Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1214 174 2e-37 seq1282 96.9 5e-14 seq567 96.9 5e-14 seq1224 95.1 2e-13 >seq1214 Length=3694 Score = 174 bits (192), Expect = 2e-37 Identities = 183/241 (76%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||||||||| ||||| || || ||||||||| ||||||| || ||| ||| Sbjct 2895 TGTACTTGGTGACGGCCTTCGTACCTTCGGACACGGCGTGCTTGGCCAGCTCACCGGGCA 2836 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || ||| || || ||||||||||| ||||| | |||||| ||||||||| | Sbjct 2835 GGAGCAGACGGACAGCGGTCTGGATTTCGCGCGATGTGATCGTCGAGCGCTTGTTGTAGT 2776 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||||||| ||||| | | ||||| |||| || ||||| ||||| ||||| Sbjct 2775 GCGCCAGGCGGGATGCCTCCGCAGCAATGCGTTCGAAAATATCGTTCACAAAGCTGTTCA 2716 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | || |||||||| ||| |||||||| ||||| |||||||||| Sbjct 2715 TGATGCTCATAGCCTTCGACGAGATGCCAGTGTCCGGGTGCACTTGCTTCAGCACCTTGT 2656 Query 1485710 A 1485710 | Sbjct 2655 A 2655 >seq1282 Length=1948688 Score = 96.9 bits (106), Expect = 5e-14 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 2035566 GACAAGCGCACCGACGACATTTCGCCGTGGGACAAGGCCTTTTGCGAGGTCGACCAACCC 2035625 || ||||||||||| ||||| ||||||| | || | |||| ||||| Sbjct 900833 GAGAAGCGCACCGATGACATCAGCTCGTGGGATGCCGATTTCCTCAAGGTGGACCAGGGT 900892 Query 2035626 ACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTG 2035685 ||||| || ||| | || || || || ||||| | ||||| ||| || |||||| || Sbjct 900893 ACCCTGTTCGAGCTTATACTGGCGGCAAACTATTTGGACATAAAGGGACTGCTCGATGTG 900952 Query 2035686 GGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACC 2035745 ||||||||| ||||| ||| | ||||||||||| | || || || || ||||| || Sbjct 900953 ACGTGCAAGACGGTGGCAAACATGATCAAGGGCAAAACCCCGGAAGAGATTCGCAAAACG 901012 Query 2035746 TTTAACATCAAGTACG 2035761 || ||||| ||| ||| Sbjct 901013 TTCAACATTAAGAACG 901028 >seq567 Length=268466 Score = 96.9 bits (106), Expect = 5e-14 Identities = 166/241 (69%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| || || ||||| || ||||| || || |||||| | ||||| || || ||| Sbjct 232673 TGTACTTCGTCACAGCCTTCGTTCCCTCGGACACAGCGTGCTTTGCCAGCTCACCCGGCA 232732 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || || || || ||||||||||| |||| |||||| ||||||||| Sbjct 232733 ACAGTAGTCGGACCGCCGTCTGGATCTCCCGGGACGTGATCGTCGAGCGCTTGTTGTAAT 232792 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||| ||| || || | | || || |||| || ||||| || || ||||| Sbjct 232793 GGGCCAACCGGGACGCTTCCGCCGCAATCCGCTCGAAGATATCGTTCACGAAACTGTTCA 232852 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | || |||||||| ||||| || |||||||| |||||||| | Sbjct 232853 TGATGCTCATAGCCTTCGACGAGATGCCGGTATCGGGATGGACCTGCTTCAGCACCTTAT 232912 Query 1485710 A 1485710 | Sbjct 232913 A 232913 >seq1224 Length=3725 Score = 95.1 bits (104), Expect = 2e-13 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||||||||| || || || || ||||||||| ||||||| || || ||| Sbjct 121 TGTACTTGGTGACGGCCTTCGTGCCTTCGGACACGGCGTGCTTGGCCAGCTCACCAGGCA 62 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT 1485584 || ||| || ||||| || ||||| ||||||| |||||| |||||||| Sbjct 61 AGAGCAGACGGACGGCCGTTTGGATTTCGCGGGACGTGATCGTCGAACGCTTGTT 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916098326611088