879
|| || ||||||||||| ||||| || ||||||||||| | || ||| |||| || ||
Sbjct 24063 CAGCAGCGTTTGATCTTCGCCGGTAAGCAGCTGGAGGA-TGGACGCACACTGTCTGACTA 24121
Query 24880 TAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
||||||||| ||||| ||||| || || ||||| | || ||||||| ||
Sbjct 24122 TAACATTCAGAAGGAGTCGACCCTTCATCTGGTGCTTCGCCTGCGCGGTGG 24172
>seq672
Length=1102954
Score = 122 bits (134), Expect = 8e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||| || | ||||| || ||||| || || || || || || || || | |
Sbjct 391803 ATGCAGATTTTCGTGAAAACACTCACCGGCAAGACCATCACACTTGAGGTCGAGCCTTCG 391744
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | |||| || || |||||| || || || |||||||| || || |||||
Sbjct 391743 GACACGATCGAAAATGTGAAGGCAAAGATTCAGGATAAGGAAGGAATTCCCCCAGATCAG 391684
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| ||| | ||||| ||||| || |||||||||||| | | |||| || || |||
Sbjct 391683 CAGCGTCTCATCTTCGCCGGTAAGCAGCTGGAGGATGGCCGCACTCTGTCGGACTACAAC 391624
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
||||| |||||||| || || || ||||| ||||| | || || ||
Sbjct 391623 ATTCAGAAGGAATCTACCCTTCATCTGGTGCTGCGACTTCGTGGTGG 391577
>seq949
Length=1771395
Score = 96.9 bits (106), Expect = 3e-15
Identities = 149/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCA-C 24762
||||||||||| | || || ||||| || || || || || || || || || |||| |
Sbjct 446896 ATGCAGATCTTCGTCAAGACTCTAACTGGAAAGACGATCACCCTGGAGGTTGA-GCCATC 446838
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
||| || | || | || || ||||| || || || || ||||| || || |||||
Sbjct 446837 CGATACCATCGAGAATGTTAAGGCCAAGATTCAGGATAAGGAGGGAATCCCACCAGATCA 446778
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
|| ||| |||||||||| || || ||| |||| ||| | | |||| || || ||
Sbjct 446777 GCAGCGTCTGATCTTTGCTGGCAAGCAGTTGGAAGATGGCCGTACGCTGTCGGACTACAA 446718
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912
||||| ||||||||||| || || ||||
Sbjct 446717 TATTCAGAAGGAATCGACTCTCCATCTGGT 446688
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449889771781760
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