Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28]
1,392 sequences; 225,223,604 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq1214 174 2e-37
seq1282 96.9 5e-14
seq567 96.9 5e-14
seq1224 95.1 2e-13
>seq1214
Length=3694
Score = 174 bits (192), Expect = 2e-37
Identities = 183/241 (76%), Gaps = 0/241 (0%)
Strand=Plus/Minus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
||||||||||||||||||| ||||| || || ||||||||| ||||||| || ||| |||
Sbjct 2895 TGTACTTGGTGACGGCCTTCGTACCTTCGGACACGGCGTGCTTGGCCAGCTCACCGGGCA 2836
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
|| ||| || || ||||||||||| ||||| | |||||| ||||||||| |
Sbjct 2835 GGAGCAGACGGACAGCGGTCTGGATTTCGCGCGATGTGATCGTCGAGCGCTTGTTGTAGT 2776
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
||||||||||| ||||| | | ||||| |||| || ||||| ||||| |||||
Sbjct 2775 GCGCCAGGCGGGATGCCTCCGCAGCAATGCGTTCGAAAATATCGTTCACAAAGCTGTTCA 2716
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709
|||| ||| | || |||||||| ||| |||||||| ||||| ||||||||||
Sbjct 2715 TGATGCTCATAGCCTTCGACGAGATGCCAGTGTCCGGGTGCACTTGCTTCAGCACCTTGT 2656
Query 1485710 A 1485710
|
Sbjct 2655 A 2655
>seq1282
Length=1948688
Score = 96.9 bits (106), Expect = 5e-14
Identities = 139/196 (71%), Gaps = 0/196 (0%)
Strand=Plus/Plus
Query 2035566 GACAAGCGCACCGACGACATTTCGCCGTGGGACAAGGCCTTTTGCGAGGTCGACCAACCC 2035625
|| ||||||||||| ||||| ||||||| | || | |||| |||||
Sbjct 900833 GAGAAGCGCACCGATGACATCAGCTCGTGGGATGCCGATTTCCTCAAGGTGGACCAGGGT 900892
Query 2035626 ACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTG 2035685
||||| || ||| | || || || || ||||| | ||||| ||| || |||||| ||
Sbjct 900893 ACCCTGTTCGAGCTTATACTGGCGGCAAACTATTTGGACATAAAGGGACTGCTCGATGTG 900952
Query 2035686 GGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACC 2035745
||||||||| ||||| ||| | ||||||||||| | || || || || ||||| ||
Sbjct 900953 ACGTGCAAGACGGTGGCAAACATGATCAAGGGCAAAACCCCGGAAGAGATTCGCAAAACG 901012
Query 2035746 TTTAACATCAAGTACG 2035761
|| ||||| ||| |||
Sbjct 901013 TTCAACATTAAGAACG 901028
>seq567
Length=268466
Score = 96.9 bits (106), Expect = 5e-14
Identities = 166/241 (69%), Gaps = 0/241 (0%)
Strand=Plus/Plus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
||||||| || || ||||| || ||||| || || |||||| | ||||| || || |||
Sbjct 232673 TGTACTTCGTCACAGCCTTCGTTCCCTCGGACACAGCGTGCTTTGCCAGCTCACCCGGCA 232732
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| || || || || ||||||||||| |||| |||||| |||||||||
Sbjct 232733 ACAGTAGTCGGACCGCCGTCTGGATCTCCCGGGACGTGATCGTCGAGCGCTTGTTGTAAT 232792
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
| |||| ||| || || | | || || |||| || ||||| || || |||||
Sbjct 232793 GGGCCAACCGGGACGCTTCCGCCGCAATCCGCTCGAAGATATCGTTCACGAAACTGTTCA 232852
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709
|||| ||| | || |||||||| ||||| || |||||||| |||||||| |
Sbjct 232853 TGATGCTCATAGCCTTCGACGAGATGCCGGTATCGGGATGGACCTGCTTCAGCACCTTAT 232912
Query 1485710 A 1485710
|
Sbjct 232913 A 232913
>seq1224
Length=3725
Score = 95.1 bits (104), Expect = 2e-13
Identities = 90/115 (78%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
||||||||||||||||||| || || || || ||||||||| ||||||| || || |||
Sbjct 121 TGTACTTGGTGACGGCCTTCGTGCCTTCGGACACGGCGTGCTTGGCCAGCTCACCAGGCA 62
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT 1485584
|| ||| || ||||| || ||||| ||||||| |||||| ||||||||
Sbjct 61 AGAGCAGACGGACGGCCGTTTGGATTTCGCGGGACGTGATCGTCGAACGCTTGTT 7
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7916098326611088
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |