Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28]
1,392 sequences; 225,223,604 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq575 105 5e-18
seq949 87.8 1e-12
>seq575
Length=281738
Score = 105 bits (116), Expect = 5e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631
|| ||||||| |||||| || || || || ||||||||||| || | | ||||| |
Sbjct 24160 CGAAGCACCAGATGAAGGGTCGACTCCTTCTGAATGTTATAGTCAGACAGTGTGCGTCCA 24101
Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691
|| || || || || || || | ||||| | |||||||||||||| || ||||| ||
Sbjct 24100 TCCTCCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCCGGCGGGATGCCCTCCTTA 24041
Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751
|| || | || || ||| | || | || || || | || || ||||| || |||
Sbjct 24040 TCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATA 23981
Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTAAAACGTATG 29799
|| || || || | |||||| || || |||||||| | || ||| ||
Sbjct 23980 GTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCGTGAACCGTCTG 23933
>seq949
Length=1771395
Score = 87.8 bits (96), Expect = 1e-12
Identities = 153/220 (70%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||| || |||| ||| || || ||||| || ||||| || || |||| | || ||
Sbjct 446681 ACGAAGGACCAGATGGAGAGTCGATTCCTTCTGAATATTGTAGTCCGACAGCGTACGGCC 446740
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
||| || | || ||||||||| | |||| | |||||||| || || || ||||| ||
Sbjct 446741 ATCTTCCAACTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTGGTGGGATTCCCTCCTT 446800
Query 29691 GTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749
|| || ||| || | || ||| | || | || || || | || || || || || |
Sbjct 446801 ATCCTG-AATCTTGGCCTTAACATTCTCGATGGTATCGGATGGCTCAACCTCCAGGGTGA 446859
Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
| || || ||||||| || || || || |||||||||||
Sbjct 446860 TCGTCTTTCCAGTTAGAGTCTTGACGAAGATCTGCATTTT 446899
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385212664756272
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |