Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28]
1,392 sequences; 225,223,604 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq575 141 6e-29
seq672 129 4e-25
seq949 95.1 8e-15
>seq575
Length=281738
Score = 141 bits (156), Expect = 6e-29
Identities = 161/214 (75%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| ||||| |||| ||| ||||||||||||||||||||| || || |||| ||||
Sbjct 24157 AGCACCAGATGAAGGGTCGACTCCTTCTGAATGTTATAGTCAGACAGTGTGCGTCCATCC 24098
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
||||| ||||| ||||||||||||| || ||||| || |||| | |||||||| ||
Sbjct 24097 TCCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCCGGCGGGATGCCCTCCTTATCC 24038
Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943
| || || || || || || |||| || || |||||| |||| ||| || |
Sbjct 24037 TGGATCTTCGCCTTCAC--ATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATAG 23980
Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|||| ||||||||||| || || |||||||||||
Sbjct 23979 TCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 23946
>seq672
Length=1102954
Score = 129 bits (142), Expect = 4e-25
Identities = 158/216 (73%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
||| ||||| |||| ||| |||||||||||||| |||||||| || |||| ||||
Sbjct 391591 CAGCACCAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCCGACAGAGTGCGGCCATC 391650
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
||||| ||||| ||||||||||| || || ||||| ||| | || | || ||||| ||
Sbjct 391651 CTCCAGCTGCTTACCGGCGAAGATGAGACGCTGCTGATCTGGGGGAATTCCTTCCTTATC 391710
Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944
| || ||| || || | | |||| || | |||||| |||| || |||||
Sbjct 391711 CTGAATCTTTGCCTTCACATTTTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTGATGGT 391770
Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980
||| || ||||| || || || || |||||||||||
Sbjct 391771 CTTGCCGGTGAGTGTTTTCACGAAAATCTGCATGAT 391806
>seq949
Length=1771395
Score = 95.1 bits (104), Expect = 8e-15
Identities = 151/217 (70%), Gaps = 10/217 (5%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|||||||| || | || ||||||||||| || |||||||| || | || ||||
Sbjct 446685 AGGACCAGATGGAGAGTCGATTCCTTCTGAATATTGTAGTCCGACAGCGTACGGCCATCT 446744
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|||| ||||| || || |||||||| || ||||| ||| | || | |||||||| ||
Sbjct 446745 TCCAACTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTGGTGGGATTCCCTCCTTATCC 446804
Query 34886 TTTATTTTTTGTTTGAC-----GGATGCTATCGATTCATTGGCCTCGACATCAACGGTTA 34940
| || || || || |||| ||||| | | ||| || || | ||| |
Sbjct 446805 TGAATCTTGGCCTTAACATTCTCGATGGTATCGGAT-----GGCTCAACCTCCAGGGTGA 446859
Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
| |||||||| || || ||||| || |||||||||||
Sbjct 446860 TCGTCTTTCCAGTTAGAGTCTTGACGAAGATCTGCAT 446896
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325687274621648
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |