Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq872 370 1e-97 seq575 143 2e-29 seq672 122 8e-23 seq949 96.9 3e-15 >seq872 Length=887634 Score = 370 bits (410), Expect = 1e-97 Identities = 1103/1677 (66%), Gaps = 47/1677 (3%) Strand=Plus/Plus Query 138153 TTTATCTACAGTAAACTTTATGGCATCAGCGGCTGGTTTCGTTCTCAGATAATACATTCC 138212 ||| || || ||||| | ||||||| |||| ||||| || | ||| || ||||| || Sbjct 220939 TTTGTCCACCGTAAATTGGATGGCATTTACGGCCGGTTTGGTGCGCAGGTAGTACATGCC 220998 Query 138213 CGTTTTTAA-CCCATTTTCCCAGGCGTACATGTGTATCGAAGTGAGTAACGCGTAAGTCG 138271 ||| |||| ||||| |||| | ||||| | || ||||| || || | || ||| Sbjct 220999 CGTCTTTAGTCCCATCTTCC-ACGCGTAGAAATGGATCGACGTCAGCTTGCCATAGTTCG 221057 Query 138272 GTTTCGCCAGAAATATGTTAAACGATTGACTCTGATCGATGAAAGCGCCTCGATCAATGG 138331 | | |||| ||||||||| ||||| ||||||||| || || || ||||| | Sbjct 221058 GCTCGGCCACGTGTATGTTAAATGATTGTGACTGATCGATAAACGCTCCCCGATCGGCCG 221117 Query 138332 CCATGTTAATTAAATTTTTACTTTTCATCTCCCACACGGTCTTGTATAGATCACGAATAT 138391 |||| || || | |||| |||||||| || |||||||| || || || || | Sbjct 221118 CCATTTTGATGGATGTTTTCACCGAGATCTCCCATACCGTCTTGTACAGGTCGCGGATTT 221177 Query 138392 GTCGCGGTATTGTTGCAATATTTTGAATGCTCCCGTTGGCCGCAATGATGCGATTTCTCA 138451 ||||||| | |||| |||||||| |||||| | | |||| || ||| Sbjct 221178 CCTTTGGTATTGATTCAATGTTTTGAATCGATCCGTTGTTGGACAAGATGTTGTTCTTCA 221237 Query 138452 TGTCATCGTTGTACAGATTCAACTTGATCAAGTCGTTTATCAGATATCTGTTTATGACCT 138511 ||||| | ||| | || | | | || | | ||||| ||| | |||| Sbjct 221238 TGTCAAGATCCCACAAACCCATCGCTGTTAGATCTTGCAGCAGATGATGGTTCACCACCT 221297 Query 138512 GAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAACGATT 138571 | || || || | | || || || ||||| ||| ||| | ||||| || || | Sbjct 221298 GGAACTCGCCCGATAGCACACGTCGGTTGTAAACGTTCGACGTGTACGGCTCGAAGGACT 221357 Query 138572 CGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGAGAAT 138631 | ||||| |||| || || ||||| | || |||||||| |||| || || || | Sbjct 221358 CATTGTTGCCCAATATTTGTGCCGTCGAAGCTGTCGGCATCGGTGCCAGCAGTAGCGAGT 221417 Query 138632 TCCGTAAACCGTGAAGCTTG-ATTCGT-TCCTTGAGCGACGACCAGTCCCACAAATCGCT 138689 | || | |||||| ||| | || | ||||| | | | ||||| ||||| ||| | Sbjct 221418 TACGAATACCGTGCT--TTGCAATCTTCTCCTTCAACTCTGTCCAGTTCCACAGATCCGT 221475 Query 138690 AGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCTTCGTA 138749 |||| |||||||||||| |||||||||| | ||| || | |||| ||||| || Sbjct 221476 CGGTTCTTTGTTCCACATTTCGTACTGTAGGACACCCTTGCTCACTGGACAACCTTCATA 221535 Query 138750 CGAATCGTATACACCAAACTCTTGC-GCCAACTCGTTGCTCGCCTCGAGCGCACCATAGT 138808 || |||||| ||| | | ||| ||||| ||| ||| || || || || ||||||| Sbjct 221536 CGTCTCGTATGGACC-GTCCCGTGCAGCCAATTCGCAGCTTGCTTCCAGTGCTCCATAGT 221594 Query 138809 AAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGCATGC 138868 | || ||||| || || ||||| ||| | ||||||| |||| ||||| || || Sbjct 221595 AGATGGTTTCAAATATTTGTTGATTCAGCTTTTGGGCCTCTTCGCTTTCGTATGGATAGC 221654 Query 138869 GGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCA 138928 | | | ||||||| ||||||| || ||||| || | |||| || | ||||||| Sbjct 221655 GCATTAAAATGAACGCATCGGCCATGCCCTGCACACCGATACCGATGGGCCTGTGGCGCA 221714 Query 138929 GATTTG-ACGCTTTTGCGGCTTCG--ATAGGATAATAGTTTACATCGATGATTTTGTTTA 138985 || | |||||| || || || | ||||| ||||||| |||||||||||||| | Sbjct 221715 TGTTGGAACGCTT---CGCCTCCGGCACCGGATAGTAGTTTATGTCGATGATTTTGTTCA 221771 Query 138986 AATTTCGCACGACCACCTTAGTCGTATGCTTTAATCGTTCAAAATCGTATGTGCCCCCGT 139045 ||| || || | ||| | || ||| | | | |||||||| || | Sbjct 221772 GATTGCGTGTTACTATCTTGGCGACATCCTTCAGCTTTACGAAATCGTACGTCC------ 221825 Query 139046 TGTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACCGCCA 139105 | ||| || | || || |||| | |||||||| | ||||| ||||| | Sbjct 221826 TATCG--GA----TTTTACGAACATGTTCAGTGCGATCGAGGCCAGATTGCAAACCGCAA 221879 Query 139106 CTTCGT-CGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTA 139164 ||| | | | || ||| || ||||| || | ||||| ||| |||||| || || Sbjct 221880 TTTCATCCTTCGACG-AGTACTCCACAATCTCAGTGCACAAGTTAGAACACTTAATGGTG 221938 Query 139165 CCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTG 139224 || | || || || |||||||| ||||| || ||||| ||||| |||||||||||| | Sbjct 221939 CCAATGTTCTGCTGGTTGCTTTTGCGGTTGCATGCATCCTTGTACAGCATATACGGTACG 221998 Query 139225 CCAGTTTCCACTTGTGTCTCTATAAT---GAATTTGAACAAGTCCCTAGCTTGTATTTGA 139281 || |||||||| || | || || || ||| |||| ||| || | | || Sbjct 221999 CCCGTTTCCACCTGCGATTCAATGATCGCGAA---CCACAAATCCTGTGCCTTCACCTGG 222055 Query 139282 CGCACGTAAAGTTCGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAG 139341 || | || | | || |||||| ||| ||| | ||||| |||||| || Sbjct 222056 CGAATAAAACGACCCTCTTTCTCGTAGCCAGTGTACAGTGCCTCGAACTTTTCACCCCAG 222115 Query 139342 GCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTG 139401 ||||| | | || |||| | || ||| ||||| || ||| | ||||||||| Sbjct 222116 CTATCAGACAAACCGGGACAATCGTGAGGGCACATTAGACTCCACATTTCGTTCGCCTCC 222175 Query 139402 ACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTA 139461 || ||| |||||||||||||||||||||||| ||| | | || ||||| || | Sbjct 222176 ACCCGCTCCATGAACAGATCCGGAATCCACAAGGCGTAAAACATGTCGCGTGCACGCACC 222235 Query 139462 TCTTCCGAACCCATGTTACGTTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGT 139521 || || || |||| |||| | || || || || || ||| ||||||| ||| Sbjct 222236 TCCTCTTTGCCGGTGTTTTTCTTCAGATCCAGAAACTCGAACACATCACCGTGCCACGGT 222295 Query 139522 TCCAGATAGATGGCCATTGCGCCTTTCCG---TTTGCCACCTTGATCGACGTGTCGTACA 139578 || || |||||||| | || || || |||||||| ||||| |||| ||| | Sbjct 222296 TCGAGGTAGATGGCAAAAGCTCCCGGGCGCTTGTTGCCACCCTGATCCACGTATCGGGCC 222355 Query 139579 GCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGG 139638 | ||| ||| | ||||||| ||| ||| ||| ||| | | |||| || |||| | Sbjct 222356 GTATTGTTGTACACGCGCAGCATTGGCACCAACCCGTTTGAAATTCCATTCGTGCCCGAG 222415 Query 139639 ATG---GGACTGTTGCGAGCTCGGACGTCA-TGTACATTGATGCCGATTCCGCCGCCAAA 139694 ||| | || || || || || || || || || | || |||||||| || | Sbjct 222416 ATGTACGTAC-CTTTCGCGC---GAATACAGTGCACGTTCAGCCCAATTCCGCCAGCAGA 222471 Query 139695 TTTGGATATTAAAACGCAATCGCGT-AATGTCTCGTATATACCTCTTATGCTGTCGTCCT 139753 ||| || || | | || | || | | || ||||| |||||| |||||||||||| Sbjct 222472 TTTTGAAATCAGTGCACACT-GCTTCAGCGTATCGTAGATACCTTCAATGCTGTCGTCCG 222530 Query 139754 GCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACA 139810 ||| |||| || || || ||||| | ||||| ||| ||| | || ||||||| Sbjct 222531 ACATGGTGAGCAAGAAACAGGACGACAACTGCGGACGTTGCGTAGCCGCCGCAAACA 222587 >seq575 Length=281738 Score = 143 bits (158), Expect = 2e-29 Identities = 172/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 |||||||||||||| | ||||| || || ||||| |||||||| || || || || || Sbjct 23943 ACGATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACTATTACCCTTGAGGTCGAGCCC 24002 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | || || | || | || || |||||||| || || || || || || || ||| Sbjct 24003 TCGGATACGATCGAGAATGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCGCCGGAT 24062 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA-TGTCAGATTA 24879 || || ||||||||||| ||||| || ||||||||||| | || ||| |||| || || Sbjct 24063 CAGCAGCGTTTGATCTTCGCCGGTAAGCAGCTGGAGGA-TGGACGCACACTGTCTGACTA 24121 Query 24880 TAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||||||| ||||| ||||| || || ||||| | || ||||||| || Sbjct 24122 TAACATTCAGAAGGAGTCGACCCTTCATCTGGTGCTTCGCCTGCGCGGTGG 24172 >seq672 Length=1102954 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | ||||| || ||||| || || || || || || || || | | Sbjct 391803 ATGCAGATTTTCGTGAAAACACTCACCGGCAAGACCATCACACTTGAGGTCGAGCCTTCG 391744 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || |||||| || || || |||||||| || || ||||| Sbjct 391743 GACACGATCGAAAATGTGAAGGCAAAGATTCAGGATAAGGAAGGAATTCCCCCAGATCAG 391684 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||| ||||| || |||||||||||| | | |||| || || ||| Sbjct 391683 CAGCGTCTCATCTTCGCCGGTAAGCAGCTGGAGGATGGCCGCACTCTGTCGGACTACAAC 391624 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| |||||||| || || || ||||| ||||| | || || || Sbjct 391623 ATTCAGAAGGAATCTACCCTTCATCTGGTGCTGCGACTTCGTGGTGG 391577 >seq949 Length=1771395 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCA-C 24762 ||||||||||| | || || ||||| || || || || || || || || || |||| | Sbjct 446896 ATGCAGATCTTCGTCAAGACTCTAACTGGAAAGACGATCACCCTGGAGGTTGA-GCCATC 446838 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||| || | || | || || ||||| || || || || ||||| || || ||||| Sbjct 446837 CGATACCATCGAGAATGTTAAGGCCAAGATTCAGGATAAGGAGGGAATCCCACCAGATCA 446778 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| |||||||||| || || ||| |||| ||| | | |||| || || || Sbjct 446777 GCAGCGTCTGATCTTTGCTGGCAAGCAGTTGGAAGATGGCCGTACGCTGTCGGACTACAA 446718 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||| ||||||||||| || || |||| Sbjct 446717 TATTCAGAAGGAATCGACTCTCCATCTGGT 446688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449889771781760