Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq516 132 4e-26 seq672 86.0 5e-12 >seq516 Length=331534 Score = 132 bits (146), Expect = 4e-26 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 34438 TCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGA 34497 |||| || |||||||| || || ||||| ||||||||||| ||||| || | || ||| Sbjct 308796 TCGAATTGAGTTTGCGCTCCAAGTTCGCAACCGAAGTACTTCGTCGGATAGGTTGCAGGA 308737 Query 34498 CGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCC 34557 || |||| || | || | |||| |||||| ||||| || || || ||||| || || Sbjct 308736 CGACCAATAGCTCTAGCCACCTCGGCCATGTTCACGATCACCGTTTTAATGCCATTTCCT 308677 Query 34558 TTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCCACA 34617 || || || ||||| || |||||| ||||| ||||| |||||||| || | |||| Sbjct 308676 TTACCCTCCACCTTTGCATTGATGCGAGGCATCTTGTAACGGTAGAAGATATCGGTCACA 308617 Query 34618 TTGCGGTTAACGTTCACAGTCCCCAT 34643 || || || |||||||| || |||| Sbjct 308616 TTACGATTCACGTTCACGGTAGCCAT 308591 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34203 CGGCGGGTTTTTCAGTATGAAGGTGTTGAGCTTATGCGAGAAGTGTAGCGTGCCGTGATA 34262 ||| ||||| || | ||||| ||||| | ||| || | | |||| |||||| | Sbjct 309106 CGGTGGGTTCTTGATAATGAACGTGTTCACCTTGTGGTTCACATCGAGCGGTCCGTGAAA 309047 Query 34263 ACCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGACACGATGAGCTCAGT 34322 |||||| || ||||| ||||| |||| | ||| || | || || | || || || Sbjct 309046 ACCGCACGCCTTGCAACCCTGCGAGATGGTACCCTTCTTCGACGATACCAGCAGATCCGT 308987 Query 34323 CTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCAGGTC 34382 |||||| || || || |||||||| | || ||||||||||||||||| || ||||| || Sbjct 308986 CTCCGGATTATCGCACTCCGGACAAAGGACGAACTTGCGGATGAAACCGTCGAGCAGATC 308927 Query 34383 CTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTT 34430 ||| | ||| | | ||||| || || || || ||||| ||||| || Sbjct 308926 CTGCAGCTTGGCAGCATCGTGCGAACCATTCACAATGAAGCGTTCATT 308879 >seq672 Length=1102954 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || || ||||| | |||||||| ||||| || | || |||||| Sbjct 391803 ATGCAGATTTTCGTGAAAACACTCACCGGCAAGACCATCACACTTGAGGTCGAGCCTTCG 391744 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | || || |||||| || || ||||| | ||| ||||| Sbjct 391743 GACACGATCGAAAATGTGAAGGCAAAGATTCAGGATAAGGAAGGAATTCCCCCAGATCAG 391684 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | || ||||| ||||||||||||| | | || || |||| |||||| Sbjct 391683 CAGCGTCTCATCTTCGCCGGTAAGCAGCTGGAGGATGGCCGCACTCTGTCGGACTACAAC 391624 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAAA 110502 ||||| || |||||||| | || ||||| | |||| || || || || Sbjct 391623 ATTCAGAAGGAATCTACCCTTCATCTGGTGCTGCGACTTCGTGGTGGTAA 391574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412834596142256