Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28]
1,392 sequences; 225,223,604 total letters
Query= NC_021924.1
Length=129052
Score E
Sequences producing significant alignments: (Bits) Value
seq516 132 4e-26
seq672 86.0 5e-12
>seq516
Length=331534
Score = 132 bits (146), Expect = 4e-26
Identities = 153/206 (74%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 34438 TCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGA 34497
|||| || |||||||| || || ||||| ||||||||||| ||||| || | || |||
Sbjct 308796 TCGAATTGAGTTTGCGCTCCAAGTTCGCAACCGAAGTACTTCGTCGGATAGGTTGCAGGA 308737
Query 34498 CGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCC 34557
|| |||| || | || | |||| |||||| ||||| || || || ||||| || ||
Sbjct 308736 CGACCAATAGCTCTAGCCACCTCGGCCATGTTCACGATCACCGTTTTAATGCCATTTCCT 308677
Query 34558 TTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCCACA 34617
|| || || ||||| || |||||| ||||| ||||| |||||||| || | ||||
Sbjct 308676 TTACCCTCCACCTTTGCATTGATGCGAGGCATCTTGTAACGGTAGAAGATATCGGTCACA 308617
Query 34618 TTGCGGTTAACGTTCACAGTCCCCAT 34643
|| || || |||||||| || ||||
Sbjct 308616 TTACGATTCACGTTCACGGTAGCCAT 308591
Score = 118 bits (130), Expect = 9e-22
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 34203 CGGCGGGTTTTTCAGTATGAAGGTGTTGAGCTTATGCGAGAAGTGTAGCGTGCCGTGATA 34262
||| ||||| || | ||||| ||||| | ||| || | | |||| |||||| |
Sbjct 309106 CGGTGGGTTCTTGATAATGAACGTGTTCACCTTGTGGTTCACATCGAGCGGTCCGTGAAA 309047
Query 34263 ACCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGACACGATGAGCTCAGT 34322
|||||| || ||||| ||||| |||| | ||| || | || || | || || ||
Sbjct 309046 ACCGCACGCCTTGCAACCCTGCGAGATGGTACCCTTCTTCGACGATACCAGCAGATCCGT 308987
Query 34323 CTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCAGGTC 34382
|||||| || || || |||||||| | || ||||||||||||||||| || ||||| ||
Sbjct 308986 CTCCGGATTATCGCACTCCGGACAAAGGACGAACTTGCGGATGAAACCGTCGAGCAGATC 308927
Query 34383 CTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTT 34430
||| | ||| | | ||||| || || || || ||||| ||||| ||
Sbjct 308926 CTGCAGCTTGGCAGCATCGTGCGAACCATTCACAATGAAGCGTTCATT 308879
>seq672
Length=1102954
Score = 86.0 bits (94), Expect = 5e-12
Identities = 157/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
||||| || || || ||||| | |||||||| ||||| || | || ||||||
Sbjct 391803 ATGCAGATTTTCGTGAAAACACTCACCGGCAAGACCATCACACTTGAGGTCGAGCCTTCG 391744
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
|| || ||| | || || |||||| || || ||||| | ||| |||||
Sbjct 391743 GACACGATCGAAAATGTGAAGGCAAAGATTCAGGATAAGGAAGGAATTCCCCCAGATCAG 391684
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
|| | || || | || ||||| ||||||||||||| | | || || |||| ||||||
Sbjct 391683 CAGCGTCTCATCTTCGCCGGTAAGCAGCTGGAGGATGGCCGCACTCTGTCGGACTACAAC 391624
Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAAA 110502
||||| || |||||||| | || ||||| | |||| || || || ||
Sbjct 391623 ATTCAGAAGGAATCTACCCTTCATCTGGTGCTGCGACTTCGTGGTGGTAA 391574
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 412834596142256
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |